Experiment set1S28 for Pseudomonas sp. DMC3

Compare to:

Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
GFF5246 -5.9 -4.0 Assimilatory nitrite reductase [NAD(P)H] small subunit compare
GFF4052 -5.6 -3.9 Ketol-acid reductoisomerase (NADP(+)) compare
GFF1604 -5.5 -7.5 putative branched-chain-amino-acid aminotransferase compare
GFF3103 -5.5 -5.3 Glutamate synthase [NADPH] small chain compare
GFF4080 -5.4 -3.7 Sensory histidine kinase/phosphatase NtrB compare
GFF246 -5.2 -5.1 Dihydroxy-acid dehydratase compare
GFF793 -5.1 -9.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
GFF3693 -5.0 -7.6 hypothetical protein compare
GFF798 -5.0 -4.8 Amidophosphoribosyltransferase compare
GFF20 -5.0 -10.0 Anthranilate synthase component 1 compare
GFF786 -4.9 -3.3 3-isopropylmalate dehydratase small subunit 1 compare
GFF4099 -4.8 -8.1 Histidine biosynthesis bifunctional protein HisB compare
GFF5 -4.7 -5.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
GFF788 -4.7 -6.5 3-isopropylmalate dehydrogenase compare
GFF4081 -4.7 -7.2 DNA-binding transcriptional regulator NtrC compare
GFF785 -4.6 -5.5 3-isopropylmalate dehydratase large subunit compare
GFF3196 -4.6 -5.5 Phosphoserine phosphatase SerB2 compare
GFF799 -4.6 -7.6 O-succinylhomoserine sulfhydrylase compare
GFF18 -4.5 -4.3 Anthranilate synthase component 2 compare
GFF4960 -4.5 -5.3 putative protein compare
GFF3102 -4.4 -15.2 Glutamate synthase [NADPH] large chain compare
GFF2051 -4.4 -10.5 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare
GFF4098 -4.3 -8.3 Imidazole glycerol phosphate synthase subunit HisH compare
GFF17 -4.3 -7.1 Anthranilate phosphoribosyltransferase compare
GFF4095 -4.2 -5.0 Imidazole glycerol phosphate synthase subunit HisF compare
GFF407 -4.2 -5.0 Acetylglutamate kinase compare
GFF16 -4.2 -7.0 Indole-3-glycerol phosphate synthase compare
GFF3308 -4.2 -4.1 Bifunctional purine biosynthesis protein PurH compare
GFF5092 -4.1 -8.4 Argininosuccinate synthase compare
GFF1535 -4.1 -6.8 Siroheme synthase compare
GFF301 -4.1 -6.2 Amino-acid acetyltransferase compare
GFF213 -4.0 -7.7 Bifunctional methionine biosynthesis protein MetXA/MetW compare
GFF1824 -4.0 -3.8 Phosphocarrier protein NPr compare
GFF4962 -4.0 -8.4 Lactate utilization protein A compare
GFF506 -3.9 -13.2 Oxaloacetate decarboxylase alpha chain compare
GFF359 -3.9 -6.0 Argininosuccinate lyase compare
GFF677 -3.9 -3.8 Tryptophan synthase alpha chain compare
GFF2677 -3.9 -5.2 Phosphoadenosine phosphosulfate reductase compare
GFF2539 -3.9 -5.9 Phosphoribosylformylglycinamidine cyclo-ligase compare
GFF1842 -3.8 -11.5 Histidinol dehydrogenase compare
GFF507 -3.8 -11.4 2-oxoglutarate carboxylase small subunit compare
GFF3224 -3.8 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
GFF5250 -3.8 -8.0 putative transcriptional regulatory protein pdtaR compare
GFF1841 -3.7 -7.1 ATP phosphoribosyltransferase compare
GFF676 -3.7 -5.1 Tryptophan synthase beta chain compare
GFF5249 -3.7 -7.8 Nitrate transporter compare
GFF5102 -3.7 -15.4 Ornithine carbamoyltransferase 1, anabolic compare
GFF171 -3.6 -4.3 5,10-methylenetetrahydrofolate reductase compare
GFF3307 -3.6 -2.5 Phosphoribosylamine--glycine ligase compare
GFF508 -3.6 -11.4 HTH-type transcriptional activator CmpR compare
GFF5245 -3.6 -12.1 Nitrate reductase compare
GFF1962 -3.5 -5.3 Phosphoribosylformylglycinamidine synthase compare
GFF4025 -3.5 -5.3 Glucose-6-phosphate isomerase compare
GFF264 -3.5 -10.0 Phosphoenolpyruvate-dependent phosphotransferase system compare
GFF4148 -3.5 -9.2 Inner membrane protein YgaZ compare
GFF4050 -3.5 -4.8 Acetolactate synthase isozyme 3 large subunit compare
GFF5247 -3.4 -14.8 Nitrite reductase [NAD(P)H] compare
GFF3072 -3.4 -5.1 Phosphoribosyl-ATP pyrophosphatase compare
GFF3692 -3.3 -10.0 Sulfite reductase [ferredoxin] compare
GFF4096 -3.3 -5.9 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino] imidazole-4-carboxamide isomerase compare
GFF212 -3.3 -9.4 Homoserine O-succinyltransferase compare
GFF4489 -3.2 -5.3 Molybdopterin-synthase adenylyltransferase compare
GFF4963 -3.2 -11.5 Glycolate permease GlcA compare
GFF2282 -3.2 -2.2 Sulfur carrier protein TusA compare
GFF274 -3.1 -6.7 D-3-phosphoglycerate dehydrogenase compare
GFF4034 -3.1 -5.9 RNA polymerase-binding transcription factor DksA compare
GFF4573 -3.1 -10.0 Molybdopterin molybdenumtransferase compare
GFF4961 -3.0 -11.3 Lactate utilization protein B compare
GFF4878 -3.0 -10.1 Arginine N-succinyltransferase subunit alpha compare
GFF4818 -2.9 -9.9 GTP pyrophosphokinase compare
GFF4147 -2.9 -5.4 hypothetical protein compare
GFF4575 -2.8 -3.0 Molybdenum cofactor guanylyltransferase compare
GFF485 -2.8 -3.3 N5-carboxyaminoimidazole ribonucleotide synthase compare
GFF4030 -2.8 -4.7 Transcriptional regulatory protein ZraR compare
GFF2289 -2.8 -3.2 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
GFF4332 -2.8 -6.7 2-isopropylmalate synthase compare
GFF1849 -2.7 -11.2 Bifunctional enzyme CysN/CysC compare
GFF4820 -2.5 -6.7 Cysteine synthase B compare
GFF4914 -2.5 -1.7 RecBCD enzyme subunit RecD compare
GFF1848 -2.5 -8.2 Sulfate adenylyltransferase subunit 2 compare
GFF1927 -2.4 -3.2 Molybdopterin synthase catalytic subunit compare
GFF1831 -2.4 -3.2 Lipopolysaccharide export system protein LptC compare
GFF4913 -2.4 -3.6 RecBCD enzyme subunit RecB compare
GFF4051 -2.3 -9.0 Acetolactate synthase isozyme 3 small subunit compare
GFF5184 -2.2 -3.3 Holliday junction ATP-dependent DNA helicase RuvB compare
GFF2161 -2.2 -3.0 ATP-dependent DNA helicase DinG compare
GFF3073 -2.2 -2.8 Phosphoribosyl-AMP cyclohydrolase compare
GFF4574 -2.2 -2.9 Molybdenum cofactor biosynthesis protein B compare
GFF411 -2.1 -2.4 Orotate phosphoribosyltransferase compare
GFF5243 -2.0 -5.0 Outer membrane porin F compare
GFF1925 -2.0 -2.5 Cyclic pyranopterin monophosphate synthase compare
GFF1443 -2.0 -4.3 ATP-dependent Clp protease proteolytic subunit compare
GFF266 -2.0 -8.3 putative phosphatase compare
GFF5139 -2.0 -3.6 6-phosphogluconolactonase compare
GFF4617 -2.0 -7.8 HTH-type transcriptional regulator CysB compare
GFF4287 -2.0 -7.1 hypothetical protein compare
GFF2040 -1.9 -2.2 hypothetical protein compare
GFF5251 -1.9 -6.3 Nitrate/nitrite binding protein NrtA compare
GFF44 -1.9 -2.5 Multifunctional CCA protein compare
GFF4186 -1.9 -4.0 Glutamate--cysteine ligase compare
GFF1275 -1.9 -6.6 hypothetical protein compare
GFF5186 -1.8 -3.9 Crossover junction endodeoxyribonuclease RuvC compare
GFF1444 -1.8 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF4126 -1.8 -5.2 ATP-dependent zinc metalloprotease FtsH compare
GFF2957 -1.8 -6.6 Molybdate-binding protein ModA compare
GFF5044 -1.7 -1.7 hypothetical protein compare
GFF3169 -1.7 -5.4 hypothetical protein compare
GFF1839 -1.7 -2.9 putative protein compare
GFF4394 -1.7 -2.7 Cytochrome bo(3) ubiquinol oxidase subunit 1 compare
GFF3166 -1.7 -3.0 D-inositol-3-phosphate glycosyltransferase compare
GFF3724 -1.6 -3.4 hypothetical protein compare
GFF250 -1.6 -1.9 putative membrane protein compare
GFF2248 -1.6 -1.9 hypothetical protein compare
GFF268 -1.6 -8.8 L-threonine dehydratase biosynthetic IlvA compare
GFF773 -1.6 -7.6 Aromatic-amino-acid aminotransferase compare
GFF735 -1.5 -2.1 HTH-type transcriptional regulator CdhR compare
GFF2945 -1.5 -7.6 UTP--glucose-1-phosphate uridylyltransferase compare
GFF420 -1.5 -4.8 2-iminobutanoate/2-iminopropanoate deaminase compare
GFF4877 -1.5 -4.1 Arginine N-succinyltransferase subunit beta compare
GFF2958 -1.4 -5.6 Molybdenum transport system permease protein ModB compare
GFF4872 -1.4 -2.2 6,7-dimethyl-8-ribityllumazine synthase compare
GFF4146 -1.4 -4.2 hypothetical protein compare
GFF4443 -1.4 -4.7 Cell division protein ZapE compare
GFF2012 -1.4 -4.0 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
GFF2538 -1.4 -5.3 Phosphoribosylglycinamide formyltransferase compare
GFF199 -1.4 -3.7 Glutathione synthetase compare
GFF4091 -1.4 -4.2 Carboxy-terminal processing protease CtpB compare
GFF3687 -1.3 -6.6 Methionine synthase compare
GFF3902 -1.3 -4.1 hypothetical protein compare
GFF4512 -1.3 -2.4 hypothetical protein compare
GFF1502 -1.2 -2.5 NADH-quinone oxidoreductase subunit L compare
GFF5192 -1.2 -3.9 hypothetical protein compare
GFF335 -1.2 -4.1 Exopolyphosphatase compare
GFF4996 -1.2 -2.1 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
GFF2194 -1.1 -1.3 hypothetical protein compare
GFF4621 -1.1 -2.0 hypothetical protein compare
GFF4583 -1.1 -2.3 hypothetical protein compare
GFF4103 -1.1 -2.0 putative Fe(2+)-trafficking protein compare
GFF712 -1.1 -1.8 hypothetical protein compare
GFF1035 -1.1 -2.9 hypothetical protein compare
GFF5244 -1.1 -5.1 Uroporphyrinogen-III C-methyltransferase compare
GFF4912 -1.1 -4.7 RecBCD enzyme subunit RecC compare
GFF336 -1.0 -7.6 Polyphosphate kinase compare
GFF3234 -1.0 -1.6 50S ribosomal protein L9 compare
GFF716 -1.0 -2.0 putative copper-importing P-type ATPase A compare
GFF4427 -1.0 -2.5 Transcriptional regulator MraZ compare
GFF2555 -1.0 -1.3 Adenosylcobalamin/alpha-ribazole phosphatase compare
GFF4029 -1.0 -2.7 Poly(A) polymerase I compare
GFF5214 -1.0 -1.8 hypothetical protein compare
GFF481 -1.0 -1.8 putative acyl-CoA thioester hydrolase compare
GFF1598 -1.0 -2.8 hypothetical protein compare
GFF2853 -1.0 -3.7 Alkaline proteinase inhibitor compare
GFF4031 -1.0 -7.0 Adaptive-response sensory-kinase SasA compare
GFF4493 -1.0 -4.1 Beta-barrel assembly-enhancing protease compare
GFF3802 -1.0 -2.6 HTH-type transcriptional activator RhaS compare
GFF293 -1.0 -1.2 Aliphatic sulfonates import ATP-binding protein SsuB compare
GFF2795 -1.0 -1.1 hypothetical protein compare
GFF3084 -1.0 -2.9 hypothetical protein compare
GFF4175 -0.9 -3.5 Phosphoenolpyruvate carboxykinase (ATP) compare
GFF5035 -0.9 -2.9 hypothetical protein compare
GFF1975 -0.9 -1.5 hypothetical protein compare
GFF39 -0.9 -3.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
GFF3638 -0.9 -2.5 hypothetical protein compare
GFF2943 -0.9 -2.3 hypothetical protein compare
GFF4097 -0.9 -2.4 hypothetical protein compare
GFF1411 -0.9 -2.4 hypothetical protein compare
GFF4625 -0.9 -1.9 hypothetical protein compare
GFF3356 -0.9 -3.4 Copper-exporting P-type ATPase compare
GFF2691 -0.9 -1.8 hypothetical protein compare
GFF2454 -0.9 -4.8 STAS-domain containing protein compare
GFF2115 -0.9 -1.9 hypothetical protein compare
GFF3092 -0.9 -4.8 NADP-dependent malic enzyme compare
GFF3706 -0.8 -2.1 hypothetical protein compare
GFF1530 -0.8 -2.4 DNA translocase FtsK compare
GFF991 -0.8 -2.7 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB compare
GFF5200 -0.8 -3.8 Sensor histidine kinase RcsC compare
GFF13 -0.8 -2.4 Protein YhfA compare
GFF4150 -0.8 -5.3 hypothetical protein compare
GFF4064 -0.8 -4.4 HTH-type transcriptional repressor NagR compare
GFF2528 -0.8 -1.0 hypothetical protein compare
GFF5063 -0.8 -5.0 hypothetical protein compare
GFF2501 -0.8 -1.7 2-hydroxy-3-oxopropionate reductase compare
GFF1445 -0.8 -4.0 Lon protease compare
GFF706 -0.8 -2.1 Nucleoid-associated protein YbaB compare
GFF966 -0.8 -1.0 HTH-type transcriptional regulator HdfR compare
GFF3337 -0.8 -1.3 hypothetical protein compare
GFF265 -0.8 -2.8 RNA pyrophosphohydrolase compare
GFF3297 -0.8 -1.5 hypothetical protein compare
GFF1169 -0.7 -0.9 hypothetical protein compare
GFF713 -0.7 -4.3 Oxygen-independent coproporphyrinogen III oxidase compare
GFF670 -0.7 -1.1 Peroxiredoxin OsmC compare
GFF2307 -0.7 -1.8 hypothetical protein compare
GFF3229 -0.7 -2.8 Ribonuclease R compare
GFF4445 -0.7 -1.9 hypothetical protein compare
GFF4879 -0.7 -2.3 Succinylornithine transaminase/acetylornithine aminotransferase compare
GFF1793 -0.7 -1.3 Sensor histidine kinase RegB compare
GFF4161 -0.7 -2.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
GFF1811 -0.7 -1.3 Rod shape-determining protein MreD compare
GFF2182 -0.7 -2.1 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
GFF3014 -0.7 -1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. DMC3 in carbon source experiments

For carbon source Sodium D,L-Lactate across organisms