Experiment set1S300 for Hydrogenophaga sp. GW460-11-11-14-LB1

Compare to:

Ying_OrganicAcid7 rep C; time point 1

200 most important genes:

  gene name fitness t score description  
GFF5768 -7.8 -7.6 Putative O-antigen biosynthesis protein precursor compare
GFF5497 -6.9 -9.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF1862 -6.6 -10.0 Probable glycosyltransferase compare
GFF1856 -6.5 -13.3 hypothetical protein compare
GFF3326 -6.5 -7.7 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF5771 -6.5 -6.3 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF1851 -6.4 -18.1 hypothetical protein compare
GFF1846 -6.3 -17.7 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
GFF1844 -6.2 -15.1 Aminotransferase compare
GFF1853 -6.2 -14.4 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
GFF4731 -6.2 -14.3 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
GFF3324 -6.1 -13.7 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) compare
GFF1854 -6.1 -7.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF1861 -6.0 -22.0 identified by sequence similarity; putative; ORF located using Blastx/Glimmer compare
GFF1848 -6.0 -15.6 hypothetical protein compare
GFF1855 -6.0 -18.1 N-acetylneuraminate synthase (EC 2.5.1.56) compare
GFF1843 -5.9 -13.3 hypothetical protein compare
GFF1858 -5.9 -9.8 glycosyl transferase family 2 compare
GFF1859 -5.6 -17.7 CgeB family protein compare
GFF1864 -5.6 -7.7 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) compare
GFF1845 -5.4 -13.6 O-antigen export system, permease protein compare
GFF1839 -5.2 -5.0 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
GFF5173 -5.1 -3.5 MotA/TolQ/ExbB proton channel family protein compare
GFF249 -4.5 -6.1 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
GFF2367 -4.4 -8.4 hypothetical protein compare
GFF1865 -4.3 -17.9 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
GFF5766 -4.3 -2.9 PMID: 11481431 compare
GFF245 -4.0 -4.4 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
GFF4535 -4.0 -3.8 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF5772 -3.9 -2.6 Phosphomannomutase (EC 5.4.2.8) compare
GFF4211 -3.8 -8.0 Dihydroorotate dehydrogenase (EC 1.3.3.1) compare
GFF1354 -3.8 -5.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
GFF3356 -3.7 -5.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF3361 -3.6 -12.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF3111 -3.6 -5.9 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF1613 -3.5 -3.2 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF3888 -3.5 -3.2 Biopolymer transport protein ExbD/TolR compare
GFF709 -3.5 -3.4 Cysteine synthase B (EC 2.5.1.47) compare
GFF3354 -3.5 -11.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF3106 -3.4 -22.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF301 -3.3 -4.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF3110 -3.3 -5.9 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF5239 -3.3 -14.7 Chorismate synthase (EC 4.2.3.5) compare
GFF590 -3.3 -3.8 Sugar kinases, ribokinase family compare
GFF1331 -3.2 -14.5 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF3360 -3.2 -23.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF5343 -3.2 -15.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
GFF4889 -3.2 -3.1 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF5566 -3.2 -3.1 FIG002207: Probable transmembrane protein compare
GFF1227 -3.2 -4.3 Carboxyl-terminal protease (EC 3.4.21.102) compare
GFF248 -3.2 -4.4 Glycine oxidase ThiO (EC 1.4.3.19) compare
GFF1842 -3.2 -17.5 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
GFF2447 -3.1 -10.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
GFF1767 -3.1 -3.6 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) compare
GFF5344 -3.1 -7.8 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) compare
GFF3363 -3.1 -11.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF3687 -3.0 -2.6 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF651 -3.0 -7.1 Aspartate carbamoyltransferase (EC 2.1.3.2) compare
GFF4890 -3.0 -9.9 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF1882 -2.9 -9.7 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF652 -2.9 -5.3 Dihydroorotase (EC 3.5.2.3) compare
GFF523 -2.9 -7.9 Dihydroorotase (EC 3.5.2.3) compare
GFF2763 -2.9 -4.7 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF1332 -2.9 -4.9 Shikimate kinase I (EC 2.7.1.71) compare
GFF3355 -2.8 -3.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF1341 -2.8 -5.3 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF3690 -2.8 -3.0 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) compare
GFF2027 -2.7 -8.0 hypothetical protein compare
GFF2507 -2.7 -6.3 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
GFF1222 -2.5 -7.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF1257 -2.4 -3.6 FAD/FMN-containing dehydrogenases compare
GFF1379 -2.4 -15.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
GFF1228 -2.4 -4.5 Sulfur carrier protein adenylyltransferase ThiF compare
GFF5340 -2.4 -3.2 Outer membrane protein A precursor compare
GFF4513 -2.4 -9.4 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
GFF775 -2.3 -2.4 Cell division protein FtsK compare
GFF3682 -2.3 -3.9 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF4893 -2.3 -3.8 Nitrogen regulation protein NR(I) compare
GFF1350 -2.2 -3.9 Cytochrome c-type biogenesis protein Ccs1/ResB compare
GFF222 -2.2 -3.2 ATP-dependent RNA helicase Bcep18194_A5658 compare
GFF3695 -2.2 -2.6 FIG003089: Probable transmembrane protein compare
GFF3692 -2.1 -5.1 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF3694 -2.1 -4.5 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF1841 -2.1 -14.9 GDP-L-fucose synthetase (EC 1.1.1.271) compare
GFF3920 -2.1 -8.8 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
GFF4534 -2.0 -6.0 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF3686 -2.0 -4.2 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF5491 -2.0 -1.9 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF1075 -1.9 -4.3 tRNA-Arg-CCT compare
GFF115 -1.9 -14.5 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF4292 -1.9 -7.8 Oxidoreductase probably involved in sulfite reduction compare
GFF2574 -1.9 -5.8 Methionyl-tRNA formyltransferase (EC 2.1.2.9) compare
GFF1294 -1.8 -5.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
GFF4892 -1.8 -12.4 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF4042 -1.8 -6.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF4293 -1.7 -9.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF581 -1.7 -7.2 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
GFF2539 -1.7 -4.0 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) compare
GFF3107 -1.7 -5.1 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF5767 -1.6 -3.8 Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also] compare
GFF4311 -1.6 -4.9 Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein compare
GFF1293 -1.6 -6.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
GFF1611 -1.6 -10.1 Glycine cleavage system transcriptional activator compare
GFF688 -1.6 -7.3 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF4277 -1.6 -4.5 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF2894 -1.6 -2.8 Putative translation initiation inhibitor, yjgF family compare
GFF2923 -1.5 -6.7 Cytochrome c-type biogenesis protein ResA compare
GFF5226 -1.5 -5.3 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF1764 -1.5 -3.9 Creatinine amidohydrolase (EC 3.5.2.10) compare
GFF689 -1.5 -6.6 Cytochrome c oxidase polypeptide I (EC 1.9.3.1) compare
GFF5734 -1.5 -2.6 Ribosome small subunit-stimulated GTPase EngC compare
GFF2815 -1.5 -4.5 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF1803 -1.4 -2.0 Translation elongation factor G compare
GFF1787 -1.4 -7.8 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF4291 -1.4 -6.1 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
GFF4005 -1.4 -2.3 hypothetical protein compare
GFF3934 -1.3 -7.0 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF4536 -1.3 -4.1 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
GFF779 -1.3 -4.2 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
GFF2443 -1.3 -4.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) compare
GFF3684 -1.3 -2.8 NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF3252 -1.3 -6.2 Serine/threonine protein kinase (EC 2.7.11.1) compare
GFF4930 -1.2 -3.1 Two-component system response regulator OmpR compare
GFF4473 -1.2 -1.2 Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
GFF2573 -1.2 -5.4 Peptide deformylase (EC 3.5.1.88) compare
GFF4289 -1.2 -7.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) compare
GFF4290 -1.2 -6.6 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF2614 -1.2 -2.4 HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-) compare
GFF2567 -1.1 -3.2 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
GFF1847 -1.1 -8.3 hypothetical protein compare
GFF5706 -1.1 -1.9 putative exported protein compare
GFF3880 -1.1 -6.3 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF4888 -1.1 -5.1 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF2512 -1.1 -4.2 Exported zinc metalloprotease YfgC precursor compare
GFF1916 -1.1 -9.4 Probable transmembrane protein compare
GFF3438 -1.1 -5.0 Poly(A) polymerase (EC 2.7.7.19) compare
GFF691 -1.1 -3.7 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
GFF780 -1.1 -2.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF1788 -1.1 -6.2 Probable proline rich signal peptide protein compare
GFF4861 -1.1 -3.4 Mlr7403 protein compare
GFF3253 -1.1 -7.3 Protein phosphatase 2C-like compare
GFF2726 -1.0 -6.9 Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) compare
GFF550 -1.0 -1.9 C4-type zinc finger protein, DksA/TraR family compare
GFF3374 -1.0 -3.1 Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) compare
GFF2737 -1.0 -3.0 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
GFF803 -1.0 -5.0 PQQ-dependent oxidoreductase, gdhB family compare
GFF1071 -1.0 -1.6 hypothetical protein compare
GFF3680 -1.0 -2.6 Preprotein translocase subunit SecG (TC 3.A.5.1.1) compare
GFF2498 -0.9 -5.6 Response regulator receiver:Transcriptional regulatory protein, C- terminal compare
GFF2485 -0.9 -3.5 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
GFF2446 -0.9 -2.1 RNA-binding protein compare
GFF4523 -0.9 -5.1 FIG000859: hypothetical protein YebC compare
GFF2936 -0.9 -2.9 Proposed lipoate regulatory protein YbeD compare
GFF2615 -0.9 -2.6 Ferric uptake regulation protein FUR compare
GFF5790 -0.9 -1.1 tRNA-Leu-TAG compare
GFF3519 -0.9 -2.4 Transcriptional regulator, LysR family compare
GFF2973 -0.9 -1.2 TRAP-type C4-dicarboxylate transport system, small permease component compare
GFF1376 -0.9 -7.4 Outer membrane porin protein 32 precursor; putative 3-hydroxyphenylpropionic acid porine compare
GFF724 -0.9 -4.4 Ornithine cyclodeaminase (EC 4.3.1.12) compare
GFF5228 -0.9 -6.5 Transcriptional regulator, TetR family compare
GFF3907 -0.8 -2.5 Thiamin biosynthesis lipoprotein ApbE compare
GFF770 -0.8 -6.3 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF1153 -0.8 -1.1 Transcriptional regulator, LysR family compare
GFF748 -0.8 -1.6 Tricarboxylate transport protein TctB compare
GFF5561 -0.8 -2.4 Topoisomerase IV subunit B (EC 5.99.1.-) compare
GFF5450 -0.8 -1.8 hypothetical protein compare
GFF1860 -0.8 -6.5 Radical SAM compare
GFF1267 -0.8 -5.5 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 compare
GFF2718 -0.8 -4.1 21 kDa hemolysin precursor compare
GFF695 -0.8 -4.2 Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion compare
GFF547 -0.8 -2.7 Tyrosine recombinase XerC compare
GFF5113 -0.8 -0.9 Glutathione S-transferase (EC 2.5.1.18) compare
GFF693 -0.8 -1.6 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) compare
GFF1129 -0.8 -1.8 Heavy metal RND efflux outer membrane protein, CzcC family compare
GFF2235 -0.8 -2.4 Maebl compare
GFF5501 -0.8 -1.5 DNA-binding domain of ModE compare
GFF1610 -0.8 -1.2 hypothetical protein compare
GFF781 -0.8 -1.0 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF4294 -0.8 -5.3 Putative sulfate permease compare
GFF1497 -0.8 -1.6 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) compare
GFF5110 -0.7 -4.0 Phytoene synthase (EC 2.5.1.32) compare
GFF1411 -0.7 -1.9 Flagellar basal-body rod protein FlgF compare
GFF5322 -0.7 -1.3 hypothetical protein compare
GFF2675 -0.7 -1.7 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) compare
GFF676 -0.7 -4.7 Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-) compare
GFF1544 -0.7 -3.0 Transcriptional regulatory protein compare
GFF4521 -0.7 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF5397 -0.7 -2.1 Cytochrome C550 (Soluble cytochrome C) compare
GFF2689 -0.7 -1.5 Glycine betaine transporter OpuD compare
GFF1666 -0.7 -1.8 Holliday junction DNA helicase RuvA compare
GFF3941 -0.7 -0.9 GCN5-related N-acetyltransferase compare
GFF697 -0.7 -4.1 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
GFF1698 -0.7 -0.9 Ferredoxin compare
GFF39 -0.7 -2.7 hypothetical protein compare
GFF4962 -0.7 -2.1 Excinuclease ABC subunit B compare
GFF4700 -0.7 -1.8 tRNA-specific adenosine-34 deaminase (EC 3.5.4.-) / domain of unknown function compare
GFF3074 -0.7 -0.9 hypothetical protein compare
GFF4138 -0.7 -2.0 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
GFF546 -0.7 -2.8 Protein of unknown function DUF484 compare
GFF4979 -0.7 -2.0 Positive regulator of Tartrate dehydrogenase/decarboxylase/D-malic enzyme compare


Specific Phenotypes

None in this experiment

For Hydrogenophaga sp. GW460-11-11-14-LB1 in carbon source experiments

For carbon source Ying_OrganicAcid7 across organisms