Experiment set1S27 for Pseudomonas sp. DMC3

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
GFF3196 -5.6 -3.9 Phosphoserine phosphatase SerB2 compare
GFF4099 -5.5 -7.5 Histidine biosynthesis bifunctional protein HisB compare
GFF17 -5.5 -6.5 Anthranilate phosphoribosyltransferase compare
GFF4081 -5.4 -5.2 DNA-binding transcriptional regulator NtrC compare
GFF20 -5.1 -9.8 Anthranilate synthase component 1 compare
GFF5152 -5.0 -9.0 Phosphogluconate dehydratase compare
GFF1604 -5.0 -8.3 putative branched-chain-amino-acid aminotransferase compare
GFF3073 -5.0 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
GFF4052 -4.9 -8.7 Ketol-acid reductoisomerase (NADP(+)) compare
GFF1842 -4.8 -10.3 Histidinol dehydrogenase compare
GFF1841 -4.8 -5.7 ATP phosphoribosyltransferase compare
GFF2051 -4.8 -9.2 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare
GFF4095 -4.8 -4.6 Imidazole glycerol phosphate synthase subunit HisF compare
GFF799 -4.8 -7.2 O-succinylhomoserine sulfhydrylase compare
GFF798 -4.7 -5.6 Amidophosphoribosyltransferase compare
GFF785 -4.7 -4.6 3-isopropylmalate dehydratase large subunit compare
GFF786 -4.7 -3.3 3-isopropylmalate dehydratase small subunit 1 compare
GFF246 -4.7 -7.1 Dihydroxy-acid dehydratase compare
GFF359 -4.7 -4.5 Argininosuccinate lyase compare
GFF3102 -4.6 -15.1 Glutamate synthase [NADPH] large chain compare
GFF212 -4.5 -10.3 Homoserine O-succinyltransferase compare
GFF4080 -4.4 -4.3 Sensory histidine kinase/phosphatase NtrB compare
GFF1304 -4.4 -11.0 Transaldolase B compare
GFF5092 -4.3 -7.2 Argininosuccinate synthase compare
GFF18 -4.2 -3.9 Anthranilate synthase component 2 compare
GFF788 -4.2 -7.5 3-isopropylmalate dehydrogenase compare
GFF5247 -4.2 -14.4 Nitrite reductase [NAD(P)H] compare
GFF3308 -4.1 -5.6 Bifunctional purine biosynthesis protein PurH compare
GFF1824 -4.1 -3.9 Phosphocarrier protein NPr compare
GFF1535 -4.1 -6.7 Siroheme synthase compare
GFF16 -4.0 -7.2 Indole-3-glycerol phosphate synthase compare
GFF793 -4.0 -10.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
GFF5102 -4.0 -14.8 Ornithine carbamoyltransferase 1, anabolic compare
GFF677 -4.0 -3.9 Tryptophan synthase alpha chain compare
GFF2539 -4.0 -4.7 Phosphoribosylformylglycinamidine cyclo-ligase compare
GFF264 -4.0 -9.9 Phosphoenolpyruvate-dependent phosphotransferase system compare
GFF4098 -4.0 -9.2 Imidazole glycerol phosphate synthase subunit HisH compare
GFF213 -3.9 -8.0 Bifunctional methionine biosynthesis protein MetXA/MetW compare
GFF5250 -3.9 -7.9 putative transcriptional regulatory protein pdtaR compare
GFF301 -3.9 -6.5 Amino-acid acetyltransferase compare
GFF407 -3.9 -6.9 Acetylglutamate kinase compare
GFF5140 -3.8 -10.6 Glucose-6-phosphate 1-dehydrogenase compare
GFF676 -3.8 -6.3 Tryptophan synthase beta chain compare
GFF5246 -3.7 -4.4 Assimilatory nitrite reductase [NAD(P)H] small subunit compare
GFF4096 -3.7 -5.5 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino] imidazole-4-carboxamide isomerase compare
GFF3103 -3.7 -7.6 Glutamate synthase [NADPH] small chain compare
GFF3307 -3.7 -2.6 Phosphoribosylamine--glycine ligase compare
GFF5 -3.7 -7.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
GFF3693 -3.7 -7.1 hypothetical protein compare
GFF3224 -3.6 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
GFF4147 -3.6 -4.8 hypothetical protein compare
GFF2289 -3.6 -2.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
GFF2677 -3.6 -4.9 Phosphoadenosine phosphosulfate reductase compare
GFF1962 -3.6 -5.4 Phosphoribosylformylglycinamidine synthase compare
GFF4050 -3.5 -4.8 Acetolactate synthase isozyme 3 large subunit compare
GFF4025 -3.5 -5.4 Glucose-6-phosphate isomerase compare
GFF506 -3.5 -13.7 Oxaloacetate decarboxylase alpha chain compare
GFF507 -3.5 -11.5 2-oxoglutarate carboxylase small subunit compare
GFF4818 -3.4 -9.8 GTP pyrophosphokinase compare
GFF5139 -3.4 -3.3 6-phosphogluconolactonase compare
GFF4051 -3.4 -8.9 Acetolactate synthase isozyme 3 small subunit compare
GFF485 -3.4 -3.2 N5-carboxyaminoimidazole ribonucleotide synthase compare
GFF171 -3.4 -6.4 5,10-methylenetetrahydrofolate reductase compare
GFF44 -3.2 -3.1 Multifunctional CCA protein compare
GFF3692 -3.2 -8.9 Sulfite reductase [ferredoxin] compare
GFF5245 -3.2 -12.4 Nitrate reductase compare
GFF4030 -3.2 -4.8 Transcriptional regulatory protein ZraR compare
GFF2282 -3.1 -2.1 Sulfur carrier protein TusA compare
GFF508 -3.0 -9.2 HTH-type transcriptional activator CmpR compare
GFF4878 -3.0 -10.1 Arginine N-succinyltransferase subunit alpha compare
GFF4034 -3.0 -6.2 RNA polymerase-binding transcription factor DksA compare
GFF582 -2.9 -2.0 hypothetical protein compare
GFF4332 -2.9 -7.4 2-isopropylmalate synthase compare
GFF3072 -2.8 -5.6 Phosphoribosyl-ATP pyrophosphatase compare
GFF274 -2.8 -4.0 D-3-phosphoglycerate dehydrogenase compare
GFF4148 -2.7 -8.9 Inner membrane protein YgaZ compare
GFF4336 -2.6 -2.5 Outer membrane protein assembly factor BamB compare
GFF1849 -2.6 -10.9 Bifunctional enzyme CysN/CysC compare
GFF2538 -2.4 -5.9 Phosphoribosylglycinamide formyltransferase compare
GFF4489 -2.4 -4.3 Molybdopterin-synthase adenylyltransferase compare
GFF418 -2.3 -2.2 DNA-directed RNA polymerase subunit omega compare
GFF5243 -2.3 -4.9 Outer membrane porin F compare
GFF1848 -2.3 -9.3 Sulfate adenylyltransferase subunit 2 compare
GFF2161 -2.3 -3.3 ATP-dependent DNA helicase DinG compare
GFF4914 -2.2 -2.1 RecBCD enzyme subunit RecD compare
GFF2471 -2.2 -3.3 Flagellum site-determining protein YlxH compare
GFF411 -2.1 -2.5 Orotate phosphoribosyltransferase compare
GFF4186 -2.1 -4.2 Glutamate--cysteine ligase compare
GFF4574 -2.1 -2.6 Molybdenum cofactor biosynthesis protein B compare
GFF3171 -2.0 -2.3 D-inositol-3-phosphate glycosyltransferase compare
GFF1839 -2.0 -3.1 putative protein compare
GFF3166 -1.9 -3.4 D-inositol-3-phosphate glycosyltransferase compare
GFF266 -1.8 -7.9 putative phosphatase compare
GFF1774 -1.8 -1.7 hypothetical protein compare
GFF403 -1.7 -1.6 hypothetical protein compare
GFF4913 -1.7 -3.7 RecBCD enzyme subunit RecB compare
GFF966 -1.6 -1.5 HTH-type transcriptional regulator HdfR compare
GFF1444 -1.6 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF5186 -1.6 -3.6 Crossover junction endodeoxyribonuclease RuvC compare
GFF4573 -1.6 -6.3 Molybdopterin molybdenumtransferase compare
GFF4031 -1.6 -9.9 Adaptive-response sensory-kinase SasA compare
GFF1831 -1.6 -2.7 Lipopolysaccharide export system protein LptC compare
GFF4820 -1.6 -4.2 Cysteine synthase B compare
GFF268 -1.6 -9.3 L-threonine dehydratase biosynthetic IlvA compare
GFF5185 -1.5 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
GFF5251 -1.5 -3.9 Nitrate/nitrite binding protein NrtA compare
GFF1651 -1.5 -3.3 Sensor histidine kinase RcsC compare
GFF37 -1.5 -3.0 Ribosomal RNA small subunit methyltransferase A compare
GFF3234 -1.4 -1.8 50S ribosomal protein L9 compare
GFF4161 -1.3 -3.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
GFF5249 -1.3 -5.6 Nitrate transporter compare
GFF4287 -1.3 -5.0 hypothetical protein compare
GFF39 -1.3 -3.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
GFF1925 -1.3 -2.2 Cyclic pyranopterin monophosphate synthase compare
GFF2307 -1.3 -3.0 hypothetical protein compare
GFF4957 -1.2 -2.5 hypothetical protein compare
GFF1813 -1.2 -3.8 Ribonuclease G compare
GFF3169 -1.2 -4.6 hypothetical protein compare
GFF1927 -1.2 -2.2 Molybdopterin synthase catalytic subunit compare
GFF2280 -1.2 -2.4 Periplasmic serine endoprotease DegP compare
GFF4617 -1.2 -5.3 HTH-type transcriptional regulator CysB compare
GFF2012 -1.2 -3.5 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
GFF5192 -1.2 -3.7 hypothetical protein compare
GFF4877 -1.1 -3.9 Arginine N-succinyltransferase subunit beta compare
GFF773 -1.1 -5.0 Aromatic-amino-acid aminotransferase compare
GFF4550 -1.1 -4.0 Thiol-disulfide oxidoreductase ResA compare
GFF3687 -1.1 -5.2 Methionine synthase compare
GFF2945 -1.1 -5.6 UTP--glucose-1-phosphate uridylyltransferase compare
GFF3356 -1.1 -4.1 Copper-exporting P-type ATPase compare
GFF5266 -1.1 -4.7 High-affinity gluconate transporter compare
GFF2191 -1.1 -2.0 hypothetical protein compare
GFF4912 -1.1 -4.9 RecBCD enzyme subunit RecC compare
GFF4216 -1.1 -2.0 Glutamine transport ATP-binding protein GlnQ compare
GFF2454 -1.1 -5.8 STAS-domain containing protein compare
GFF2248 -1.1 -1.4 hypothetical protein compare
GFF744 -1.1 -1.9 Linear gramicidin dehydrogenase LgrE compare
GFF3724 -1.1 -1.3 hypothetical protein compare
GFF2456 -1.1 -3.9 hypothetical protein compare
GFF2287 -1.1 -3.1 Outer membrane protein assembly factor BamC compare
GFF2914 -1.0 -1.7 hypothetical protein compare
GFF336 -1.0 -6.8 Polyphosphate kinase compare
GFF3826 -1.0 -1.9 Transcriptional repressor NrdR compare
GFF4146 -1.0 -3.7 hypothetical protein compare
GFF201 -1.0 -1.2 hypothetical protein compare
GFF2928 -1.0 -3.2 Glyoxylate/hydroxypyruvate reductase B compare
GFF420 -1.0 -3.3 2-iminobutanoate/2-iminopropanoate deaminase compare
GFF335 -1.0 -3.5 Exopolyphosphatase compare
GFF5244 -1.0 -4.8 Uroporphyrinogen-III C-methyltransferase compare
GFF740 -1.0 -1.7 Glucose 1-dehydrogenase compare
GFF2209 -1.0 -1.2 hypothetical protein compare
GFF481 -0.9 -2.1 putative acyl-CoA thioester hydrolase compare
GFF4029 -0.9 -2.0 Poly(A) polymerase I compare
GFF119 -0.9 -2.6 hypothetical protein compare
GFF1275 -0.9 -4.7 hypothetical protein compare
GFF3147 -0.9 -1.7 hypothetical protein compare
GFF476 -0.9 -3.3 Phosphate import ATP-binding protein PstB compare
GFF4499 -0.9 -2.4 Ribosome-binding ATPase YchF compare
GFF4126 -0.9 -3.5 ATP-dependent zinc metalloprotease FtsH compare
GFF4103 -0.9 -1.8 putative Fe(2+)-trafficking protein compare
GFF1443 -0.9 -2.7 ATP-dependent Clp protease proteolytic subunit compare
GFF3161 -0.9 -1.2 Protein InaA compare
GFF4575 -0.9 -1.6 Molybdenum cofactor guanylyltransferase compare
GFF4660 -0.9 -3.5 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
GFF635 -0.9 -2.7 Zinc uptake regulation protein compare
GFF4091 -0.9 -2.8 Carboxy-terminal processing protease CtpB compare
GFF1596 -0.9 -1.4 hypothetical protein compare
GFF2037 -0.9 -2.1 hypothetical protein compare
GFF713 -0.9 -5.0 Oxygen-independent coproporphyrinogen III oxidase compare
GFF4443 -0.8 -3.3 Cell division protein ZapE compare
GFF4376 -0.8 -2.7 hypothetical protein compare
GFF320 -0.8 -4.1 5-formyltetrahydrofolate cyclo-ligase compare
GFF491 -0.8 -1.5 putative HTH-type transcriptional regulator compare
GFF2642 -0.8 -2.8 Polyamine aminopropyltransferase compare
GFF2320 -0.8 -2.3 hypothetical protein compare
GFF1045 -0.8 -1.4 Galactose 1-dehydrogenase compare
GFF3092 -0.8 -4.6 NADP-dependent malic enzyme compare
GFF2252 -0.8 -1.1 hypothetical protein compare
GFF5030 -0.8 -3.2 Pyruvate kinase II compare
GFF1633 -0.8 -1.8 hypothetical protein compare
GFF4992 -0.8 -1.2 Polyribonucleotide nucleotidyltransferase compare
GFF4408 -0.8 -1.8 Adaptive-response sensory-kinase SasA compare
GFF3306 -0.8 -4.5 Sensor histidine kinase RcsC compare
GFF1820 -0.8 -1.8 Fumarate hydratase class II compare
GFF478 -0.8 -4.9 hypothetical protein compare
GFF2417 -0.8 -2.1 Flagellar basal-body rod protein FlgG compare
GFF1417 -0.7 -1.5 hypothetical protein compare
GFF2140 -0.7 -1.4 hypothetical protein compare
GFF4239 -0.7 -0.9 hypothetical protein compare
GFF1598 -0.7 -2.4 hypothetical protein compare
GFF374 -0.7 -3.1 Ammonia channel compare
GFF4990 -0.7 -2.4 tRNA pseudouridine synthase B compare
GFF2596 -0.7 -3.2 putative M18 family aminopeptidase 2 compare
GFF3079 -0.7 -2.6 hypothetical protein compare
GFF1392 -0.7 -2.7 ECF RNA polymerase sigma factor SigK compare
GFF4875 -0.7 -3.8 N-succinylarginine dihydrolase compare
GFF392 -0.7 -2.6 hypothetical protein compare
GFF674 -0.7 -1.7 putative protein YqjD compare
GFF4978 -0.7 -1.6 Transcription elongation factor GreA compare
GFF2008 -0.7 -2.1 hypothetical protein compare
GFF2641 -0.7 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. DMC3 in carbon source experiments

For carbon source D-Glucose across organisms