Experiment set1S295 for Bacteroides ovatus ATCC 8483

Xyloglucan from tamarind 2.5 mg/mL carbon source

Group: carbon source
Media: Varel_Bryant_medium + Xyloglucan from tamarind (2.5 mg/mL)
Culturing: Bovatus_ATCC8483_ML6, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya on 10/30/24
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)

Specific Phenotypes

For 7 genes in this experiment

For carbon source Xyloglucan from tamarind in Bacteroides ovatus ATCC 8483

For carbon source Xyloglucan from tamarind across organisms

SEED Subsystems

Subsystem	#Specific
Iron acquisition in Vibrio	1
Ton and Tol transport systems	1
Xylose utilization	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Ascorbate and aldarate metabolism
• Ubiquinone and menaquinone biosynthesis
• Starch and sucrose metabolism
• Nucleotide sugars metabolism
• Glycosaminoglycan degradation

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
cellulose degradation II (fungi)	3	2	1