Experiment set1S27 for Pseudomonas sp. DMC3

Compare to:

D-Glucose carbon source

200 most detrimental genes:

  gene name fitness t score description  
GFF4998 +1.3 2.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
GFF2450 +1.1 5.2 Flagellar motor switch protein FliG compare
GFF1214 +1.1 3.0 Inner membrane protein YqjF compare
GFF2445 +1.0 7.5 Anaerobic nitric oxide reductase transcription regulator NorR compare
GFF1511 +1.0 2.7 NADH-quinone oxidoreductase subunit B compare
GFF2452 +1.0 7.5 Flagellum-specific ATP synthase compare
GFF2259 +1.0 3.4 hypothetical protein compare
GFF28 +0.9 1.4 Response regulator UvrY compare
GFF4862 +0.9 2.0 hypothetical protein compare
GFF2463 +0.9 6.5 Flagellar biosynthetic protein FliP compare
GFF998 +0.9 1.9 HTH-type transcriptional regulator CynR compare
GFF1061 +0.9 2.0 hypothetical protein compare
GFF1115 +0.9 2.0 hypothetical protein compare
GFF2472 +0.9 6.5 RNA polymerase sigma factor FliA compare
GFF3640 +0.9 2.3 hypothetical protein compare
GFF3646 +0.8 4.2 Response regulator GacA compare
GFF2448 +0.8 3.1 Flagellar hook-basal body complex protein FliE compare
GFF2453 +0.8 2.6 hypothetical protein compare
GFF3056 +0.8 1.9 putative siderophore transport system permease protein YfhA compare
GFF2449 +0.8 5.8 Flagellar M-ring protein compare
GFF2419 +0.8 3.5 Flagellar P-ring protein compare
GFF3568 +0.8 1.4 hypothetical protein compare
GFF5260 +0.8 1.6 hypothetical protein compare
GFF2466 +0.8 4.7 Flagellar biosynthetic protein FlhB compare
GFF1265 +0.8 2.1 hypothetical protein compare
GFF1567 +0.7 1.8 hypothetical protein compare
GFF225 +0.7 0.9 Cell division ATP-binding protein FtsE compare
GFF4693 +0.7 1.2 Fumarate hydratase class II compare
GFF2464 +0.7 4.7 Flagellar biosynthetic protein FliQ compare
GFF4437 +0.7 2.6 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
GFF2451 +0.7 4.2 hypothetical protein compare
GFF2625 +0.7 1.6 putative DNA endonuclease SmrA compare
GFF1777 +0.7 1.4 hypothetical protein compare
GFF3603 +0.7 2.7 Transcriptional regulatory protein QseB compare
GFF984 +0.7 1.9 hypothetical protein compare
GFF4922 +0.7 2.7 hypothetical protein compare
GFF1699 +0.7 1.5 hypothetical protein compare
GFF2421 +0.7 5.1 hypothetical protein compare
GFF897 +0.7 2.4 Ribose import binding protein RbsB compare
GFF4882 +0.7 2.2 Histidine transport ATP-binding protein HisP compare
GFF4340 +0.7 2.0 Cytoskeleton protein RodZ compare
GFF3691 +0.7 1.7 hypothetical protein compare
GFF2482 +0.7 2.6 hypothetical protein compare
GFF1773 +0.7 1.8 hypothetical protein compare
GFF2420 +0.6 3.4 hypothetical protein compare
GFF1171 +0.6 1.4 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
GFF2373 +0.6 1.1 hypothetical protein compare
GFF813 +0.6 1.2 hypothetical protein compare
GFF2581 +0.6 1.0 hypothetical protein compare
GFF2915 +0.6 2.0 Sensor protein RstB compare
GFF2418 +0.6 3.8 Flagellar L-ring protein compare
GFF2465 +0.6 3.1 Flagellar biosynthetic protein FliR compare
GFF723 +0.6 1.1 hypothetical protein compare
GFF1951 +0.6 1.9 DNA polymerase III subunit chi compare
GFF588 +0.6 2.5 hypothetical protein compare
GFF4853 +0.6 1.8 hypothetical protein compare
GFF2457 +0.6 4.1 hypothetical protein compare
GFF831 +0.6 2.4 hypothetical protein compare
GFF2543 +0.6 2.6 Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase compare
GFF4746 +0.6 3.8 hypothetical protein compare
GFF5228 +0.6 3.1 hypothetical protein compare
GFF281 +0.6 2.0 hypothetical protein compare
GFF2460 +0.6 3.8 Flagellar motor switch protein FliM compare
GFF1002 +0.6 2.1 Putative glutamate--cysteine ligase 2 compare
GFF3429 +0.6 2.9 hypothetical protein compare
GFF4599 +0.6 1.5 Thiopurine S-methyltransferase compare
GFF1093 +0.6 2.6 hypothetical protein compare
GFF1339 +0.6 1.7 Copper resistance protein C compare
GFF31 +0.6 1.7 Co-chaperone protein DjlA compare
GFF2033 +0.6 2.7 Multidrug resistance protein MdtA compare
GFF1134 +0.6 1.5 IS5 family transposase IS4811 compare
GFF2973 +0.6 1.7 hypothetical protein compare
GFF4524 +0.6 2.9 hypothetical protein compare
GFF4849 +0.6 2.7 Flagellar basal-body rod protein FlgC compare
GFF728 +0.6 2.6 hypothetical protein compare
GFF938 +0.6 2.2 hypothetical protein compare
GFF2422 +0.6 3.8 hypothetical protein compare
GFF2810 +0.6 2.0 Response regulator protein TmoT compare
GFF428 +0.6 3.2 hypothetical protein compare
GFF3456 +0.6 1.1 hypothetical protein compare
GFF2299 +0.6 0.8 hypothetical protein compare
GFF1979 +0.6 1.9 hypothetical protein compare
GFF1472 +0.6 2.7 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
GFF3967 +0.6 2.4 Transcription elongation factor GreB compare
GFF4793 +0.6 1.9 hypothetical protein compare
GFF835 +0.6 1.5 hypothetical protein compare
GFF1376 +0.5 2.3 HTH-type transcriptional regulator NimR compare
GFF5093 +0.5 2.5 Peptidoglycan-associated lipoprotein compare
GFF4659 +0.5 4.4 hypothetical protein compare
GFF4665 +0.5 4.0 N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase compare
GFF643 +0.5 2.5 hypothetical protein compare
GFF1188 +0.5 1.2 hypothetical protein compare
GFF2544 +0.5 1.1 hypothetical protein compare
GFF5091 +0.5 1.8 hypothetical protein compare
GFF2685 +0.5 1.4 hypothetical protein compare
GFF2416 +0.5 2.5 Flagellar basal-body rod protein FlgF compare
GFF1634 +0.5 1.6 hypothetical protein compare
GFF5097 +0.5 2.3 hypothetical protein compare
GFF136 +0.5 1.2 HTH-type transcriptional regulator BetI compare
GFF4365 +0.5 1.2 hypothetical protein compare
GFF319 +0.5 1.9 Cell division protein ZapA compare
GFF4285 +0.5 2.0 hypothetical protein compare
GFF2867 +0.5 2.3 hypothetical protein compare
GFF4847 +0.5 4.3 Flagellar hook protein FlgE compare
GFF2682 +0.5 3.2 hypothetical protein compare
GFF4619 +0.5 1.9 hypothetical protein compare
GFF2663 +0.5 1.8 hypothetical protein compare
GFF1495 +0.5 2.3 Trehalose import ATP-binding protein SugC compare
GFF82 +0.5 1.3 hypothetical protein compare
GFF4403 +0.5 1.5 hypothetical protein compare
GFF892 +0.5 1.7 hypothetical protein compare
GFF819 +0.5 2.7 hypothetical protein compare
GFF2886 +0.5 2.0 Response regulator receiver protein CpdR compare
GFF1486 +0.5 2.6 Toluene efflux pump outer membrane protein TtgI compare
GFF638 +0.5 2.1 hypothetical protein compare
GFF1730 +0.5 0.9 hypothetical protein compare
GFF358 +0.5 2.9 Sensory transduction protein LytR compare
GFF729 +0.5 3.0 Cbb3-type cytochrome c oxidase subunit CcoN1 compare
GFF662 +0.5 0.9 hypothetical protein compare
GFF1635 +0.5 1.8 hypothetical protein compare
GFF381 +0.5 2.0 Glycine cleavage system transcriptional activator compare
GFF3275 +0.5 0.7 Chaperone modulatory protein CbpM compare
GFF2011 +0.5 1.8 Sensor histidine kinase RcsC compare
GFF2931 +0.5 1.2 Glycerate 2-kinase compare
GFF4218 +0.5 2.5 Glutamine transport system permease protein GlnP compare
GFF147 +0.5 1.5 hypothetical protein compare
GFF4225 +0.5 1.7 hypothetical protein compare
GFF3110 +0.5 1.5 hypothetical protein compare
GFF504 +0.5 1.5 hypothetical protein compare
GFF617 +0.5 2.3 Proton/glutamate-aspartate symporter compare
GFF4571 +0.5 2.6 putative lipid kinase YegS compare
GFF4855 +0.5 1.4 hypothetical protein compare
GFF4666 +0.5 3.9 hypothetical protein compare
GFF3113 +0.5 0.9 hypothetical protein compare
GFF3721 +0.5 0.5 Nitrate import ATP-binding protein NrtD compare
GFF5034 +0.5 2.3 hypothetical protein compare
GFF941 +0.5 1.8 hypothetical protein compare
GFF1582 +0.5 2.5 Hydrogen cyanide synthase subunit HcnC compare
GFF811 +0.5 2.1 hypothetical protein compare
GFF2427 +0.5 3.0 hypothetical protein compare
GFF4059 +0.5 2.3 Glycine betaine transport system permease protein OpuAB compare
GFF2469 +0.5 3.2 Flagellar biosynthesis protein FlhA compare
GFF2423 +0.5 3.8 hypothetical protein compare
GFF4304 +0.5 1.7 hypothetical protein compare
GFF907 +0.5 1.3 Cold shock protein CapB compare
GFF5201 +0.5 1.2 Cobalamin adenosyltransferase compare
GFF4868 +0.5 0.9 Translational regulator CsrA2 compare
GFF3557 +0.4 1.9 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
GFF3030 +0.4 1.7 hypothetical protein compare
GFF3297 +0.4 1.2 hypothetical protein compare
GFF4927 +0.4 1.8 hypothetical protein compare
GFF2660 +0.4 1.5 hypothetical protein compare
GFF3127 +0.4 1.2 Acyl carrier protein compare
GFF4053 +0.4 3.1 hypothetical protein compare
GFF5207 +0.4 2.3 hypothetical protein compare
GFF3459 +0.4 1.5 hypothetical protein compare
GFF3684 +0.4 1.0 Precorrin-4 C(11)-methyltransferase compare
GFF3312 +0.4 1.4 Ribosomal protein L11 methyltransferase compare
GFF487 +0.4 2.2 HTH-type transcriptional regulator YjiE compare
GFF1181 +0.4 1.5 hypothetical protein compare
GFF4085 +0.4 1.5 tRNA (cytidine(34)-2'-O)-methyltransferase compare
GFF1388 +0.4 1.2 Delta-aminolevulinic acid dehydratase compare
GFF3661 +0.4 2.0 Twitching mobility protein compare
GFF219 +0.4 1.9 Thiazole synthase compare
GFF3683 +0.4 1.0 Cobalt-precorrin-5A hydrolase compare
GFF3728 +0.4 0.7 Dye-decolorizing peroxidase YfeX compare
GFF137 +0.4 2.4 NAD/NADP-dependent betaine aldehyde dehydrogenase compare
GFF4037 +0.4 2.2 hypothetical protein compare
GFF1906 +0.4 1.1 p-hydroxybenzoic acid efflux pump subunit AaeA compare
GFF2337 +0.4 1.8 hypothetical protein compare
GFF2 +0.4 3.4 hypothetical protein compare
GFF4373 +0.4 0.8 hypothetical protein compare
GFF4401 +0.4 1.5 hypothetical protein compare
GFF1123 +0.4 1.7 HTH-type transcriptional regulator PgrR compare
GFF96 +0.4 0.9 Transcriptional regulatory protein CreB compare
GFF827 +0.4 1.6 hypothetical protein compare
GFF3338 +0.4 1.2 hypothetical protein compare
GFF1104 +0.4 1.1 hypothetical protein compare
GFF448 +0.4 1.4 hypothetical protein compare
GFF4004 +0.4 1.0 Ribosomal large subunit pseudouridine synthase D compare
GFF3503 +0.4 1.9 putative oxidoreductase YgfF compare
GFF2871 +0.4 2.2 hypothetical protein compare
GFF4881 +0.4 2.3 HTH-type transcriptional regulator CdhR compare
GFF2249 +0.4 1.6 hypothetical protein compare
GFF279 +0.4 1.2 hypothetical protein compare
GFF3035 +0.4 2.6 Quinolone resistance transporter compare
GFF1319 +0.4 1.0 hypothetical protein compare
GFF4049 +0.4 1.6 hypothetical protein compare
GFF2039 +0.4 1.4 Major cold shock protein CspA compare
GFF3052 +0.4 1.3 Vitamin B12 import ATP-binding protein BtuD compare
GFF3464 +0.4 0.8 Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperid eine-2-carboxylate reductase compare
GFF1291 +0.4 1.4 hypothetical protein compare
GFF641 +0.4 0.9 Methionine import system permease protein MetP compare
GFF4192 +0.4 2.4 Nitrilotriacetate monooxygenase component A compare
GFF1623 +0.4 1.1 RNA 2',3'-cyclic phosphodiesterase compare
GFF1967 +0.4 2.0 hypothetical protein compare
GFF2963 +0.4 1.0 hypothetical protein compare
GFF5020 +0.4 1.3 Dipeptide transport ATP-binding protein DppD compare
GFF3547 +0.4 2.5 hypothetical protein compare
GFF915 +0.4 1.2 Integration host factor subunit alpha compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. DMC3 in carbon source experiments

For carbon source D-Glucose across organisms