Experiment set1S3 for Fusobacterium nucleatum SB010

Compare to:

Time0_primer_test

200 most important genes:

  gene name fitness t score description  
HUW76_01765 -2.0 -7.9 peptidylprolyl isomerase compare
HUW76_07275 -1.9 -1.7 cell division protein SepF compare
HUW76_03030 -1.9 -3.5 NusG domain II-containing protein compare
HUW76_00550 -1.8 -2.7 hypothetical protein compare
HUW76_03330 -1.6 -1.6 helix-turn-helix domain-containing protein compare
HUW76_05470 -1.5 -1.7 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
HUW76_01855 -1.5 -5.0 CoA transferase subunit B compare
HUW76_04750 -1.4 -1.8 acyl-CoA dehydrogenase compare
HUW76_10640 -1.3 -6.7 NCS2 family permease compare
HUW76_02665 -1.2 -2.8 anaerobic ribonucleoside-triphosphate reductase compare
HUW76_09715 -1.1 -5.1 electron transport complex subunit RsxA compare
HUW76_00610 -1.1 -1.8 hypothetical protein compare
HUW76_09725 -1.0 -2.9 RnfABCDGE type electron transport complex subunit G compare
HUW76_06010 -1.0 -5.7 thiamine diphosphokinase compare
HUW76_06480 -1.0 -7.9 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HUW76_00590 -1.0 -3.4 molecular chaperone DnaK compare
HUW76_01840 -1.0 -2.7 hypothetical protein compare
HUW76_00645 -0.9 -1.9 tRNA-Thr compare
HUW76_04760 -0.9 -3.9 electron transfer flavoprotein subunit alpha/FixB family protein compare
HUW76_01215 -0.9 -6.6 hypothetical protein compare
HUW76_10330 -0.9 -3.7 FAD:protein FMN transferase compare
HUW76_09730 -0.9 -3.3 RnfABCDGE type electron transport complex subunit D compare
HUW76_06970 -0.8 -5.1 SpoIID/LytB domain-containing protein compare
HUW76_02935 -0.8 -1.4 50S ribosomal protein L13 compare
HUW76_03135 -0.8 -2.6 Gx transporter family protein compare
HUW76_09720 -0.8 -3.6 electron transport complex subunit E compare
HUW76_04385 -0.8 -3.8 DNA polymerase I compare
HUW76_00520 -0.8 -0.6 ribonucleotide-diphosphate reductase subunit beta compare
HUW76_01020 -0.8 -2.8 ribosome maturation factor RimP compare
HUW76_01850 -0.8 -2.1 CoA transferase subunit A compare
HUW76_00600 -0.8 -4.0 molecular chaperone DnaJ compare
HUW76_07535 -0.7 -2.2 LysR family transcriptional regulator compare
HUW76_10265 -0.6 -4.1 thiamine phosphate synthase compare
HUW76_00285 -0.6 -2.6 hypothetical protein compare
HUW76_00615 -0.6 -1.0 hypothetical protein compare
HUW76_09030 -0.6 -1.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HUW76_09735 -0.6 -3.6 electron transport complex subunit RsxC compare
HUW76_05835 -0.6 -0.9 hypothetical protein compare
HUW76_02540 -0.6 -3.9 sodium/glutamate symporter compare
HUW76_07710 -0.6 -2.0 hypothetical protein compare
HUW76_04765 -0.6 -2.3 hypothetical protein compare
HUW76_04445 -0.6 -2.6 rRNA pseudouridine synthase compare
HUW76_00045 -0.6 -1.2 metallophosphoesterase compare
HUW76_03695 -0.6 -3.2 DUF1858 domain-containing protein compare
HUW76_02815 -0.6 -3.7 DUF4911 domain-containing protein compare
HUW76_01065 -0.6 -4.4 endopeptidase La compare
HUW76_02075 -0.6 -3.4 MotA/TolQ/ExbB proton channel family protein compare
HUW76_10570 -0.6 -2.8 hypothetical protein compare
HUW76_04625 -0.6 -1.9 rRNA pseudouridine synthase compare
HUW76_03465 -0.6 -2.9 hypothetical protein compare
HUW76_09035 -0.6 -2.9 adenine phosphoribosyltransferase compare
HUW76_00525 -0.6 -3.6 thioredoxin family protein compare
HUW76_06905 -0.5 -1.9 AAA family ATPase compare
HUW76_01845 -0.5 -3.1 short-chain fatty acid transporter compare
HUW76_02580 -0.5 -1.7 MgtC/SapB family protein compare
HUW76_03315 -0.5 -4.0 sigma-70 family RNA polymerase sigma factor compare
HUW76_00310 -0.5 -1.0 hypothetical protein compare
HUW76_05065 -0.5 -1.2 hypothetical protein compare
HUW76_09475 -0.5 -2.1 ferredoxin family protein compare
HUW76_03565 -0.5 -1.0 preprotein translocase subunit YajC compare
HUW76_06015 -0.5 -2.7 endonuclease/exonuclease/phosphatase family protein compare
HUW76_05855 -0.5 -3.5 glycogen synthase compare
HUW76_10115 -0.5 -1.9 ATP-dependent zinc metalloprotease FtsH compare
HUW76_10580 -0.5 -2.5 hypothetical protein compare
HUW76_02910 -0.5 -0.9 tRNA-Ser compare
HUW76_08085 -0.5 -3.6 formate C-acetyltransferase compare
HUW76_03900 -0.5 -3.5 YbaB/EbfC family nucleoid-associated protein compare
HUW76_07820 -0.5 -1.6 hypothetical protein compare
HUW76_04110 -0.5 -3.1 uracil-DNA glycosylase compare
HUW76_02860 -0.5 -1.5 DUF2156 domain-containing protein compare
HUW76_04185 -0.5 -3.3 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB compare
HUW76_05080 -0.5 -2.8 GNAT family N-acetyltransferase compare
HUW76_03270 -0.5 -0.8 AAA family ATPase compare
HUW76_00900 -0.4 -2.0 tRNA-Ala compare
HUW76_01200 -0.4 -2.4 ATP-binding protein compare
HUW76_03865 -0.4 -2.7 cytidylate kinase-like family protein compare
HUW76_08310 -0.4 -1.4 hypothetical protein compare
HUW76_10465 -0.4 -2.5 DUF896 domain-containing protein compare
HUW76_00595 -0.4 -2.1 methylated-DNA--[protein]-cysteine S-methyltransferase compare
HUW76_05675 -0.4 -2.5 5-formyltetrahydrofolate cyclo-ligase compare
HUW76_04290 -0.4 -1.2 hypothetical protein compare
HUW76_10485 -0.4 -1.9 hypothetical protein compare
HUW76_03760 -0.4 -3.1 GNAT family N-acetyltransferase compare
HUW76_04755 -0.4 -1.2 electron transfer flavoprotein subunit beta/FixA family protein compare
HUW76_06750 -0.4 -2.0 DNA starvation/stationary phase protection protein compare
HUW76_03660 -0.4 -3.2 Nif3-like dinuclear metal center hexameric protein compare
HUW76_10295 -0.4 -2.2 thiamine phosphate synthase compare
HUW76_06705 -0.4 -3.2 CoA-disulfide reductase compare
HUW76_04045 -0.4 -3.0 polysaccharide deacetylase family protein compare
HUW76_02590 -0.4 -1.1 Crp/Fnr family transcriptional regulator compare
HUW76_04265 -0.4 -2.6 RloB domain-containing protein compare
HUW76_10515 -0.4 -2.4 GlsB/YeaQ/YmgE family stress response membrane protein compare
HUW76_10675 -0.4 -0.6 RNA-binding S4 domain-containing protein compare
HUW76_02940 -0.4 -1.7 30S ribosomal protein S9 compare
HUW76_01700 -0.4 -3.1 glucosaminidase domain-containing protein compare
HUW76_06765 -0.4 -2.1 glutaredoxin compare
HUW76_05455 -0.4 -2.1 NUDIX domain-containing protein compare
HUW76_02085 -0.4 -3.0 energy transducer TonB compare
HUW76_03845 -0.4 -1.1 hypothetical protein compare
HUW76_09290 -0.4 -2.6 riboflavin synthase compare
HUW76_08010 -0.4 -2.0 pyridoxamine 5'-phosphate oxidase family protein compare
HUW76_06145 -0.4 -2.1 N-glycosylase/DNA lyase compare
HUW76_00725 -0.4 -2.6 TetR/AcrR family transcriptional regulator compare
HUW76_07185 -0.4 -2.6 hypothetical protein compare
HUW76_10820 -0.4 -0.8 hypothetical protein compare
HUW76_04500 -0.4 -2.2 nucleotidyltransferase compare
HUW76_03915 -0.4 -2.9 tetratricopeptide repeat protein compare
HUW76_00735 -0.4 -1.6 peptidylprolyl isomerase compare
HUW76_08670 -0.4 -2.7 hypothetical protein compare
HUW76_01460 -0.4 -2.4 YebC/PmpR family DNA-binding transcriptional regulator compare
HUW76_08285 -0.4 -1.3 heavy-metal-associated domain-containing protein compare
HUW76_00780 -0.4 -1.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HUW76_06680 -0.4 -1.7 Rrf2 family transcriptional regulator compare
HUW76_09940 -0.4 -2.1 type II toxin-antitoxin system YafQ family toxin compare
HUW76_10435 -0.4 -2.5 exodeoxyribonuclease III compare
HUW76_06960 -0.4 -1.8 ATP-binding cassette domain-containing protein compare
HUW76_02810 -0.4 -2.3 ribosomal RNA small subunit methyltransferase A compare
HUW76_02600 -0.3 -1.9 response regulator transcription factor compare
HUW76_08090 -0.3 -2.3 pyruvate formate lyase-activating protein compare
HUW76_08550 -0.3 -1.9 chemotaxis protein compare
HUW76_03880 -0.3 -2.3 efflux RND transporter periplasmic adaptor subunit compare
HUW76_09280 -0.3 -2.2 6,7-dimethyl-8-ribityllumazine synthase compare
HUW76_03150 -0.3 -1.4 signal peptidase I compare
HUW76_01985 -0.3 -1.9 EutN/CcmL family microcompartment protein compare
HUW76_03870 -0.3 -1.9 hypothetical protein compare
HUW76_05770 -0.3 -2.5 hypothetical protein compare
HUW76_09320 -0.3 -1.0 hypothetical protein compare
HUW76_07725 -0.3 -2.3 hypothetical protein compare
HUW76_02835 -0.3 -2.1 RNA methyltransferase compare
HUW76_00465 -0.3 -0.5 thioredoxin compare
HUW76_06795 -0.3 -2.2 tyrosine-type recombinase/integrase compare
HUW76_03550 -0.3 -2.3 hypothetical protein compare
HUW76_01240 -0.3 -1.7 glyoxalase compare
HUW76_05660 -0.3 -1.3 hypothetical protein compare
HUW76_04105 -0.3 -1.6 SMI1/KNR4 family protein compare
HUW76_05755 -0.3 -1.7 site-specific integrase compare
HUW76_08665 -0.3 -1.6 nuclear transport factor 2 family protein compare
HUW76_04060 -0.3 -1.7 hypothetical protein compare
HUW76_01790 -0.3 -1.1 3-aminobutyryl-CoA ammonia-lyase compare
HUW76_06385 -0.3 -1.8 SIR2 family protein compare
HUW76_08210 -0.3 -2.2 glutaminase A compare
HUW76_09285 -0.3 -2.5 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
HUW76_04425 -0.3 -2.0 chromate transporter compare
HUW76_05560 -0.3 -0.3 hypothetical protein compare
HUW76_06615 -0.3 -2.0 DUF1007 family protein compare
HUW76_05690 -0.3 -1.5 SDR family NAD(P)-dependent oxidoreductase compare
HUW76_05760 -0.3 -1.0 Dabb family protein compare
HUW76_00095 -0.3 -1.4 hypothetical protein compare
HUW76_00770 -0.3 -1.4 MliC family protein compare
HUW76_06005 -0.3 -1.3 thioesterase family protein compare
HUW76_07305 -0.3 -1.8 VWA domain-containing protein compare
HUW76_09090 -0.3 -0.2 rod shape-determining protein MreC compare
HUW76_03995 -0.3 -2.0 iron transporter compare
HUW76_02735 -0.3 -1.7 replication-associated recombination protein A compare
HUW76_09640 -0.3 -1.5 GIY-YIG nuclease family protein compare
HUW76_03560 -0.3 -1.6 hypothetical protein compare
HUW76_00700 -0.3 -1.7 hypothetical protein compare
HUW76_01760 -0.3 -1.5 DJ-1/PfpI family protein compare
HUW76_02855 -0.3 -1.9 dipeptidase PepV compare
HUW76_10035 -0.3 -1.4 ABC transporter ATP-binding protein compare
HUW76_01980 -0.3 -1.9 heme-binding protein compare
HUW76_00530 -0.3 -2.0 flavin reductase family protein compare
HUW76_10840 -0.3 -2.2 hypothetical protein compare
HUW76_05275 -0.3 -1.6 hypothetical protein compare
HUW76_07400 -0.3 -0.7 preprotein translocase subunit SecG compare
HUW76_04970 -0.3 -2.0 insulinase family protein compare
HUW76_00150 -0.3 -1.4 hypothetical protein compare
HUW76_01150 -0.3 -2.3 ArsB/NhaD family transporter compare
HUW76_07850 -0.3 -1.7 ribosome-associated translation inhibitor RaiA compare
HUW76_01530 -0.3 -1.5 DUF2273 domain-containing protein compare
HUW76_06860 -0.3 -1.9 hypothetical protein compare
HUW76_07945 -0.3 -1.7 5-oxoprolinase subunit PxpB compare
HUW76_06560 -0.3 -2.0 ROK family protein compare
HUW76_10345 -0.3 -2.1 YicC family protein compare
HUW76_05360 -0.3 -1.2 DMP19 family protein compare
HUW76_08945 -0.3 -2.0 MerR family transcriptional regulator compare
HUW76_04640 -0.3 -1.6 septum formation protein Maf compare
HUW76_00430 -0.3 -1.4 ethanolamine utilization protein EutN compare
HUW76_05905 -0.3 -1.3 Bax inhibitor-1/YccA family protein compare
HUW76_06580 -0.3 -2.2 MFS transporter compare
HUW76_03600 -0.3 -1.1 exodeoxyribonuclease VII small subunit compare
HUW76_04515 -0.3 -1.8 methyltransferase domain-containing protein compare
HUW76_05395 -0.3 -1.8 cation transporter compare
HUW76_09335 -0.3 -2.0 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
HUW76_06930 -0.3 -1.9 amino acid ABC transporter permease compare
HUW76_06820 -0.3 -1.5 exodeoxyribonuclease VII large subunit compare
HUW76_06130 -0.3 -1.8 extracellular solute-binding protein compare
HUW76_02680 -0.3 -1.6 ABC transporter substrate-binding protein compare
HUW76_07060 -0.3 -2.2 GTPase HflX compare
HUW76_00815 -0.3 -1.8 hypothetical protein compare
HUW76_02315 -0.3 -1.1 hypothetical protein compare
HUW76_05095 -0.3 -1.0 TetR/AcrR family transcriptional regulator compare
HUW76_05530 -0.3 -1.1 hypothetical protein compare
HUW76_04805 -0.3 -2.0 pyruvate, phosphate dikinase compare
HUW76_06310 -0.3 -1.9 zinc ABC transporter substrate-binding protein compare
HUW76_01810 -0.3 -1.6 hypothetical protein compare
HUW76_01525 -0.3 -1.5 alkaline shock response membrane anchor protein AmaP compare
HUW76_00825 -0.3 -1.5 HPr family phosphocarrier protein compare
HUW76_02690 -0.3 -1.8 iron ABC transporter permease compare
HUW76_03690 -0.3 -1.4 energy transducer TonB compare


Specific Phenotypes

None in this experiment

For Fusobacterium nucleatum SB010 in time0_primer_test experiments