Experiment set1S289 for Hydrogenophaga sp. GW460-11-11-14-LB1

Compare to:

Ying_all64 rep A; time point 1

200 most detrimental genes:

  gene name fitness t score description  
GFF5696 +1.4 2.7 PROBABLE TRANSMEMBRANE PROTEIN compare
GFF4424 +1.2 1.1 Regulatory protein, LuxR:Tetratricopeptide TPR_4 compare
GFF2877 +1.1 2.9 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
GFF3385 +1.1 2.4 hypothetical protein PA3071 compare
GFF2813 +1.1 2.2 FIG00761799: membrane protein compare
GFF176 +0.9 2.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF2139 +0.9 2.1 transcriptional regulator, LysR family compare
GFF1453 +0.9 2.0 Flagellar assembly protein FliH compare
GFF1494 +0.8 2.0 Transcriptional regulator, LysR family compare
GFF1194 +0.8 1.3 Formate dehydrogenase subunit or accessory protein compare
GFF4435 +0.8 1.3 Conjugative transfer protein TrbB compare
GFF57 +0.8 1.1 hypothetical protein compare
GFF1501 +0.8 1.9 Transcriptional regulator, LacI family compare
GFF2763 +0.8 2.6 Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) compare
GFF5467 +0.8 1.3 hypothetical protein compare
GFF2563 +0.8 1.0 hypothetical protein compare
GFF4074 +0.8 1.3 Flagellar basal-body rod modification protein FlgD compare
GFF5003 +0.7 1.7 Adenylate cyclase (EC 4.6.1.1) compare
GFF5308 +0.7 1.4 hypothetical protein compare
GFF2410 +0.7 1.7 Two-component system response regulator QseB compare
GFF5808 +0.7 2.6 hypothetical cytochrome oxidase associated membrane protein compare
GFF3651 +0.7 1.3 Serine acetyltransferase (EC 2.3.1.30) compare
GFF1057 +0.7 1.6 hypothetical protein compare
GFF4610 +0.7 1.8 hypothetical protein compare
GFF4999 +0.7 2.3 Stress responsive alpha-beta barrel domain protein Dabb compare
GFF55 +0.7 1.5 EpsI protein compare
GFF3280 +0.7 2.2 hypothetical protein compare
GFF471 +0.7 1.4 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases compare
GFF1186 +0.7 1.4 General secretion pathway protein N compare
GFF2963 +0.7 1.8 Dimethylmenaquinone methyltransferase family protein compare
GFF3268 +0.7 1.4 Urease gamma subunit (EC 3.5.1.5) compare
GFF612 +0.7 1.7 Putative sensor-like histidine kinase YfhK compare
GFF2209 +0.7 1.6 Uptake hydrogenase small subunit precursor (EC 1.12.99.6) compare
GFF4784 +0.6 1.8 Phospholipid N-methyltransferase compare
GFF4720 +0.6 1.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF3401 +0.6 2.2 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
GFF2595 +0.6 2.4 hypothetical protein compare
GFF175 +0.6 1.7 TRAP-type C4-dicarboxylate transport system, periplasmic component compare
GFF1461 +0.6 1.4 Flagellar biosynthesis protein FliP compare
GFF926 +0.6 0.9 MaoC family protein compare
GFF516 +0.6 2.3 Acyl-CoA hydrolase (EC 3.1.2.20) compare
GFF757 +0.6 3.7 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase compare
GFF5833 +0.6 1.5 Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) compare
GFF5639 +0.6 1.1 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
GFF2231 +0.6 2.0 hypothetical protein compare
GFF984 +0.6 1.2 hypothetical protein compare
GFF5312 +0.6 1.8 hypothetical protein compare
GFF3778 +0.6 1.8 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
GFF5076 +0.6 0.9 Alkanesulfonates transport system permease protein compare
GFF4686 +0.6 1.6 Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4) compare
GFF4667 +0.6 4.9 Tricarboxylate transport protein TctB compare
GFF2927 +0.6 1.7 hypothetical protein compare
GFF5034 +0.6 1.3 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
GFF1602 +0.6 1.5 Arsenic efflux pump protein compare
GFF3630 +0.6 2.2 ortholog of Bordetella pertussis (BX470248) BP1188 compare
GFF1874 +0.6 1.7 Mannose-6-phosphate isomerase compare
GFF4057 +0.6 1.4 Flagellar assembly protein FliH compare
GFF4486 +0.6 2.6 Benzoate transport, ATP binding protein compare
GFF2635 +0.6 1.3 Transcriptional regulator, HxlR family compare
GFF3140 +0.6 2.4 IncF plasmid conjugative transfer pilus assembly protein TraW compare
GFF5131 +0.6 2.6 Tricarboxylate transport sensor protein TctE compare
GFF4416 +0.6 2.1 Enoyl-CoA hydratase (EC 4.2.1.17) compare
GFF3654 +0.6 0.9 FIG138315: Putative alpha helix protein compare
GFF5000 +0.6 1.6 Catechol 1,2-dioxygenase (EC 1.13.11.1) compare
GFF4952 +0.5 1.8 UPF0076 protein PYRAB12510 compare
GFF1542 +0.5 0.7 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF4815 +0.5 1.4 FOG: EAL domain compare
GFF339 +0.5 2.3 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF3154 +0.5 1.6 hypothetical protein compare
GFF4417 +0.5 0.9 Electron transfer flavoprotein, beta subunit compare
GFF1905 +0.5 0.9 membrane protein, putative compare
GFF4656 +0.5 2.1 Alcohol dehydrogenase (EC 1.1.1.1) compare
GFF1622 +0.5 0.8 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
GFF3615 +0.5 2.0 hypothetical protein compare
GFF3010 +0.5 1.3 3-oxoacyl-[ACP] synthase compare
GFF5075 +0.5 0.7 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
GFF4639 +0.5 2.4 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
GFF1041 +0.5 1.5 Aerotaxis sensor receptor protein compare
GFF5455 +0.5 1.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF3749 +0.5 0.6 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
GFF4603 +0.5 1.9 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
GFF2868 +0.5 1.3 Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) compare
GFF5631 +0.5 1.8 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
GFF1985 +0.5 1.8 hypothetical protein compare
GFF786 +0.5 1.0 probable polyketide cyclase compare
GFF600 +0.5 0.7 Phosphohydrolase (MutT/nudix family protein) compare
GFF1611 +0.5 4.1 Glycine cleavage system transcriptional activator compare
GFF3460 +0.5 1.2 Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) compare
GFF4760 +0.5 2.5 hypothetical protein compare
GFF432 +0.5 2.0 Tricarboxylate transport protein TctC compare
GFF149 +0.5 2.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF359 +0.5 0.7 hypothetical protein compare
GFF4440 +0.5 1.1 Conjugative transfer protein TrbL compare
GFF2999 +0.5 0.9 Acyl carrier protein (ACP1) compare
GFF3602 +0.5 1.3 hypothetical protein compare
GFF1817 +0.5 2.0 2-hydroxychromene-2-carboxylate isomerase compare
GFF5358 +0.5 2.0 Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16) compare
GFF4465 +0.5 2.4 putative membrane protein compare
GFF2878 +0.5 1.5 Two-component response regulator compare
GFF4431 +0.5 1.8 Transcriptional regulator, LysR family compare
GFF539 +0.5 1.3 Transcriptional regulator, GntR family compare
GFF3886 +0.5 2.2 Protein GlcG compare
GFF2864 +0.5 1.7 Creatinine amidohydrolase (EC 3.5.2.10) compare
GFF5374 +0.5 1.5 Carbon monoxide dehydrogenase medium chain (EC 1.2.99.2) compare
GFF129 +0.5 0.9 Indolepyruvate oxidoreductase subunit IorB II (EC 1.2.7.8) compare
GFF2628 +0.5 0.7 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF2067 +0.5 1.1 hypothetical protein compare
GFF3959 +0.5 3.2 FIG00986182: hypothetical protein compare
GFF2316 +0.5 1.3 hypothetical protein compare
GFF5121 +0.5 1.9 Benzoate transport, ATPase component compare
GFF3072 +0.5 1.2 hypothetical protein compare
GFF2686 +0.5 1.5 putative exported protein compare
GFF146 +0.5 1.1 Flagellar motor protein compare
GFF4657 +0.5 2.4 Esterase/lipase compare
GFF5744 +0.5 2.4 FIG00931343: hypothetical protein compare
GFF3911 +0.5 1.0 hypothetical protein compare
GFF2558 +0.5 1.6 hypothetical protein compare
GFF945 +0.5 1.2 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) compare
GFF3171 +0.5 1.9 hypothetical protein compare
GFF3869 +0.5 1.5 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
GFF5658 +0.5 1.0 Methylsuccinyl-CoA dehydrogenase, predicted by (Erb et al, 2007) compare
GFF2198 +0.5 2.0 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
GFF3288 +0.5 1.2 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
GFF3027 +0.5 1.5 Tricarboxylate transport transcriptional regulator TctD compare
GFF2185 +0.5 1.5 hypothetical protein compare
GFF1924 +0.5 0.9 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein compare
GFF4399 +0.5 0.8 Chromosome (plasmid) partitioning protein ParA compare
GFF5671 +0.5 1.5 putative dioxygenase hydroxylase component compare
GFF5468 +0.5 1.3 MCE-FAMILY PROTEIN MCE4B compare
GFF5271 +0.5 1.7 hypothetical protein compare
GFF4483 +0.5 2.0 Putative threonine efflux protein compare
GFF4896 +0.5 1.3 Probable transmembrane protein compare
GFF4490 +0.4 3.0 Benzoate transport, extracellular ligand-binding receptor compare
GFF342 +0.4 1.5 transcriptional regulator, Crp/Fnr family compare
GFF3456 +0.4 1.2 Probable lipoprotein compare
GFF468 +0.4 1.1 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
GFF5128 +0.4 1.1 Tricarboxylate transport protein TctB compare
GFF5681 +0.4 1.8 putative transport protein compare
GFF5710 +0.4 1.8 hypothetical protein compare
GFF343 +0.4 1.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF4627 +0.4 1.1 hypothetical protein compare
GFF1944 +0.4 1.6 Cyanate hydratase (EC 4.2.1.104) compare
GFF8 +0.4 1.7 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
GFF5477 +0.4 1.5 Probable ferredoxin subunit of a ring-hydroxylating dioxygenase oxidoreductase protein (EC 1.-.-.-) compare
GFF4034 +0.4 1.5 Chromosome initiation inhibitor compare
GFF3499 +0.4 1.5 hypothetical protein compare
GFF5640 +0.4 1.4 Extracellular ligand-binding receptor compare
GFF3144 +0.4 2.3 IncF plasmid conjugative transfer pilus assembly protein TraC compare
GFF3572 +0.4 1.6 protein of unknown function DUF1332 compare
GFF4601 +0.4 0.8 Phenylacetic acid degradation protein paaI compare
GFF41 +0.4 1.2 hypothetical protein compare
GFF4339 +0.4 1.7 predicted integral membrane protein compare
GFF478 +0.4 1.1 Acyclic terpenes utilization regulator AtuR, TetR family compare
GFF3178 +0.4 1.2 Death on curing protein, Doc toxin compare
GFF5450 +0.4 0.6 hypothetical protein compare
GFF4984 +0.4 1.8 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
GFF1095 +0.4 1.2 Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family compare
GFF4393 +0.4 2.2 y4eB gene in pNGR234a homolog compare
GFF537 +0.4 1.9 Metallo-beta-lactamase family protein compare
GFF3259 +0.4 1.1 hypothetical protein compare
GFF1391 +0.4 2.0 General secretion pathway protein E compare
GFF5682 +0.4 1.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
GFF507 +0.4 1.5 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
GFF5056 +0.4 1.3 FOG: Ankyrin repeat compare
GFF1531 +0.4 0.9 putative exported protein compare
GFF2389 +0.4 0.6 Hydroxymethylpyrimidine ABC transporter, transmembrane component compare
GFF3136 +0.4 1.0 hypothetical protein compare
GFF2176 +0.4 1.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF4004 +0.4 0.6 LysR family regulatory protein compare
GFF3494 +0.4 1.6 hypothetical protein compare
GFF2562 +0.4 2.5 hypothetical protein compare
GFF4437 +0.4 0.8 Conjugative transfer protein TrbD compare
GFF4302 +0.4 2.5 hypothetical protein compare
GFF5628 +0.4 0.6 Transcriptional regulator, LysR family compare
GFF3779 +0.4 1.9 Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein compare
GFF3056 +0.4 1.1 MmgE/PrpD family protein compare
GFF1053 +0.4 1.3 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
GFF4737 +0.4 1.1 hypothetical protein compare
GFF3321 +0.4 2.2 Iron-sulfur cluster-binding protein, Rieske family compare
GFF5127 +0.4 2.7 Tricarboxylate transport membrane protein TctA compare
GFF2577 +0.4 2.7 Phosphoglycerol transferase I (EC 2.7.8.20) compare
GFF1823 +0.4 2.1 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4) compare
GFF153 +0.4 1.8 Lactoylglutathione lyase (EC 4.4.1.5) compare
GFF682 +0.4 1.3 Acyl dehydratase compare
GFF653 +0.4 1.0 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
GFF1048 +0.4 1.6 NnrS protein involved in response to NO compare
GFF3738 +0.4 0.9 hypothetical protein compare
GFF83 +0.4 1.2 Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid compare
GFF495 +0.4 2.8 Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) compare
GFF1717 +0.4 1.3 UPF0225 protein YchJ compare
GFF801 +0.4 2.3 Permease of the drug/metabolite transporter (DMT) superfamily compare
GFF450 +0.4 1.4 PhnB protein compare
GFF5297 +0.4 1.0 major virion structural protein compare
GFF2657 +0.4 1.1 Na(+) H(+) antiporter subunit C compare
GFF2561 +0.4 2.8 hypothetical protein compare
GFF1102 +0.4 1.9 DNA-binding heavy metal response regulator compare
GFF2889 +0.4 1.5 Rubisco activation protein CbbQ compare
GFF3479 +0.4 1.6 Type IV secretory pathway, VirD2 components (relaxase) compare
GFF5323 +0.4 1.0 hypothetical protein compare
GFF3628 +0.4 0.7 Ornithine cyclodeaminase (EC 4.3.1.12) compare


Specific Phenotypes

None in this experiment

For Hydrogenophaga sp. GW460-11-11-14-LB1 in carbon source experiments

For carbon source Ying_all64 across organisms