Experiment set1S300 for Hydrogenophaga sp. GW460-11-11-14-LB1

Compare to:

Ying_OrganicAcid7 rep C; time point 1

200 most detrimental genes:

  gene name fitness t score description  
GFF2877 +1.3 3.6 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
GFF4004 +1.2 2.9 LysR family regulatory protein compare
GFF513 +1.0 2.9 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF366 +0.9 2.2 Probable transmembrane protein compare
GFF3498 +0.9 2.8 DNA repair protein RadC compare
GFF177 +0.9 1.5 Demethylmenaquinone methyltransferase compare
GFF3853 +0.9 2.0 DNA-binding protein HU-beta compare
GFF1041 +0.8 2.7 Aerotaxis sensor receptor protein compare
GFF2635 +0.8 3.1 Transcriptional regulator, HxlR family compare
GFF4306 +0.8 1.5 Sirohydrochlorin cobaltochelatase (EC 4.99.1.3) compare
GFF5528 +0.8 2.1 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF1186 +0.8 1.4 General secretion pathway protein N compare
GFF59 +0.7 2.3 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
GFF5696 +0.7 1.3 PROBABLE TRANSMEMBRANE PROTEIN compare
GFF2563 +0.7 1.7 hypothetical protein compare
GFF4424 +0.7 1.4 Regulatory protein, LuxR:Tetratricopeptide TPR_4 compare
GFF5230 +0.7 3.0 TRAP-type C4-dicarboxylate transport system, large permease component compare
GFF5076 +0.7 2.0 Alkanesulfonates transport system permease protein compare
GFF3255 +0.7 3.1 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
GFF2536 +0.7 2.8 two-component hybrid sensor and regulator compare
GFF1387 +0.6 3.1 General secretion pathway protein L compare
GFF3618 +0.6 2.1 Putative fumarylacetoacetate (FAA) hydrolase compare
GFF1531 +0.6 1.4 putative exported protein compare
GFF5521 +0.6 1.7 peptidoglycan binding domain protein compare
GFF3838 +0.6 1.8 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF3743 +0.6 1.3 Aspartate dehydrogenase homolog compare
GFF3010 +0.6 1.8 3-oxoacyl-[ACP] synthase compare
GFF2209 +0.6 1.4 Uptake hydrogenase small subunit precursor (EC 1.12.99.6) compare
GFF786 +0.6 1.4 probable polyketide cyclase compare
GFF2142 +0.6 2.8 hypothetical protein compare
GFF926 +0.6 1.0 MaoC family protein compare
GFF312 +0.6 1.0 Mobile element protein compare
GFF3178 +0.6 1.9 Death on curing protein, Doc toxin compare
GFF5711 +0.6 1.0 hypothetical protein compare
GFF3244 +0.6 2.8 Rhodanese-related sulfurtransferases compare
GFF5130 +0.6 1.7 Tricarboxylate transport transcriptional regulator TctD compare
GFF55 +0.6 1.3 EpsI protein compare
GFF4023 +0.6 1.3 PUTATIVE METHYLTRANSFERASE compare
GFF3759 +0.6 2.0 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
GFF2244 +0.6 1.5 putative exported protein compare
GFF361 +0.6 1.7 ABC, transporter, ATP-binding protein compare
GFF138 +0.6 1.7 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
GFF339 +0.5 2.3 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF4034 +0.5 1.9 Chromosome initiation inhibitor compare
GFF456 +0.5 1.2 hypothetical protein compare
GFF1985 +0.5 1.9 hypothetical protein compare
GFF2243 +0.5 1.9 Tricarboxylate transport protein TctC compare
GFF3400 +0.5 1.4 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
GFF589 +0.5 1.1 Probable transmembrane protein compare
GFF3279 +0.5 1.5 Urea ABC transporter, ATPase protein UrtE compare
GFF5611 +0.5 1.5 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
GFF2231 +0.5 1.5 hypothetical protein compare
GFF3259 +0.5 1.7 hypothetical protein compare
GFF2391 +0.5 0.9 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
GFF4084 +0.5 1.8 ubiquinone/menaquinone biosynthesis methyltransferase compare
GFF1194 +0.5 0.8 Formate dehydrogenase subunit or accessory protein compare
GFF185 +0.5 1.3 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
GFF3494 +0.5 3.1 hypothetical protein compare
GFF4057 +0.5 1.3 Flagellar assembly protein FliH compare
GFF1560 +0.5 2.2 Fumarylacetoacetate hydrolase family protein compare
GFF3283 +0.5 1.9 Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8) compare
GFF1674 +0.5 1.6 (Y14336) putative extracellular protein containing predicted 35aa signal peptide compare
GFF3402 +0.5 0.8 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF3928 +0.5 2.4 LSU ribosomal protein L9p compare
GFF2113 +0.5 0.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF4152 +0.5 1.4 FIG050068: DNA-binding protein compare
GFF5630 +0.5 0.8 Transcriptional regulator, AraC family compare
GFF4074 +0.5 1.2 Flagellar basal-body rod modification protein FlgD compare
GFF3971 +0.5 2.0 DNA topoisomerase III (EC 5.99.1.2) compare
GFF991 +0.5 2.1 hypothetical protein compare
GFF1929 +0.5 1.6 hypothetical protein compare
GFF1913 +0.5 1.6 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF2847 +0.5 1.4 hypothetical protein compare
GFF4417 +0.5 0.8 Electron transfer flavoprotein, beta subunit compare
GFF468 +0.5 1.3 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
GFF57 +0.5 0.7 hypothetical protein compare
GFF5301 +0.5 1.6 hypothetical protein compare
GFF3394 +0.5 1.2 Dioxygenases related to 2-nitropropane dioxygenase compare
GFF4865 +0.5 1.7 Type IV pilus biogenesis protein PilF compare
GFF4610 +0.5 1.3 hypothetical protein compare
GFF984 +0.5 0.9 hypothetical protein compare
GFF2813 +0.5 1.0 FIG00761799: membrane protein compare
GFF5744 +0.5 1.4 FIG00931343: hypothetical protein compare
GFF5833 +0.4 1.5 Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) compare
GFF5783 +0.4 2.8 Mobile element protein compare
GFF2537 +0.4 2.8 Two-component response regulator compare
GFF4976 +0.4 2.3 Maebl compare
GFF4359 +0.4 2.7 IS, phage, Tn; Transposon-related functions compare
GFF4997 +0.4 1.8 Tricarboxylate transport protein TctC compare
GFF2041 +0.4 1.4 hypothetical protein compare
GFF5003 +0.4 1.2 Adenylate cyclase (EC 4.6.1.1) compare
GFF2576 +0.4 0.7 Probable transmembrane protein compare
GFF1461 +0.4 1.1 Flagellar biosynthesis protein FliP compare
GFF432 +0.4 2.0 Tricarboxylate transport protein TctC compare
GFF2645 +0.4 2.4 Glutamate--cysteine ligase (EC 6.3.2.2), divergent, of Alpha- and Beta-proteobacteria type compare
GFF3481 +0.4 1.1 Glycosidases compare
GFF4980 +0.4 1.1 Sugar phosphate isomerases/epimerases compare
GFF533 +0.4 1.3 hypothetical protein compare
GFF4767 +0.4 2.6 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) AsnH compare
GFF202 +0.4 0.7 Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) compare
GFF4418 +0.4 1.4 Electron transfer flavoprotein, alpha subunit compare
GFF519 +0.4 2.0 Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4) compare
GFF5608 +0.4 1.1 hypothetical protein compare
GFF3262 +0.4 2.5 Urease accessory protein UreG compare
GFF4025 +0.4 1.4 Transcriptional regulator, AraC family compare
GFF253 +0.4 1.9 cytochrome c subunit of flavocytochrome c sulfide dehydrogenase compare
GFF5438 +0.4 0.6 Nitroreductase family protein compare
GFF1468 +0.4 0.9 putative inner membrane protein compare
GFF5128 +0.4 1.2 Tricarboxylate transport protein TctB compare
GFF2922 +0.4 0.8 putative c'cytochrome compare
GFF4013 +0.4 1.1 hypothetical protein compare
GFF5639 +0.4 0.6 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
GFF2595 +0.4 1.5 hypothetical protein compare
GFF323 +0.4 1.5 Probable sulfite reductase compare
GFF2889 +0.4 1.4 Rubisco activation protein CbbQ compare
GFF3007 +0.4 1.0 Polysaccharide deacetylase compare
GFF796 +0.4 1.3 TRAP-type C4-dicarboxylate transport system, small permease component compare
GFF5323 +0.4 0.7 hypothetical protein compare
GFF3752 +0.4 0.7 Hydroxymethylpyrimidine ABC transporter, ATPase component compare
GFF4499 +0.4 1.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF5676 +0.4 2.0 NAD(P)H oxidoreductase YRKL (EC 1.6.99.-) @ Putative NADPH-quinone reductase (modulator of drug activity B) @ Flavodoxin 2 compare
GFF4205 +0.4 2.3 hypothetical protein compare
GFF190 +0.4 1.7 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
GFF3426 +0.4 1.6 hypothetical protein compare
GFF1517 +0.4 1.6 hypothetical protein compare
GFF2687 +0.4 1.9 putative exported protein compare
GFF2428 +0.4 1.4 TRAP-type C4-dicarboxylate transport system, small permease component compare
GFF4974 +0.4 1.2 hypothetical protein compare
GFF4191 +0.4 2.2 Uncharacterized protein conserved in bacteria compare
GFF554 +0.4 1.8 Cell division protein MraZ compare
GFF618 +0.4 1.5 YaeQ protein compare
GFF5105 +0.4 1.2 Transcriptional regulator, MerR family compare
GFF5358 +0.4 2.2 Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16) compare
GFF324 +0.4 0.7 FIG00537944: hypothetical protein compare
GFF4690 +0.4 1.9 hypothetical protein compare
GFF4062 +0.4 1.1 hypothetical protein compare
GFF2067 +0.4 1.5 hypothetical protein compare
GFF4772 +0.4 2.5 Glycine-rich cell wall structural protein precursor compare
GFF484 +0.4 0.6 Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) compare
GFF612 +0.4 1.0 Putative sensor-like histidine kinase YfhK compare
GFF1291 +0.4 1.8 ClpXP protease specificity-enhancing factor / Stringent starvation protein B compare
GFF5436 +0.4 1.2 ABC-type tungstate transport system, permease protein compare
GFF420 +0.4 1.1 Salicylate hydroxylase (EC 1.14.13.1) compare
GFF4760 +0.4 2.4 hypothetical protein compare
GFF5602 +0.4 0.9 Inositol transport system sugar-binding protein compare
GFF3555 +0.4 1.7 Fatty acid desaturase compare
GFF3241 +0.4 1.3 hypothetical protein compare
GFF2562 +0.4 2.5 hypothetical protein compare
GFF5256 +0.4 1.0 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
GFF2176 +0.4 0.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF3750 +0.4 1.8 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
GFF4784 +0.4 0.7 Phospholipid N-methyltransferase compare
GFF2252 +0.4 1.4 FIG01094124: hypothetical protein compare
GFF658 +0.4 2.3 Glutathione S-transferase N-terminal domain protein (EC 2.5.1.18) compare
GFF573 +0.4 1.5 Phosphatidate cytidylyltransferase (EC 2.7.7.41) compare
GFF4601 +0.4 0.7 Phenylacetic acid degradation protein paaI compare
GFF5587 +0.4 2.1 FIGfam005179 compare
GFF3289 +0.4 1.9 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
GFF4433 +0.4 1.8 Type IV secretion system protein VirD4 compare
GFF1049 +0.4 1.0 Nitrite-sensitive transcriptional repressor NsrR compare
GFF3799 +0.4 1.7 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17) compare
GFF2031 +0.4 1.9 hypothetical protein compare
GFF3455 +0.4 1.1 Type IV secretion system protein VirD4 compare
GFF1440 +0.4 2.4 Flagellin protein FlaA compare
GFF2618 +0.4 1.6 MotA/TolQ/ExbB proton channel family protein compare
GFF2902 +0.4 1.4 Tricarboxylate transport protein TctC compare
GFF331 +0.4 1.2 hypothetical protein compare
GFF4573 +0.4 2.2 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
GFF422 +0.4 1.0 putative Metapyrocatechase (MPC) (CatO2ase) (Catechol 2,3- dioxygenase)( EC:1.13.11.2 ) compare
GFF3135 +0.4 1.0 IncF plasmid conjugative transfer pilus assembly protein TraF compare
GFF3909 +0.4 0.7 Iron-uptake factor PiuC compare
GFF2558 +0.4 1.0 hypothetical protein compare
GFF1720 +0.4 2.0 Trk system potassium uptake protein TrkA compare
GFF1905 +0.4 0.7 membrane protein, putative compare
GFF2728 +0.4 2.5 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
GFF240 +0.3 0.8 SlyX protein compare
GFF209 +0.3 1.5 Hypothetical protein with Rieske (2Fe-2S) region compare
GFF2854 +0.3 0.9 Probable hydrolase compare
GFF2896 +0.3 1.0 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
GFF10 +0.3 1.4 N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) compare
GFF4741 +0.3 2.4 conserved hypothetical protein, possible esterase/lipase/thioesterase compare
GFF3221 +0.3 1.6 hypothetical protein compare
GFF2460 +0.3 1.6 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
GFF71 +0.3 0.9 Predicted secretion system X protein GspD-like compare
GFF2535 +0.3 2.1 FIG003879: Predicted amidohydrolase compare
GFF875 +0.3 1.7 Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) compare
GFF5053 +0.3 1.5 Predicted metal-dependent membrane protease compare
GFF5234 +0.3 1.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF1027 +0.3 1.6 Ferredoxin, 2Fe-2S compare
GFF1871 +0.3 1.0 Hypothetical metal-binding enzyme, YcbL homolog compare
GFF1028 +0.3 0.8 putative cytochrome P450 hydroxylase compare
GFF373 +0.3 1.0 TcuR: regulates tcuABC genes used in utilization of tricarballylate compare
GFF4401 +0.3 0.8 Type IV secretory pathway, protease TraF compare
GFF482 +0.3 0.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF5015 +0.3 2.1 TRAP-type C4-dicarboxylate transport system, periplasmic component compare
GFF5538 +0.3 0.6 hypothetical protein compare
GFF710 +0.3 2.3 Nudix hydrolase family protein compare
GFF184 +0.3 1.6 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
GFF5640 +0.3 1.1 Extracellular ligand-binding receptor compare
GFF28 +0.3 0.9 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare


Specific Phenotypes

None in this experiment

For Hydrogenophaga sp. GW460-11-11-14-LB1 in carbon source experiments

For carbon source Ying_OrganicAcid7 across organisms