Experiment set1S295 for Hydrogenophaga sp. GW460-11-11-14-LB1

Compare to:

Ying_AminoAcid20 rep A; time point 1

200 most important genes:

  gene name fitness t score description  
GFF5497 -5.4 -15.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF248 -5.3 -3.7 Glycine oxidase ThiO (EC 1.4.3.19) compare
GFF249 -4.7 -4.8 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
GFF5584 -4.6 -11.6 DNA polymerase I (EC 2.7.7.7) compare
GFF5771 -4.6 -9.4 dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL compare
GFF523 -4.6 -7.7 Dihydroorotase (EC 3.5.2.3) compare
GFF2763 -4.6 -4.4 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF1862 -4.6 -17.4 Probable glycosyltransferase compare
GFF3326 -4.5 -15.8 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
GFF5566 -4.5 -3.2 FIG002207: Probable transmembrane protein compare
GFF1844 -4.4 -24.4 Aminotransferase compare
GFF1845 -4.4 -18.1 O-antigen export system, permease protein compare
GFF1853 -4.4 -19.8 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
GFF1864 -4.4 -10.9 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) compare
GFF1839 -4.3 -11.5 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
GFF1846 -4.3 -24.8 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
GFF1856 -4.2 -24.7 hypothetical protein compare
GFF245 -4.2 -3.8 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
GFF1855 -4.2 -25.0 N-acetylneuraminate synthase (EC 2.5.1.56) compare
GFF1854 -4.2 -11.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF1848 -4.1 -20.9 hypothetical protein compare
GFF1861 -4.1 -27.9 identified by sequence similarity; putative; ORF located using Blastx/Glimmer compare
GFF3690 -4.0 -2.7 NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) compare
GFF1843 -4.0 -20.9 hypothetical protein compare
GFF5772 -4.0 -2.7 Phosphomannomutase (EC 5.4.2.8) compare
GFF1851 -3.9 -24.4 hypothetical protein compare
GFF4211 -3.9 -8.3 Dihydroorotate dehydrogenase (EC 1.3.3.1) compare
GFF3324 -3.9 -17.3 Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) compare
GFF1354 -3.8 -5.2 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
GFF1882 -3.8 -8.9 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
GFF2894 -3.8 -3.6 Putative translation initiation inhibitor, yjgF family compare
GFF4731 -3.8 -15.9 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
GFF1859 -3.7 -20.9 CgeB family protein compare
GFF1227 -3.7 -3.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
GFF5768 -3.7 -9.7 Putative O-antigen biosynthesis protein precursor compare
GFF3692 -3.6 -6.0 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF3682 -3.6 -4.9 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF5766 -3.6 -5.4 PMID: 11481431 compare
GFF1858 -3.6 -11.9 glycosyl transferase family 2 compare
GFF1767 -3.5 -3.4 Cytochrome c-type biogenesis protein DsbD, protein-disulfide reductase (EC 1.8.1.8) compare
GFF1865 -3.5 -20.7 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
GFF1842 -3.5 -23.0 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
GFF1228 -3.2 -3.9 Sulfur carrier protein adenylyltransferase ThiF compare
GFF1222 -3.2 -9.5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF3694 -3.2 -4.7 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF3698 -3.1 -3.6 NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4) compare
GFF590 -3.0 -4.1 Sugar kinases, ribokinase family compare
GFF3686 -3.0 -4.8 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF651 -2.9 -7.0 Aspartate carbamoyltransferase (EC 2.1.3.2) compare
GFF1803 -2.7 -3.1 Translation elongation factor G compare
GFF1841 -2.7 -19.5 GDP-L-fucose synthetase (EC 1.1.1.271) compare
GFF709 -2.7 -3.9 Cysteine synthase B (EC 2.5.1.47) compare
GFF2027 -2.6 -8.6 hypothetical protein compare
GFF652 -2.6 -3.8 Dihydroorotase (EC 3.5.2.3) compare
GFF2512 -2.5 -6.6 Exported zinc metalloprotease YfgC precursor compare
GFF1294 -2.5 -5.2 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
GFF1341 -2.5 -5.9 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF2573 -2.5 -9.4 Peptide deformylase (EC 3.5.1.88) compare
GFF4042 -2.4 -8.3 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF3687 -2.3 -4.2 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF1350 -2.2 -3.6 Cytochrome c-type biogenesis protein Ccs1/ResB compare
GFF1293 -2.2 -6.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
GFF2574 -2.2 -6.4 Methionyl-tRNA formyltransferase (EC 2.1.2.9) compare
GFF1847 -2.2 -16.5 hypothetical protein compare
GFF4892 -2.2 -13.9 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) compare
GFF3684 -2.0 -3.6 NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
GFF222 -2.0 -3.5 ATP-dependent RNA helicase Bcep18194_A5658 compare
GFF689 -2.0 -8.5 Cytochrome c oxidase polypeptide I (EC 1.9.3.1) compare
GFF5767 -2.0 -4.5 Lipid IVA 3-deoxy-D-manno-octulosonic acid transferase (EC 2.4.99.12) [often with (EC 2.4.99.13) also] compare
GFF2923 -2.0 -6.8 Cytochrome c-type biogenesis protein ResA compare
GFF1764 -1.9 -4.4 Creatinine amidohydrolase (EC 3.5.2.10) compare
GFF4893 -1.9 -2.8 Nitrogen regulation protein NR(I) compare
GFF4600 -1.9 -6.8 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF3355 -1.8 -3.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF5173 -1.8 -2.3 MotA/TolQ/ExbB proton channel family protein compare
GFF1860 -1.7 -11.1 Radical SAM compare
GFF691 -1.7 -4.3 Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1 compare
GFF2614 -1.7 -2.3 HPr kinase/phosphorylase (EC 2.7.1.-) (EC 2.7.4.-) compare
GFF4513 -1.7 -9.7 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
GFF4889 -1.6 -3.5 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF4535 -1.6 -3.5 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor compare
GFF3888 -1.6 -2.0 Biopolymer transport protein ExbD/TolR compare
GFF688 -1.6 -7.6 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF698 -1.6 -4.1 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
GFF4523 -1.6 -6.2 FIG000859: hypothetical protein YebC compare
GFF550 -1.6 -3.7 C4-type zinc finger protein, DksA/TraR family compare
GFF697 -1.6 -6.7 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
GFF2804 -1.6 -9.1 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) compare
GFF5461 -1.6 -1.5 Tyrosine recombinase XerD compare
GFF3695 -1.5 -2.1 FIG003089: Probable transmembrane protein compare
GFF4534 -1.5 -5.2 tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins compare
GFF693 -1.5 -2.2 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) compare
GFF2367 -1.4 -5.4 hypothetical protein compare
GFF676 -1.4 -6.7 Putative periplasmic cytochrome type-C oxidoreductase signal peptide protein (EC 1.-.-.-) compare
GFF4962 -1.4 -4.3 Excinuclease ABC subunit B compare
GFF1666 -1.4 -3.0 Holliday junction DNA helicase RuvA compare
GFF3716 -1.4 -1.9 Tricarboxylate transport protein TctC compare
GFF5742 -1.4 -1.8 Probable transmembrane protein compare
GFF1863 -1.4 -9.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF4521 -1.3 -9.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF1186 -1.3 -2.0 General secretion pathway protein N compare
GFF1257 -1.3 -2.4 FAD/FMN-containing dehydrogenases compare
GFF4243 -1.3 -4.4 ATP-dependent DNA helicase pcrA (EC 3.6.1.-) compare
GFF770 -1.3 -9.6 Fatty acid desaturase (EC 1.14.19.1); Delta-9 fatty acid desaturase (EC 1.14.19.1) compare
GFF5559 -1.3 -3.6 Topoisomerase IV subunit A (EC 5.99.1.-) compare
GFF781 -1.3 -2.1 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF1787 -1.2 -6.5 Nitrogen regulation protein NtrY (EC 2.7.3.-) compare
GFF775 -1.2 -1.9 Cell division protein FtsK compare
GFF2936 -1.2 -3.4 Proposed lipoate regulatory protein YbeD compare
GFF3361 -1.2 -7.5 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF4890 -1.2 -6.6 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF1225 -1.2 -1.2 FIG136845: Rhodanese-related sulfurtransferase compare
GFF5110 -1.2 -5.6 Phytoene synthase (EC 2.5.1.32) compare
GFF2567 -1.2 -3.4 Preprotein translocase subunit YajC (TC 3.A.5.1.1) compare
GFF2500 -1.2 -6.1 RecA protein compare
GFF1916 -1.1 -9.9 Probable transmembrane protein compare
GFF695 -1.1 -4.7 Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion compare
GFF1550 -1.0 -1.4 hypothetical protein compare
GFF5561 -1.0 -3.0 Topoisomerase IV subunit B (EC 5.99.1.-) compare
GFF1267 -1.0 -5.8 Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2 compare
GFF5143 -1.0 -2.7 TPR repeat precursor compare
GFF5538 -1.0 -1.4 hypothetical protein compare
GFF2038 -1.0 -2.4 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) compare
GFF5183 -1.0 -1.9 glutamyl-Q-tRNA synthetase compare
GFF5577 -1.0 -3.3 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
GFF4788 -1.0 -7.8 Methylmalonyl-CoA mutase (EC 5.4.99.2) compare
GFF4501 -1.0 -4.0 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
GFF1351 -1.0 -6.8 Cytochrome c4 compare
GFF2018 -1.0 -4.9 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF2462 -1.0 -1.3 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
GFF2718 -1.0 -4.2 21 kDa hemolysin precursor compare
GFF3933 -1.0 -3.6 membrane protein, putative compare
GFF3360 -0.9 -7.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF3141 -0.9 -1.9 hypothetical protein compare
GFF5340 -0.9 -1.8 Outer membrane protein A precursor compare
GFF3363 -0.9 -6.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF3405 -0.9 -1.1 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF3500 -0.9 -1.8 Mll5900 protein compare
GFF3438 -0.9 -4.6 Poly(A) polymerase (EC 2.7.7.19) compare
GFF1575 -0.9 -2.8 Nudix-related transcriptional regulator NrtR compare
GFF1972 -0.9 -4.3 Transcriptional regulator compare
GFF5790 -0.9 -1.5 tRNA-Leu-TAG compare
GFF4293 -0.9 -5.4 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF4292 -0.9 -3.8 Oxidoreductase probably involved in sulfite reduction compare
GFF4861 -0.9 -2.9 Mlr7403 protein compare
GFF520 -0.9 -4.1 Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4) compare
GFF5734 -0.8 -2.3 Ribosome small subunit-stimulated GTPase EngC compare
GFF3518 -0.8 -1.4 Putative outer membrane lipoprotein compare
GFF4089 -0.8 -1.6 Flagellar biosynthesis protein FliR compare
GFF2615 -0.8 -2.9 Ferric uptake regulation protein FUR compare
GFF3185 -0.8 -2.2 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
GFF2469 -0.8 -6.8 NADP-dependent malic enzyme (EC 1.1.1.40) compare
GFF4384 -0.8 -1.7 hypothetical protein compare
GFF5630 -0.8 -1.0 Transcriptional regulator, AraC family compare
GFF2897 -0.8 -3.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF5387 -0.8 -1.1 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF3622 -0.8 -2.2 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
GFF4594 -0.8 -2.8 Phenylacetic acid degradation protein paaI compare
GFF2954 -0.8 -5.9 Cytochrome c5 compare
GFF2485 -0.8 -3.2 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
GFF3780 -0.8 -2.9 4-hydroxybenzoyl-CoA thioesterase family active site compare
GFF2446 -0.8 -2.4 RNA-binding protein compare
GFF5228 -0.8 -5.9 Transcriptional regulator, TetR family compare
GFF3880 -0.8 -5.0 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
GFF1339 -0.8 -3.0 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
GFF1788 -0.8 -4.8 Probable proline rich signal peptide protein compare
GFF2815 -0.8 -2.9 Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
GFF1912 -0.8 -5.1 integral membrane protein compare
GFF779 -0.8 -3.3 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
GFF41 -0.7 -2.1 hypothetical protein compare
GFF3977 -0.7 -1.6 Cobyrinic acid A,C-diamide synthase compare
GFF696 -0.7 -4.0 Probable transmembrane protein compare
GFF780 -0.7 -2.0 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF4346 -0.7 -5.2 GTP-binding protein TypA/BipA compare
GFF4785 -0.7 -5.4 Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) compare
GFF5427 -0.7 -2.4 hypothetical protein compare
GFF2391 -0.7 -0.9 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
GFF5706 -0.7 -1.2 putative exported protein compare
GFF1171 -0.7 -1.8 hypothetical protein compare
GFF5268 -0.7 -3.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
GFF1204 -0.7 -3.9 Regulatory protein of benzoate catabolism compare
GFF1914 -0.7 -5.1 FIG00931613: hypothetical protein compare
GFF2123 -0.7 -2.1 Translation initiation factor 1 compare
GFF4661 -0.7 -1.7 FIG004453: protein YceG like compare
GFF5089 -0.7 -2.1 Nitrilotriacetate monooxygenase component A (EC 1.14.13.-) compare
GFF4001 -0.7 -1.7 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
GFF1153 -0.7 -0.9 Transcriptional regulator, LysR family compare
GFF4043 -0.7 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF3776 -0.7 -2.5 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF445 -0.6 -1.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF3308 -0.6 -1.9 N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87) compare
GFF1494 -0.6 -1.7 Transcriptional regulator, LysR family compare
GFF4928 -0.6 -2.5 putative exported protein compare
GFF4297 -0.6 -1.3 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
GFF997 -0.6 -1.9 MaoC-related acyl dehydratase compare
GFF1331 -0.6 -4.8 3-dehydroquinate synthase (EC 4.2.3.4) compare
GFF2507 -0.6 -2.5 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
GFF3587 -0.6 -2.0 Formiminoglutamase (EC 3.5.3.8) compare
GFF4944 -0.6 -4.3 transcriptional regulator, TetR family compare
GFF716 -0.6 -4.4 Glyoxalase family protein compare


Specific Phenotypes

None in this experiment

For Hydrogenophaga sp. GW460-11-11-14-LB1 in carbon source experiments

For carbon source Ying_AminoAcid20 across organisms