Experiment set1S305 for Hydrogenophaga sp. GW460-11-11-14-LB1

Compare to:

Ying_Others16 rep B; time point 1

200 most important genes:

  gene name fitness t score description  
GFF1575 -7.3 -5.0 Nudix-related transcriptional regulator NrtR compare
GFF301 -5.4 -5.2 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF248 -5.3 -3.7 Glycine oxidase ThiO (EC 1.4.3.19) compare
GFF245 -4.8 -4.6 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
GFF5343 -4.4 -16.5 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF1354 -4.4 -4.2 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
GFF724 -4.4 -9.0 Ornithine cyclodeaminase (EC 4.3.1.12) compare
GFF2043 -4.3 -20.3 Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster compare
GFF3361 -4.3 -11.5 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF1228 -4.2 -5.0 Sulfur carrier protein adenylyltransferase ThiF compare
GFF3111 -4.2 -6.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF1767 -4.2 -2.9 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) compare
GFF3360 -4.1 -25.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF3110 -4.1 -6.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF3355 -4.1 -3.9 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF3106 -4.1 -24.1 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF1332 -4.0 -6.5 Shikimate kinase I (EC 2.7.1.71) compare
GFF5344 -3.9 -13.2 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) compare
GFF5772 -3.9 -2.7 Phosphomannomutase (EC 5.4.2.8) compare
GFF249 -3.9 -5.2 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
GFF2036 -3.9 -21.7 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) compare
GFF3354 -3.9 -10.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF2447 -3.9 -11.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF1882 -3.9 -9.2 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF523 -3.8 -8.9 Dihydroorotase (EC 3.5.2.3) compare
GFF1227 -3.8 -3.7 Carboxyl-terminal protease (EC 3.4.21.102) compare
GFF5239 -3.8 -15.0 Chorismate synthase (EC 4.2.3.5) compare
GFF5566 -3.7 -2.5 FIG002207: Probable transmembrane protein compare
GFF3888 -3.7 -2.9 Biopolymer transport protein ExbD/TolR compare
GFF3363 -3.7 -14.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF2763 -3.6 -4.3 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF1764 -3.6 -5.5 Creatinine amidohydrolase (EC 3.5.2.10) compare
GFF3356 -3.6 -4.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF651 -3.6 -7.6 Aspartate carbamoyltransferase (EC 2.1.3.2) compare
GFF652 -3.5 -5.7 Dihydroorotase (EC 3.5.2.3) compare
GFF2726 -3.4 -17.0 Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) compare
GFF5742 -3.4 -3.5 Probable transmembrane protein compare
GFF1379 -3.3 -19.0 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF4893 -3.3 -3.9 Nitrogen regulation protein NR(I) compare
GFF4147 -3.3 -17.0 Isocitrate lyase (EC 4.1.3.1) compare
GFF5766 -3.2 -6.1 PMID: 11481431 compare
GFF2615 -3.2 -5.4 Ferric uptake regulation protein FUR compare
GFF4211 -3.2 -8.6 Dihydroorotate dehydrogenase (EC 1.3.3.1) compare
GFF4292 -3.1 -8.4 Oxidoreductase probably involved in sulfite reduction compare
GFF2027 -3.0 -9.1 hypothetical protein compare
GFF590 -3.0 -4.0 Sugar kinases, ribokinase family compare
GFF1331 -3.0 -14.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF4535 -2.9 -4.4 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF1613 -2.8 -3.3 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF4892 -2.8 -16.2 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF1341 -2.8 -4.2 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF3107 -2.7 -3.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF4293 -2.6 -11.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF5497 -2.6 -12.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF3692 -2.6 -5.6 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF1293 -2.5 -6.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
GFF4289 -2.4 -13.2 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) compare
GFF709 -2.3 -3.9 Cysteine synthase B (EC 2.5.1.47) compare
GFF4107 -2.3 -16.1 Acetyl-coenzyme A synthetase (EC 6.2.1.1) compare
GFF3326 -2.3 -11.2 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF4291 -2.2 -8.0 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
GFF4290 -2.2 -12.0 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF1350 -2.2 -3.6 Cytochrome c-type biogenesis protein Ccs1/ResB compare
GFF689 -2.1 -10.4 Cytochrome c oxidase polypeptide I (EC 1.9.3.1) compare
GFF2574 -2.1 -5.5 Methionyl-tRNA formyltransferase (EC 2.1.2.9) compare
GFF1839 -2.0 -11.6 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
GFF767 -2.0 -2.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
GFF2923 -1.9 -8.6 Cytochrome c-type biogenesis protein ResA compare
GFF4042 -1.9 -7.3 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF550 -1.9 -3.0 C4-type zinc finger protein, DksA/TraR family compare
GFF2725 -1.9 -8.2 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
GFF688 -1.9 -8.3 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF3686 -1.9 -3.4 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF3694 -1.8 -4.1 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF2614 -1.8 -2.6 HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-) compare
GFF698 -1.8 -5.9 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
GFF1294 -1.8 -3.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
GFF2507 -1.7 -5.1 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
GFF1222 -1.7 -5.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF1257 -1.7 -3.1 FAD/FMN-containing dehydrogenases compare
GFF691 -1.7 -5.8 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
GFF3690 -1.7 -2.9 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) compare
GFF2573 -1.7 -7.2 Peptide deformylase (EC 3.5.1.88) compare
GFF5771 -1.6 -6.7 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF1787 -1.6 -7.9 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF2498 -1.6 -8.2 Response regulator receiver:Transcriptional regulatory protein, C- terminal compare
GFF3921 -1.5 -1.9 FIG152265: Sodium:solute symporter associated protein compare
GFF3687 -1.5 -2.1 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF3684 -1.5 -3.3 NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF3682 -1.5 -3.9 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF4523 -1.4 -5.3 FIG000859: hypothetical protein YebC compare
GFF2040 -1.4 -6.9 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
GFF697 -1.4 -7.7 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
GFF676 -1.4 -6.9 Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-) compare
GFF1916 -1.4 -11.6 Probable transmembrane protein compare
GFF693 -1.4 -2.6 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) compare
GFF3040 -1.3 -7.2 Malate synthase G (EC 2.3.3.9) compare
GFF5173 -1.3 -1.8 MotA/TolQ/ExbB proton channel family protein compare
GFF434 -1.3 -1.9 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
GFF2512 -1.3 -4.9 Exported zinc metalloprotease YfgC precursor compare
GFF695 -1.2 -4.5 Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion compare
GFF4294 -1.2 -7.4 Putative sulfate permease compare
GFF3800 -1.2 -2.5 2-pyrone-4,6-dicarboxylic acid hydrolase compare
GFF2497 -1.2 -4.7 Sensor protein basS/pmrB (EC 2.7.3.-) compare
GFF2731 -1.2 -3.9 Two-component system response regulator compare
GFF312 -1.2 -1.3 Mobile element protein compare
GFF3374 -1.1 -3.1 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF2628 -1.1 -2.4 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF3695 -1.1 -1.1 FIG003089: Probable transmembrane protein compare
GFF3018 -1.1 -6.5 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
GFF3803 -1.1 -5.4 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase compare
GFF122 -1.1 -4.3 HNS-like transcription regulator protein compare
GFF4341 -1.1 -6.0 FIG000325: clustered with transcription termination protein NusA compare
GFF5395 -1.1 -2.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
GFF5228 -1.1 -8.0 Transcriptional regulator, TetR family compare
GFF5110 -1.0 -4.8 Phytoene synthase (EC 2.5.1.32) compare
GFF1550 -1.0 -1.4 hypothetical protein compare
GFF2367 -1.0 -5.0 hypothetical protein compare
GFF4889 -1.0 -2.4 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2485 -1.0 -4.2 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
GFF2567 -1.0 -3.2 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
GFF5584 -1.0 -4.5 DNA polymerase I (EC 2.7.7.7) compare
GFF1075 -1.0 -2.9 tRNA-Arg-CCT compare
GFF1788 -0.9 -5.7 Probable proline rich signal peptide protein compare
GFF4280 -0.9 -7.3 2-isopropylmalate synthase (EC 2.3.3.13) compare
GFF696 -0.9 -5.3 Probable transmembrane protein compare
GFF2113 -0.9 -1.0 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF4861 -0.9 -3.3 Mlr7403 protein compare
GFF1351 -0.9 -7.0 Cytochrome c4 compare
GFF1864 -0.9 -5.7 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) compare
GFF5768 -0.9 -5.7 Putative O-antigen biosynthesis protein precursor compare
GFF2806 -0.9 -1.9 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF3438 -0.9 -4.8 Poly(A) polymerase (EC 2.7.7.19) compare
GFF525 -0.9 -6.4 glutamine synthetase family protein compare
GFF3716 -0.9 -1.3 Tricarboxylate transport protein TctC compare
GFF2044 -0.9 -2.9 Agmatinase (EC 3.5.3.11) compare
GFF4709 -0.9 -1.3 Outer membrane protein compare
GFF2018 -0.9 -5.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF2389 -0.8 -1.1 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF5758 -0.8 -2.4 Transcriptional regulators, LysR family compare
GFF2244 -0.8 -1.3 putative exported protein compare
GFF3797 -0.8 -2.2 Hypothetical ABC transport system, periplasmic component compare
GFF3098 -0.8 -1.8 putative exported protein compare
GFF5143 -0.8 -1.6 TPR repeat precursor compare
GFF3603 -0.8 -2.2 Plasmid conjugative transfer endonuclease compare
GFF4534 -0.8 -3.0 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF3799 -0.8 -2.2 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17) compare
GFF5398 -0.8 -3.9 Nitrogen regulation protein NR(I) compare
GFF2650 -0.8 -3.7 Glutathione synthetase (EC 6.3.2.3) compare
GFF172 -0.8 -1.7 Transcriptional regulator, GntR family compare
GFF5734 -0.8 -2.3 Ribosome small subunit-stimulated GTPase EngC compare
GFF2872 -0.8 -4.4 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
GFF1339 -0.8 -3.9 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
GFF1848 -0.8 -6.3 hypothetical protein compare
GFF3773 -0.8 -3.9 Transcriptional regulator, MarR family compare
GFF1846 -0.8 -6.7 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
GFF29 -0.8 -1.4 Transcriptional regulator, MarR family compare
GFF5387 -0.8 -1.1 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF1845 -0.8 -6.1 O-antigen export system, permease protein compare
GFF1854 -0.8 -4.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF3575 -0.8 -1.6 hypothetical protein compare
GFF2876 -0.8 -2.4 Putative drug efflux protein compare
GFF775 -0.8 -1.0 Cell division protein FtsK compare
GFF2500 -0.7 -4.6 RecA protein compare
GFF2936 -0.7 -1.6 Proposed lipoate regulatory protein YbeD compare
GFF1851 -0.7 -6.6 hypothetical protein compare
GFF2038 -0.7 -1.3 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) compare
GFF4005 -0.7 -1.6 hypothetical protein compare
GFF2347 -0.7 -2.7 tRNA-Pro-CGG compare
GFF1748 -0.7 -2.3 sensory box histidine kinase/response regulator compare
GFF1853 -0.7 -5.4 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
GFF5628 -0.7 -1.0 Transcriptional regulator, LysR family compare
GFF3922 -0.7 -6.0 Acetate permease ActP (cation/acetate symporter) compare
GFF4456 -0.7 -0.9 Two-component system sensory histidine kinase compare
GFF5695 -0.7 -1.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF3059 -0.7 -4.0 5-aminopentanamidase (EC 3.5.1.30) compare
GFF71 -0.7 -1.2 Predicted secretion system X protein GspD-like compare
GFF4924 -0.7 -3.7 PhbF compare
GFF479 -0.7 -1.5 Citronellol and citronellal dehydrogenase compare
GFF794 -0.7 -2.7 Glucarate dehydratase (EC 4.2.1.40) compare
GFF1856 -0.7 -5.9 hypothetical protein compare
GFF1169 -0.7 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
GFF41 -0.7 -1.5 hypothetical protein compare
GFF4493 -0.7 -3.3 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
GFF3073 -0.7 -2.4 Integral membrane protein compare
GFF4866 -0.7 -2.7 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) compare
GFF4229 -0.7 -2.6 Exopolyphosphatase (EC 3.6.1.11) compare
GFF2722 -0.7 -2.2 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
GFF1652 -0.7 -1.6 similar to protocatechuate 4,5-dioxygenase beta chain compare
GFF1059 -0.7 -1.4 hypothetical protein compare
GFF3185 -0.7 -1.8 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
GFF5357 -0.7 -2.0 Transcriptional regulator, AraC family compare
GFF1803 -0.7 -1.2 Translation elongation factor G compare
GFF426 -0.7 -2.8 Transcriptional regulator, GntR family compare
GFF2037 -0.7 -5.6 glutamine synthetase family protein compare
GFF5767 -0.7 -2.1 Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also] compare
GFF3798 -0.7 -3.3 4-oxalomesaconate hydratase (EC 4.2.1.83) compare
GFF5577 -0.7 -2.5 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
GFF86 -0.7 -1.1 hypothetical protein compare
GFF5680 -0.6 -2.6 Transcriptional regulator, AraC family compare


Specific Phenotypes

None in this experiment

For Hydrogenophaga sp. GW460-11-11-14-LB1 in carbon source experiments

For carbon source Ying_Others16 across organisms