Experiment set1S301 for Escherichia coli ECRC101

Compare to:

Bas14

200 most detrimental genes:

  gene name fitness t score description  
MCAODC_16475 pptA +2.6 5.0 tautomerase PptA compare
MCAODC_26970 nrfB +2.0 13.4 phage adsorption protein NrfB compare
MCAODC_26975 nfrA +1.9 16.1 bacteriophage adsorption protein NfrA compare
MCAODC_05075 wecB +1.8 10.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MCAODC_11020 rpoS +1.8 13.7 RNA polymerase sigma factor RpoS compare
MCAODC_18975 yebW +1.7 2.3 Uncharacterized protein YebW compare
MCAODC_26980 ybcH +1.7 9.3 DUF4434 domain-containing protein compare
MCAODC_19770 yedQ +1.6 9.9 cellulose biosynthesis regulator YedQ compare
MCAODC_17885 nth +1.3 2.4 endonuclease III compare
MCAODC_18835 yoaB +1.3 2.9 RutC family protein YoaB compare
MCAODC_23355 spo0J +1.3 2.6 transcriptional regulator compare
MCAODC_16025 uspE +1.3 3.2 universal stress protein UspE compare
MCAODC_11045 pphB +1.3 2.6 protein-serine/threonine phosphatase compare
MCAODC_21950 ycgJ +1.2 2.6 Uncharacterized protein YcgJ compare
MCAODC_21865 ldcA +1.2 2.1 muramoyltetrapeptide carboxypeptidase compare
MCAODC_20375 sbcB +1.2 2.6 exodeoxyribonuclease I compare
MCAODC_11405 ygaV +1.2 4.2 putative HTH-type transcriptional regulator YgaV compare
MCAODC_14655 maiA +1.2 2.8 maleylacetoacetate isomerase compare
MCAODC_16280 ydcI +1.2 3.4 Uncharacterized HTH-type transcriptional regulator YdcI compare
MCAODC_08785 +1.2 2.9 galactosamine-6-phosphate isomerase compare
MCAODC_21110 rcnR +1.2 2.7 Ni(II)/Co(II)-binding transcriptional repressor RcnR compare
MCAODC_20980 +1.1 2.6 Phage protein B compare
MCAODC_14150 yfaE +1.1 2.0 ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE compare
MCAODC_16655 gadB +1.1 2.6 glutamate decarboxylase compare
MCAODC_09760 rdgB +1.1 2.8 XTP/dITP diphosphatase compare
MCAODC_15965 tyrR +1.1 2.4 transcriptional regulator TyrR compare
MCAODC_16380 ydcV +1.1 2.9 Inner membrane ABC transporter permease protein YdcV compare
MCAODC_19435 marR +1.1 2.0 MarR family transcriptional regulator compare
MCAODC_17620 speG +1.1 2.0 spermidine N1-acetyltransferase compare
MCAODC_18360 +1.1 2.2 ShET2 enterotoxin, N-terminal region compare
MCAODC_15740 +1.0 2.8 EAL domain-containing protein compare
MCAODC_21880 dadA +1.0 2.3 D-amino acid dehydrogenase compare
MCAODC_11485 xerD +1.0 1.8 site-specific integrase compare
MCAODC_20365 +1.0 2.9 DNA gyrase inhibitor compare
MCAODC_18220 ydiF +1.0 2.6 Acetate CoA-transferase YdiF compare
MCAODC_18240 ydiQ +1.0 2.5 electron transfer flavoprotein compare
MCAODC_16055 abgR +1.0 1.9 LysR family transcriptional regulator compare
MCAODC_18940 prc +1.0 5.3 carboxy terminal-processing peptidase compare
MCAODC_16010 mppA +1.0 2.4 murein tripeptide ABC transporter substrate-binding protein MppA compare
MCAODC_09625 +1.0 2.1 adherence protein compare
MCAODC_14330 ccmA +1.0 1.7 cytochrome c biogenesis heme-transporting ATPase CcmA compare
MCAODC_18715 dgcJ +1.0 3.0 diguanylate cyclase DgcJ compare
MCAODC_19850 zinT +1.0 1.9 metal-binding protein ZinT compare
MCAODC_16900 ydeJ +1.0 1.7 2-oxo-tetronate isomerase compare
MCAODC_26170 sdhC +1.0 1.6 succinate dehydrogenase cytochrome b556 subunit compare
MCAODC_24515 +1.0 1.3 hypothetical protein compare
MCAODC_22870 thiK +1.0 2.6 thiamine kinase compare
MCAODC_11400 ygaP +1.0 1.1 thiosulfate sulfurtransferase YgaP compare
MCAODC_06005 tnp-IS3 +0.9 1.8 IS3 family transposase compare
MCAODC_04480 yiiE +0.9 1.5 Uncharacterized protein YiiE compare
MCAODC_19210 cutC +0.9 2.2 copper homeostasis protein CutC compare
MCAODC_23215 cgsF +0.9 1.3 curli production assembly/transport protein CsgF compare
MCAODC_16525 narU +0.9 2.1 nitrate/nitrite transporter NarU compare
MCAODC_18890 +0.9 2.2 UPF0266 membrane protein YobD compare
MCAODC_26380 nagA +0.9 4.3 N-acetylglucosamine-6-phosphate deacetylase compare
MCAODC_12975 emrY +0.9 3.6 multidrug efflux MFS transporter permease subunit EmrY compare
MCAODC_19675 fliE +0.9 1.3 flagellar hook-basal body complex protein FliE compare
MCAODC_23225 ycdZ +0.9 2.5 Inner membrane protein YcdZ compare
MCAODC_14050 yfaZ +0.9 2.6 Outer membrane protein YfaZ compare
MCAODC_19745 rcsA +0.9 2.3 transcriptional regulator RcsA compare
MCAODC_18900 mntP +0.9 1.8 manganese efflux pump MntP compare
MCAODC_24410 +0.9 2.5 AraC family transcriptional regulator compare
MCAODC_16175 +0.9 2.9 DUF2773 domain-containing protein compare
MCAODC_05430 +0.8 1.1 Putative type III effector protein compare
MCAODC_13720 accD +0.8 1.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta compare
MCAODC_26385 nagC +0.8 3.9 DNA-binding transcriptional regulator NagC compare
MCAODC_26330 ybfE +0.8 2.7 LexA regulated protein compare
MCAODC_24485 +0.8 2.5 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT compare
MCAODC_11015 nlpD +0.8 5.6 murein hydrolase activator NlpD compare
MCAODC_22730 +0.8 2.1 DNA-binding protein compare
MCAODC_16095 dbpA +0.8 2.4 ATP-dependent RNA helicase DbpA compare
MCAODC_19795 dcm +0.8 2.1 DNA-cytosine methyltransferase compare
MCAODC_21970 +0.8 1.7 autotransporter outer membrane beta-barrel domain-containing protein compare
MCAODC_21905 umuC +0.8 1.8 DNA polymerase V catalytic protein compare
MCAODC_16800 gGDEF +0.8 2.7 diguanylate cyclase compare
MCAODC_15655 yciN +0.8 1.4 Protein YciN compare
MCAODC_00810 +0.8 2.6 Protein YadX compare
MCAODC_20955 +0.8 1.4 Uncharacterized protein in GpA 5'region compare
MCAODC_25640 +0.8 2.7 T3SS effector protein NleH compare
MCAODC_00205 crl +0.8 3.7 sigma factor-binding protein Crl compare
MCAODC_16845 marR +0.8 2.7 multiple antibiotic resistance transcriptional regulator MarR compare
MCAODC_18185 ydiK +0.8 2.7 AI-2E family transporter YdiK compare
MCAODC_18085 ydhT +0.8 2.8 protein YdhT compare
MCAODC_21160 +0.8 1.5 WGR domain-containing protein compare
MCAODC_06520 cspA +0.8 0.9 Major cold shock protein compare
MCAODC_18310 btuC +0.8 2.6 vitamin B12 ABC transporter permease BtuC compare
MCAODC_23770 +0.8 1.4 Outer membrane lipoprotein-sorting protein compare
MCAODC_21580 yciA +0.8 1.8 acyl-CoA thioester hydrolase YciA compare
MCAODC_10100 recJ +0.8 4.5 single-stranded-DNA-specific exonuclease RecJ compare
MCAODC_18390 yniB +0.8 2.0 Uncharacterized protein YniB compare
MCAODC_19835 hiuH +0.8 1.1 hydroxyisourate hydrolase compare
MCAODC_16365 potD +0.8 2.3 spermidine/putrescine ABC transporter substrate-binding protein compare
MCAODC_00150 cII +0.7 1.1 Transcriptional activator II compare
MCAODC_20460 wzzB +0.7 4.1 LPS O-antigen chain length determinant protein WzzB compare
MCAODC_10340 +0.7 2.6 Type III secretion protein EprH compare
MCAODC_25290 dgcI +0.7 2.9 putative diguanylate cyclase DgcI compare
MCAODC_18775 leuE +0.7 1.4 leucine efflux protein LeuE compare
MCAODC_12310 yfgG +0.7 1.2 Uncharacterized protein YfgG compare
MCAODC_24630 matP +0.7 1.6 macrodomain Ter protein MatP compare
MCAODC_15590 trpA +0.7 2.0 tryptophan synthase subunit alpha compare
MCAODC_09595 tnpB +0.7 1.9 IS66 family insertion sequence element accessory protein TnpB compare
MCAODC_19580 sdiA +0.7 3.2 transcriptional regulator SdiA compare
MCAODC_23410 +0.7 0.9 Membrane protein compare
MCAODC_19630 fliT +0.7 1.9 flagella biosynthesis regulatory protein FliT compare
MCAODC_27425 acrA +0.7 4.4 multidrug efflux RND transporter periplasmic adaptor subunit AcrA compare
MCAODC_21240 yehS +0.7 1.3 Uncharacterized protein YehS compare
MCAODC_09620 +0.7 1.0 adherence protein compare
MCAODC_23490 terB +0.7 2.4 Tellurium resistance protein TerB compare
MCAODC_11460 Ile2_trna +0.7 1.0 tRNA-Ile2(cat) compare
MCAODC_06385 yiaW +0.7 1.2 Inner membrane protein YiaW compare
MCAODC_15385 ccdA +0.7 3.3 type II toxin-antitoxin system antitoxin CcdA compare
MCAODC_21185 +0.7 0.8 Protein compare
MCAODC_18855 nudL +0.7 3.0 CoA pyrophosphatase compare
MCAODC_18545 ynjD +0.7 2.0 Uncharacterized ABC transporter ATP-binding protein YnjD compare
MCAODC_06515 hokA +0.7 1.2 type I toxin-antitoxin system toxin HokA compare
MCAODC_12765 +0.7 1.2 flxA-like family protein compare
MCAODC_26635 cspE +0.7 2.0 transcription antiterminator/RNA stability regulator CspE compare
MCAODC_15855 pspF +0.7 1.6 phage shock protein operon transcriptional activator compare
MCAODC_00655 rnhB +0.7 1.0 ribonuclease HII compare
MCAODC_11480 alpA +0.7 1.0 dipicolinate synthase compare
MCAODC_13390 +0.7 1.7 holin compare
MCAODC_09680 +0.7 1.9 IS66 family transposase compare
MCAODC_05410 +0.7 1.7 hypothetical protein compare
MCAODC_13015 +0.7 1.4 hypothetical protein compare
MCAODC_13285 +0.7 2.1 Putitave protein compare
MCAODC_15325 tnp-IS911 +0.7 1.4 IS3 family IS911 transposase compare
MCAODC_14685 yohD +0.7 2.3 Inner membrane protein YohD compare
MCAODC_16790 yneE +0.7 1.2 UPF0187 protein YneE compare
MCAODC_19790 vsr +0.6 1.3 VSPR family DNA mismatch endonuclease compare
MCAODC_21075 yegW +0.6 1.6 Uncharacterized HTH-type transcriptional regulator YegW compare
MCAODC_16815 sad +0.6 1.6 succinate-semialdehyde dehydrogenase compare
MCAODC_23390 +0.6 0.8 DUF4222 domain-containing protein compare
MCAODC_23955 efeB +0.6 2.0 iron uptake transporter deferrochelatase/peroxidase subunit compare
MCAODC_02110 fimC +0.6 2.0 type 1 fimbria chaperone FimC compare
MCAODC_16305 ydcK +0.6 0.9 YdcK family protein compare
MCAODC_04270 glpF +0.6 2.6 glycerol uptake facilitator protein GlpF compare
MCAODC_22040 cotJC +0.6 2.4 Mn-containing catalase compare
MCAODC_25665 lomR +0.6 2.5 Ail/Lom family protein compare
MCAODC_09850 cmtB +0.6 1.2 PTS mannitol transporter subunit IIA compare
MCAODC_24680 zapC +0.6 1.5 cell division protein ZapC compare
MCAODC_17730 ydgI +0.6 2.4 Putative arginine/ornithine antiporter compare
MCAODC_04200 +0.6 1.0 Rhs element protein compare
MCAODC_16585 sra +0.6 2.0 stationary-phase-induced ribosome-associated protein compare
MCAODC_12640 yfeZ +0.6 2.2 Inner membrane protein YfeZ compare
MCAODC_23190 csgA +0.6 1.7 curlin major subunit CsgA compare
MCAODC_19755 yodD +0.6 1.2 YodD family peroxide/acid resistance protein compare
MCAODC_21945 +0.6 2.5 inhibitor of g-type lysozyme compare
MCAODC_18020 ynhF +0.6 0.9 stress response protein YnhF compare
MCAODC_18485 astE +0.6 1.6 succinylglutamate desuccinylase compare
MCAODC_22620 +0.6 1.1 hypothetical protein compare
MCAODC_25090 +0.6 1.2 hypothetical protein compare
MCAODC_16530 espR1 +0.6 1.1 T3SS effector leucine-rich repeat protein EspR1 compare
MCAODC_21685 ychJ +0.6 2.3 YchJ family protein compare
MCAODC_15030 +0.6 1.1 DNA breaking-rejoining protein compare
MCAODC_16670 yddA +0.6 1.2 Inner membrane ABC transporter ATP-binding protein YddA compare
MCAODC_12495 ypfM +0.6 0.8 protein YpfM compare
MCAODC_19830 hprR +0.6 1.4 response regulator transcription factor HprR compare
MCAODC_24095 torR +0.6 2.2 two-component system response regulator TorR compare
MCAODC_24820 ycbJ +0.6 2.6 Uncharacterized protein YcbJ compare
MCAODC_16700 ydeQ +0.6 1.3 Uncharacterized fimbrial-like protein YdeQ compare
MCAODC_03005 ghoS +0.6 1.4 type V toxin-antitoxin system endoribonuclease antitoxin GhoS compare
MCAODC_25980 nadA +0.6 2.6 quinolinate synthase NadA compare
MCAODC_17040 +0.6 1.6 Portal protein compare
MCAODC_28335 rclR +0.6 1.9 DNA-binding transcriptional regulator RclR compare
MCAODC_14250 ompC +0.6 2.7 porin OmpC compare
MCAODC_21860 emtA +0.6 1.5 membrane-bound lytic murein transglycosylase EmtA compare
MCAODC_01950 +0.6 2.7 DUF1524 domain-containing protein compare
MCAODC_13575 fadL +0.6 4.0 long-chain fatty acid transporter FadL compare
MCAODC_25625 ybhB +0.6 1.5 kinase inhibitor compare
MCAODC_16100 ttcA +0.6 1.8 tRNA 2-thiocytidine(32) synthetase TtcA compare
MCAODC_25345 fsa +0.6 2.3 fructose-6-phosphate aldolase compare
MCAODC_22070 +0.6 1.2 tail assembly protein compare
MCAODC_20240 nac +0.6 1.5 nitrogen assimilation transcriptional regulator NAC compare
MCAODC_21505 eCs1768 +0.6 1.7 DNA-binding protein compare
MCAODC_12760 yfeR +0.6 2.5 Uncharacterized HTH-type transcriptional regulator YfeR compare
MCAODC_19305 flhD +0.6 1.3 flagellar transcriptional regulator FlhD compare
MCAODC_18490 astB +0.6 2.3 N-succinylarginine dihydrolase compare
MCAODC_23135 mdtG +0.6 1.2 multidrug efflux MFS transporter MdtG compare
MCAODC_22670 +0.6 2.4 YjhS compare
MCAODC_19280 cheW +0.6 1.4 chemotaxis protein CheW compare
MCAODC_00930 panD +0.6 2.1 aspartate 1-decarboxylase compare
MCAODC_14300 napD +0.6 0.6 chaperone NapD compare
MCAODC_16180 ynbA +0.6 1.3 Inner membrane protein YnbA compare
MCAODC_21610 oppF +0.6 1.7 murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF compare
MCAODC_18910 cspE +0.6 1.9 transcription antiterminator/RNA stability regulator CspE compare
MCAODC_19765 yedP +0.6 1.4 mannosyl-3-phosphoglycerate phosphatase-related protein compare
MCAODC_10145 ghxQ +0.6 3.2 guanine/hypoxanthine transporter GhxQ compare
MCAODC_08330 zapG +0.6 0.8 Z-ring associated protein ZapG compare
MCAODC_25910 modC +0.5 1.7 molybdenum ABC transporter ATP-binding protein ModC compare
MCAODC_02535 ytfK +0.5 3.1 Uncharacterized protein YtfK compare
MCAODC_23985 +0.5 1.0 hypothetical protein compare
MCAODC_25780 +0.5 0.7 holin compare
MCAODC_13260 +0.5 1.5 hypothetical protein compare
MCAODC_19240 flhB +0.5 1.8 flagellar biosynthesis protein FlhB compare
MCAODC_05790 escK +0.5 0.7 type III secretion system sorting platform component compare
MCAODC_13330 ninH +0.5 1.0 Protein ninH compare
MCAODC_18600 sIMPL +0.5 1.0 SIMPL domain-containing protein compare
MCAODC_26995 fimZ +0.5 1.1 fimbria biosynthesis transcriptional regulator FimZ compare
MCAODC_23850 fimA +0.5 1.8 fimbrial protein compare
MCAODC_27150 allA +0.5 1.9 ureidoglycolate lyase compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECRC101 in phage experiments

For phage MOI 10 across organisms