Experiment set1S309 for Bacteroides ovatus ATCC 8483
Chondroitin sulfate A sodium salt from bovine trachea 2.5 mg/mL carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + Chondroitin sulfate A sodium salt from bovine trachea (2.5 mg/mL)
Culturing: Bovatus_ATCC8483_ML6, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya on 10/30/24
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 7 genes in this experiment
For carbon source Chondroitin sulfate A sodium salt from bovine trachea across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Alkanesulfonate assimilation | 1 |
| Choline Transport | 1 |
| Choline and Betaine Uptake and Betaine Biosynthesis | 1 |
| Iron acquisition in Vibrio | 1 |
| Ton and Tol transport systems | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| choline-O-sulfate degradation | 3 | 1 | 1 |