Experiment set1S289 for Escherichia fergusonii Becca

Compare to:

BHIS no phage control

200 most detrimental genes:

  gene name fitness t score description  
EFB2_00563 +2.3 17.9 DNA-binding protein Fis compare
EFB2_01856 +1.4 1.7 hypothetical protein compare
EFB2_01818 +1.4 1.7 UDP-Glc:alpha-D-GlcNAc-diphosphoundecaprenol beta-1,3-glucosyltransferase WfgD compare
EFB2_01666 +1.3 2.9 hypothetical protein compare
EFB2_00399 +1.1 1.4 hypothetical protein compare
EFB2_03415 +1.1 2.3 HTH-type transcriptional repressor GlcR compare
EFB2_03890 +1.1 1.2 Glutamate-1-semialdehyde 2,1-aminomutase compare
EFB2_03996 +1.0 2.3 hypothetical protein compare
EFB2_01751 +1.0 2.3 Transcriptional repressor RcnR compare
EFB2_04413 +1.0 1.6 Anti-FlhC(2)FlhD(4) factor YdiV compare
EFB2_03042 +1.0 2.2 Galactarate dehydratase (L-threo-forming) compare
EFB2_02970 +1.0 3.0 IS4 family transposase IS4 compare
EFB2_02812 +0.9 1.6 Crossover junction endodeoxyribonuclease RusA compare
EFB2_02820 +0.9 2.8 hypothetical protein compare
EFB2_04623 +0.9 0.4 DNA-directed RNA polymerase subunit beta' compare
EFB2_04238 +0.8 1.2 putative fimbrial chaperone YadV compare
EFB2_01184 +0.8 2.4 hypothetical protein compare
EFB2_02335 +0.8 1.9 putative protein YnhF compare
EFB2_03771 +0.8 2.3 hypothetical protein compare
EFB2_04229 +0.8 1.0 hypothetical protein compare
EFB2_04224 +0.8 1.2 Hemolysin secretion protein D, chromosomal compare
EFB2_02570 +0.7 1.5 Inner membrane protein YnbA compare
EFB2_00635 +0.7 3.0 hypothetical protein compare
EFB2_04781 +0.7 1.2 Ubiquinone biosynthesis accessory factor UbiJ compare
EFB2_01182 +0.7 0.6 hypothetical protein compare
EFB2_01235 +0.7 1.9 tRNA-Arg compare
EFB2_02409 +0.7 1.4 hypothetical protein compare
EFB2_00706 +0.7 0.8 hypothetical protein compare
EFB2_03253 +0.7 1.8 hypothetical protein compare
EFB2_04500 +0.7 2.0 hypothetical protein compare
EFB2_03050 +0.7 2.5 Ribosomal RNA small subunit methyltransferase I compare
EFB2_01774 +0.7 2.2 hypothetical protein compare
EFB2_03237 +0.7 2.3 hypothetical protein compare
EFB2_03803 +0.7 0.7 hypothetical protein compare
EFB2_01079 +0.7 2.3 hypothetical protein compare
EFB2_03089 +0.6 1.0 Cold shock-like protein CspG compare
EFB2_02993 +0.6 0.9 hypothetical protein compare
EFB2_02108 +0.6 0.7 Double-strand break reduction protein compare
EFB2_02349 +0.6 1.3 hypothetical protein compare
EFB2_01948 +0.6 0.7 tRNA-Asn compare
EFB2_01480 +0.6 1.5 tRNA-Ala compare
EFB2_02768 +0.6 1.0 putative two-component-system connector protein AriR compare
EFB2_02296 +0.6 2.7 HTH-type transcriptional activator RhaS compare
EFB2_01570 +0.6 1.0 hypothetical protein compare
EFB2_00971 +0.6 1.7 Fructose-1,6-bisphosphatase 2 class 2 compare
EFB2_02531 +0.6 2.7 hypothetical protein compare
EFB2_01968 +0.6 1.1 hypothetical protein compare
EFB2_02095 +0.5 1.2 hypothetical protein compare
EFB2_01852 +0.5 1.6 Cytoskeleton bundling-enhancing antitoxin CbeA compare
EFB2_03592 +0.5 1.3 hypothetical protein compare
EFB2_02763 +0.5 1.8 hypothetical protein compare
EFB2_03043 +0.5 1.8 Galactarate dehydratase (L-threo-forming) compare
EFB2_02425 +0.5 1.7 PTS system N,N'-diacetylchitobiose-specific EIIC component compare
EFB2_02824 +0.5 1.7 hypothetical protein compare
EFB2_02498 +0.5 1.6 Type 1 fimbrin D-mannose specific adhesin compare
EFB2_02248 +0.5 2.8 N-succinylarginine dihydrolase compare
EFB2_02338 +0.5 2.5 Murein DD-endopeptidase MepH compare
EFB2_01870 +0.5 2.3 hypothetical protein compare
EFB2_01891 +0.5 1.2 hypothetical protein compare
EFB2_03504 +0.5 0.6 Ferric enterobactin transport ATP-binding protein FepC compare
EFB2_02667 +0.5 1.7 Protein YciF compare
EFB2_02051 +0.5 2.1 Flagellar transcriptional regulator FlhD compare
EFB2_04471 +0.5 1.6 hypothetical protein compare
EFB2_02286 +0.5 1.6 putative protein YdiE compare
EFB2_02995 +0.5 0.6 hypothetical protein compare
EFB2_01821 +0.5 1.6 UDP-glucose 4-epimerase compare
EFB2_01975 +0.5 1.5 hypothetical protein compare
EFB2_02213 +0.5 2.9 Glyoxal reductase compare
EFB2_04727 +0.5 1.3 hypothetical protein compare
EFB2_00312 +0.5 0.6 hypothetical protein compare
EFB2_03252 +0.5 1.4 hypothetical protein compare
EFB2_02194 +0.5 2.1 Outer membrane protein Slp compare
EFB2_01169 +0.5 4.3 RNA polymerase sigma factor RpoS compare
EFB2_02090 +0.4 1.1 hypothetical protein compare
EFB2_03001 +0.4 1.0 Microcin H47 immunity protein MchI compare
EFB2_04440 +0.4 0.7 hypothetical protein compare
EFB2_01307 +0.4 0.7 IS110 family transposase IS621 compare
EFB2_01803 +0.4 1.7 GDP-mannose mannosyl hydrolase compare
EFB2_01487 +0.4 1.6 PTS system fructose-like EIIB component 1 compare
EFB2_02116 +0.4 1.4 hypothetical protein compare
EFB2_01431 +0.4 2.3 Ethanolamine utilization protein EutM compare
EFB2_01598 +0.4 1.5 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
EFB2_02043 +0.4 1.0 hypothetical protein compare
EFB2_00185 +0.4 1.6 hypothetical protein compare
EFB2_02871 +0.4 1.5 hypothetical protein compare
EFB2_01669 +0.4 0.9 hypothetical protein compare
EFB2_00473 +0.4 1.9 hypothetical protein compare
EFB2_03567 +0.4 1.3 Inner membrane protein YbbJ compare
EFB2_04608 +0.4 1.4 hypothetical protein compare
EFB2_01769 +0.4 1.5 hypothetical protein compare
EFB2_04600 +0.4 1.1 5S ribosomal RNA compare
EFB2_00070 +0.4 1.5 HTH-type transcriptional regulator BetI compare
EFB2_02291 +0.4 1.3 Ferredoxin-like protein FixX compare
EFB2_02250 +0.4 1.3 Periplasmic chaperone Spy compare
EFB2_02238 +0.4 2.8 Inner membrane ABC transporter permease protein YnjC compare
EFB2_02000 +0.4 1.4 Flagellar motor switch protein FliN compare
EFB2_01904 +0.4 0.8 Transcriptional regulatory protein RcsA compare
EFB2_02765 +0.4 1.0 Inner membrane protein YmgF compare
EFB2_02530 +0.4 1.0 hypothetical protein compare
EFB2_02605 +0.4 2.2 hypothetical protein compare
EFB2_04185 +0.4 1.0 hypothetical protein compare
EFB2_02775 +0.4 0.8 hypothetical protein compare
EFB2_00996 +0.4 0.7 2-octaprenylphenol hydroxylase compare
EFB2_02948 +0.4 1.4 hypothetical protein compare
EFB2_02790 +0.4 1.9 hypothetical protein compare
EFB2_04189 +0.4 1.1 hypothetical protein compare
EFB2_01965 +0.4 1.2 hypothetical protein compare
EFB2_03000 +0.4 1.7 hypothetical protein compare
EFB2_02688 +0.4 2.2 Thymidine kinase compare
EFB2_02235 +0.4 1.1 Inner membrane protein YnjF compare
EFB2_01850 +0.4 1.8 Protein YeeW compare
EFB2_01068 +0.4 0.9 Transcription antiterminator LicT compare
EFB2_03003 +0.4 1.6 hypothetical protein compare
EFB2_01525 +0.4 1.3 putative fimbrial-like protein YfcP compare
EFB2_04430 +0.4 0.5 IS256 family transposase ISEc39 compare
EFB2_01185 +0.4 1.1 hypothetical protein compare
EFB2_04719 +0.4 1.8 hypothetical protein compare
EFB2_01800 +0.3 1.0 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase compare
EFB2_02399 +0.3 1.3 ATP-dependent dethiobiotin synthetase BioD 1 compare
EFB2_00138 +0.3 1.4 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
EFB2_03248 +0.3 1.6 hypothetical protein compare
EFB2_02385 +0.3 1.7 Inner membrane protein YdgC compare
EFB2_01713 +0.3 2.1 Cytidine deaminase compare
EFB2_04038 +0.3 1.8 hypothetical protein compare
EFB2_02300 +0.3 1.5 Quinate/shikimate dehydrogenase compare
EFB2_02596 +0.3 1.7 Low conductance mechanosensitive channel YnaI compare
EFB2_02793 +0.3 0.8 hypothetical protein compare
EFB2_02114 +0.3 1.3 hypothetical protein compare
EFB2_02526 +0.3 1.3 Respiratory nitrate reductase 2 gamma chain compare
EFB2_02102 +0.3 1.2 DNA polymerase III subunit theta compare
EFB2_01886 +0.3 1.4 Ribokinase compare
EFB2_04050 +0.3 1.6 Inosine/xanthosine triphosphatase compare
EFB2_02541 +0.3 1.4 Inner membrane ABC transporter permease protein YdcV compare
EFB2_01024 +0.3 1.6 Molybdenum cofactor cytidylyltransferase compare
EFB2_02350 +0.3 1.0 Transcriptional regulator SlyA compare
EFB2_03770 +0.3 0.8 hypothetical protein compare
EFB2_02826 +0.3 0.9 hypothetical protein compare
EFB2_02395 +0.3 0.8 Acid shock protein compare
EFB2_02391 +0.3 2.0 AI-2 transport protein TqsA compare
EFB2_00588 +0.3 1.6 Protein AaeX compare
EFB2_02835 +0.3 1.4 hypothetical protein compare
EFB2_04351 +0.3 1.4 hypothetical protein compare
EFB2_03966 +0.3 0.9 Transcriptional regulator MraZ compare
EFB2_00395 +0.3 1.6 putative major fimbrial subunit LpfA compare
EFB2_01350 +0.3 1.8 Ribose import permease protein RbsC compare
EFB2_04894 +0.3 1.4 ATP synthase protein I compare
EFB2_01994 +0.3 1.3 Protein DsrB compare
EFB2_02325 +0.3 0.6 Putative monooxygenase YdhR compare
EFB2_01744 +0.3 1.5 hypothetical protein compare
EFB2_02837 +0.3 0.8 hypothetical protein compare
EFB2_00161 +0.3 1.2 hypothetical protein compare
EFB2_02074 +0.3 1.9 hypothetical protein compare
EFB2_02657 +0.3 2.1 Corrinoid adenosyltransferase compare
EFB2_02921 +0.3 2.2 Staphyloferrin B transporter compare
EFB2_02708 +0.3 1.4 Glutathione-specific gamma-glutamylcyclotransferase compare
EFB2_04456 +0.3 1.2 putative protein YjdJ compare
EFB2_02804 +0.3 1.3 hypothetical protein compare
EFB2_02536 +0.3 1.3 L-amino acid N-acyltransferase MnaT compare
EFB2_00804 +0.3 1.6 Biopolymer transport protein ExbD compare
EFB2_02711 +0.3 0.6 Small toxic polypeptide LdrA compare
EFB2_02214 +0.3 1.7 Putative glucose-6-phosphate 1-epimerase compare
EFB2_02713 +0.3 1.7 hypothetical protein compare
EFB2_03767 +0.3 0.9 hypothetical protein compare
EFB2_04230 +0.3 1.7 hypothetical protein compare
EFB2_03213 +0.3 1.3 Inner membrane protein YbjM compare
EFB2_03245 +0.3 1.1 hypothetical protein compare
EFB2_02322 +0.3 1.6 Putative cytochrome YdhU compare
EFB2_02337 +0.3 1.6 Superoxide dismutase [Fe] compare
EFB2_04151 +0.3 1.9 Transcriptional regulator KdgR compare
EFB2_02607 +0.3 1.4 Catabolite control protein A compare
EFB2_02406 +0.3 1.6 putative protein YnfD compare
EFB2_01264 +0.3 1.6 hypothetical protein compare
EFB2_02098 +0.3 1.4 Inner membrane protein YebE compare
EFB2_01838 +0.3 0.7 Antitoxin YefM compare
EFB2_02264 +0.3 1.5 Inner membrane protein YdjM compare
EFB2_03131 +0.3 1.3 Aliphatic sulfonates import ATP-binding protein SsuB compare
EFB2_00893 +0.3 1.6 Oligogalacturonate lyase compare
EFB2_01585 +0.3 1.6 hypothetical protein compare
EFB2_01085 +0.3 1.3 hypothetical protein compare
EFB2_03076 +0.3 1.6 NAD(P)H dehydrogenase (quinone) compare
EFB2_02817 +0.3 1.3 hypothetical protein compare
EFB2_00262 +0.3 0.5 tRNA-Pro compare
EFB2_01021 +0.3 1.6 hypothetical protein compare
EFB2_03817 +0.3 1.6 hypothetical protein compare
EFB2_00857 +0.3 0.6 Glycerol-3-phosphate cytidylyltransferase compare
EFB2_04090 +0.3 1.6 L-galactonate-5-dehydrogenase compare
EFB2_01016 +0.3 1.3 Hydrogenase-4 component A compare
EFB2_00257 +0.3 1.9 Peptidyl-lysine N-acetyltransferase YiaC compare
EFB2_03447 +0.3 1.2 Glutamine transport ATP-binding protein GlnQ compare
EFB2_00675 +0.3 0.9 hypothetical protein compare
EFB2_03616 +0.3 1.9 Peptidyl-prolyl cis-trans isomerase D compare
EFB2_00564 +0.3 1.6 tRNA-dihydrouridine synthase B compare
EFB2_00900 +0.3 0.9 hypothetical protein compare
EFB2_02065 +0.3 0.9 Flagellar protein FlhE compare
EFB2_04233 +0.3 1.7 HTH-type transcriptional regulator BetI compare
EFB2_04359 +0.3 1.6 hypothetical protein compare
EFB2_02245 +0.3 2.0 Succinylornithine transaminase compare
EFB2_03403 +0.3 1.1 hypothetical protein compare
EFB2_03005 +0.3 1.5 IS3 family transposase ISEc16 compare
EFB2_02588 +0.3 1.6 putative DNA endonuclease SmrA compare


Specific Phenotypes

For 1 genes in this experiment