Experiment set1S307 for Hydrogenophaga sp. GW460-11-11-14-LB1

Compare to:

Ying_all64 rep A; time point 2

200 most important genes:

  gene name fitness t score description  
GFF249 -6.2 -6.0 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
GFF245 -6.0 -4.1 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
GFF1575 -5.7 -4.9 Nudix-related transcriptional regulator NrtR compare
GFF1228 -5.1 -3.5 Sulfur carrier protein adenylyltransferase ThiF compare
GFF3888 -4.9 -3.3 Biopolymer transport protein ExbD/TolR compare
GFF3692 -4.6 -4.4 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF1354 -4.5 -3.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
GFF2894 -4.3 -3.0 Putative translation initiation inhibitor, yjgF family compare
GFF5566 -4.2 -3.4 FIG002207: Probable transmembrane protein compare
GFF1341 -4.2 -5.0 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF4893 -4.2 -3.9 Nitrogen regulation protein NR(I) compare
GFF3690 -4.1 -3.9 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) compare
GFF1227 -4.0 -2.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
GFF5772 -4.0 -2.7 Phosphomannomutase (EC 5.4.2.8) compare
GFF3682 -3.8 -4.5 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF1222 -3.8 -10.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF775 -3.7 -2.0 Cell division protein FtsK compare
GFF3687 -3.6 -4.8 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF2923 -3.6 -10.4 Cytochrome c-type biogenesis protein ResA compare
GFF3686 -3.5 -4.8 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF4535 -3.5 -4.1 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF3684 -3.5 -4.1 NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF2574 -3.5 -7.4 Methionyl-tRNA formyltransferase (EC 2.1.2.9) compare
GFF709 -3.4 -4.0 Cysteine synthase B (EC 2.5.1.47) compare
GFF4042 -3.4 -8.2 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF5766 -3.3 -5.8 PMID: 11481431 compare
GFF1350 -3.3 -3.1 Cytochrome c-type biogenesis protein Ccs1/ResB compare
GFF3360 -3.2 -21.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF2027 -3.2 -9.3 hypothetical protein compare
GFF3698 -3.1 -3.6 NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4) compare
GFF688 -3.1 -10.2 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF1767 -3.1 -3.6 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) compare
GFF3361 -3.0 -8.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF4600 -2.9 -8.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF3694 -2.9 -5.1 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF3695 -2.9 -3.3 FIG003089: Probable transmembrane protein compare
GFF4889 -2.9 -3.8 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2573 -2.8 -10.2 Peptide deformylase (EC 3.5.1.88) compare
GFF3363 -2.8 -12.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF689 -2.8 -11.1 Cytochrome c oxidase polypeptide I (EC 1.9.3.1) compare
GFF3326 -2.7 -13.0 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF1839 -2.7 -12.5 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
GFF5497 -2.7 -11.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF590 -2.6 -3.9 Sugar kinases, ribokinase family compare
GFF2615 -2.6 -6.1 Ferric uptake regulation protein FUR compare
GFF5768 -2.6 -9.8 Putative O-antigen biosynthesis protein precursor compare
GFF4892 -2.6 -15.6 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF698 -2.6 -6.2 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
GFF1787 -2.5 -10.0 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF5734 -2.4 -3.0 Ribosome small subunit-stimulated GTPase EngC compare
GFF1666 -2.4 -3.9 Holliday junction DNA helicase RuvA compare
GFF248 -2.4 -3.4 Glycine oxidase ThiO (EC 1.4.3.19) compare
GFF2936 -2.4 -4.1 Proposed lipoate regulatory protein YbeD compare
GFF4962 -2.3 -6.2 Excinuclease ABC subunit B compare
GFF4731 -2.3 -14.6 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
GFF5742 -2.3 -2.3 Probable transmembrane protein compare
GFF5767 -2.3 -5.3 Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also] compare
GFF697 -2.2 -9.1 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
GFF691 -2.2 -6.3 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
GFF1846 -2.2 -15.7 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
GFF1858 -2.1 -8.5 glycosyl transferase family 2 compare
GFF1862 -2.1 -10.6 Probable glycosyltransferase compare
GFF1845 -2.1 -13.7 O-antigen export system, permease protein compare
GFF4293 -2.1 -11.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF1856 -2.1 -14.8 hypothetical protein compare
GFF1853 -2.1 -12.7 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
GFF5561 -2.1 -5.2 Topoisomerase IV subunit B (EC 5.99.1.-) compare
GFF3803 -2.1 -7.0 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase compare
GFF1848 -2.1 -13.4 hypothetical protein compare
GFF1851 -2.1 -15.6 hypothetical protein compare
GFF1861 -2.0 -16.1 identified by sequence similarity; putative; ORF located using Blastx/Glimmer compare
GFF5559 -2.0 -4.4 Topoisomerase IV subunit A (EC 5.99.1.-) compare
GFF693 -2.0 -3.0 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) compare
GFF1859 -2.0 -13.2 CgeB family protein compare
GFF5771 -2.0 -8.5 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF5491 -2.0 -3.8 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF5173 -1.9 -3.1 MotA/TolQ/ExbB proton channel family protein compare
GFF676 -1.9 -9.2 Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-) compare
GFF1855 -1.9 -14.0 N-acetylneuraminate synthase (EC 2.5.1.56) compare
GFF5584 -1.9 -7.0 DNA polymerase I (EC 2.7.7.7) compare
GFF3324 -1.9 -11.6 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) compare
GFF1865 -1.9 -14.0 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
GFF5110 -1.8 -6.7 Phytoene synthase (EC 2.5.1.32) compare
GFF2043 -1.8 -10.6 Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster compare
GFF1764 -1.8 -4.4 Creatinine amidohydrolase (EC 3.5.2.10) compare
GFF1864 -1.8 -9.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) compare
GFF4513 -1.7 -9.0 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
GFF1854 -1.7 -8.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF222 -1.7 -2.4 ATP-dependent RNA helicase Bcep18194_A5658 compare
GFF2512 -1.6 -4.8 Exported zinc metalloprotease YfgC precursor compare
GFF3933 -1.6 -3.3 membrane protein, putative compare
GFF2367 -1.6 -6.6 hypothetical protein compare
GFF4534 -1.6 -5.5 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF695 -1.6 -6.3 Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion compare
GFF2614 -1.6 -2.2 HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-) compare
GFF1339 -1.6 -3.7 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
GFF1844 -1.6 -11.5 Aminotransferase compare
GFF4788 -1.5 -12.0 Methylmalonyl-CoA mutase (EC 5.4.99.2) compare
GFF3170 -1.5 -2.0 hypothetical protein compare
GFF1788 -1.5 -7.9 Probable proline rich signal peptide protein compare
GFF770 -1.5 -9.7 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF1842 -1.5 -11.2 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
GFF1267 -1.5 -8.4 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 compare
GFF4292 -1.5 -5.7 Oxidoreductase probably involved in sulfite reduction compare
GFF3575 -1.5 -2.0 hypothetical protein compare
GFF1843 -1.5 -9.9 hypothetical protein compare
GFF1972 -1.5 -6.6 Transcriptional regulator compare
GFF3308 -1.4 -5.0 N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87) compare
GFF5143 -1.4 -2.8 TPR repeat precursor compare
GFF3206 -1.4 -2.6 hypothetical protein compare
GFF29 -1.4 -2.4 Transcriptional regulator, MarR family compare
GFF4043 -1.4 -9.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF1803 -1.4 -1.9 Translation elongation factor G compare
GFF4861 -1.4 -4.0 Mlr7403 protein compare
GFF1257 -1.4 -2.0 FAD/FMN-containing dehydrogenases compare
GFF1841 -1.4 -10.9 GDP-L-fucose synthetase (EC 1.1.1.271) compare
GFF5228 -1.3 -9.0 Transcriptional regulator, TetR family compare
GFF1916 -1.3 -10.9 Probable transmembrane protein compare
GFF4243 -1.3 -4.4 ATP-dependent DNA helicase pcrA (EC 3.6.1.-) compare
GFF4888 -1.3 -7.2 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF1351 -1.3 -7.2 Cytochrome c4 compare
GFF3252 -1.3 -6.5 Serine/threonine protein kinase (EC 2.7.11.1) compare
GFF3500 -1.2 -2.1 Mll5900 protein compare
GFF5759 -1.2 -5.4 Glutaryl-CoA dehydrogenase (EC 1.3.99.7) compare
GFF2018 -1.2 -6.3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF780 -1.2 -1.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF3880 -1.2 -6.1 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF5183 -1.2 -2.0 glutamyl-Q-tRNA synthetase compare
GFF4289 -1.2 -7.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) compare
GFF2718 -1.2 -6.6 21 kDa hemolysin precursor compare
GFF3438 -1.2 -5.9 Poly(A) polymerase (EC 2.7.7.19) compare
GFF1847 -1.1 -9.8 hypothetical protein compare
GFF4291 -1.1 -4.6 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
GFF4536 -1.1 -3.2 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
GFF3628 -1.1 -1.4 Ornithine cyclodeaminase (EC 4.3.1.12) compare
GFF4803 -1.1 -2.5 Transcriptional regulator, GntR family compare
GFF4309 -1.1 -1.6 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
GFF4456 -1.1 -1.6 Two-component system sensory histidine kinase compare
GFF3945 -1.1 -1.7 hypothetical protein compare
GFF550 -1.1 -2.5 C4-type zinc finger protein, DksA/TraR family compare
GFF5667 -1.1 -1.3 6-hexanolactone hydrolase compare
GFF4290 -1.0 -6.5 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF3357 -1.0 -2.7 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF2036 -1.0 -8.1 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) compare
GFF107 -1.0 -3.9 Transcriptional regulator, LuxR family compare
GFF2443 -1.0 -3.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) compare
GFF301 -1.0 -3.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF803 -1.0 -4.8 PQQ-dependent oxidoreductase, gdhB family compare
GFF1300 -1.0 -3.7 Outer membrane stress sensor protease DegS compare
GFF1544 -1.0 -3.2 Transcriptional regulatory protein compare
GFF1860 -1.0 -7.5 Radical SAM compare
GFF4098 -1.0 -2.2 Glutamate racemase (EC 5.1.1.3) compare
GFF2507 -1.0 -3.6 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
GFF1338 -1.0 -5.2 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
GFF2040 -1.0 -6.1 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
GFF2495 -1.0 -5.9 DNA topoisomerase III, Burkholderia type (EC 5.99.1.2) compare
GFF3680 -1.0 -2.8 Preprotein translocase subunit SecG (TC 3.A.5.1.1) compare
GFF4166 -1.0 -1.6 Type IV secretory pathway, protease TraF compare
GFF696 -1.0 -4.5 Probable transmembrane protein compare
GFF3587 -0.9 -3.2 Formiminoglutamase (EC 3.5.3.8) compare
GFF2927 -0.9 -2.0 hypothetical protein compare
GFF5468 -0.9 -2.0 MCE-FAMILY PROTEIN MCE4B compare
GFF1204 -0.9 -3.8 Regulatory protein of benzoate catabolism compare
GFF1715 -0.9 -7.5 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
GFF1011 -0.9 -5.3 Transcriptional regulator, IclR family compare
GFF4700 -0.9 -2.0 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) / domain of unknown function compare
GFF1711 -0.9 -6.8 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
GFF4785 -0.9 -6.8 Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) compare
GFF5670 -0.9 -1.0 Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) compare
GFF2306 -0.9 -2.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
GFF138 -0.9 -2.5 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
GFF598 -0.9 -2.6 CcsA-related protein compare
GFF1741 -0.9 -8.0 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
GFF3780 -0.9 -2.7 4-hydroxybenzoyl-CoA thioesterase family active site compare
GFF4786 -0.9 -6.6 Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) compare
GFF2628 -0.9 -1.2 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF5737 -0.9 -3.9 LSU ribosomal protein L19p compare
GFF627 -0.9 -4.7 N-formylglutamate deformylase (EC 3.5.1.68) compare
GFF3310 -0.9 -1.3 Transcriptional regulator, GntR family compare
GFF4874 -0.8 -6.3 ATPase component BioM of energizing module of biotin ECF transporter compare
GFF3934 -0.8 -4.2 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF4501 -0.8 -4.2 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
GFF1293 -0.8 -2.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
GFF4427 -0.8 -1.3 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
GFF2500 -0.8 -4.3 RecA protein compare
GFF1895 -0.8 -3.3 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
GFF4502 -0.8 -1.7 L-asparaginase (EC 3.5.1.1) compare
GFF5735 -0.8 -4.8 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
GFF2511 -0.8 -2.8 Molybdenum cofactor biosynthesis protein MoaC compare
GFF3655 -0.8 -4.1 TldE protein, part of TldE/TldD proteolytic complex compare
GFF2897 -0.8 -2.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF2867 -0.8 -1.4 hypothetical protein compare
GFF5146 -0.8 -5.0 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
GFF4181 -0.8 -1.4 FIG00961917: hypothetical protein compare
GFF4944 -0.8 -5.3 transcriptional regulator, TetR family compare
GFF748 -0.8 -1.5 Tricarboxylate transport protein TctB compare
GFF2323 -0.8 -4.7 Transcriptional regulator, IclR family compare
GFF4101 -0.8 -1.9 Fumarate hydratase class II (EC 4.2.1.2) compare
GFF2954 -0.8 -5.8 Cytochrome c5 compare
GFF518 -0.8 -2.3 Transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Hydrogenophaga sp. GW460-11-11-14-LB1 in carbon source experiments

For carbon source Ying_all64 across organisms