Experiment set1S268 for Sphingobium sp. HT1-2

Compare to:

EMM_noCarbon with Sucrose and Ammonium Sulfate

200 most important genes:

  gene name fitness t score description  
GFF4800 -4.9 -3.4 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF3061 -3.9 -2.7 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
GFF3060 -3.8 -3.7 Imidazole glycerol phosphate synthase amidotransferase subunit HisH compare
GFF217 -3.7 -5.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
GFF2481 -3.6 -5.0 Prephenate dehydratase (EC 4.2.1.51) compare
GFF4764 -3.6 -8.7 Threonine synthase (EC 4.2.3.1) compare
GFF1424 -3.6 -7.3 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
GFF3322 -3.5 -7.9 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
GFF3455 -3.5 -9.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF2057 -3.5 -7.5 Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86) compare
GFF2468 -3.5 -4.2 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF952 -3.5 -7.4 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
GFF3746 -3.5 -3.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
GFF3241 -3.4 -5.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
GFF2270 -3.4 -4.7 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
GFF633 -3.4 -10.7 Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF963 -3.4 -5.6 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
GFF3440 -3.4 -5.6 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF816 -3.3 -7.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
GFF2404 -3.3 -7.4 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) compare
GFF3537 -3.3 -7.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF2056 -3.3 -6.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF2054 -3.3 -10.2 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF3277 -3.3 -8.5 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
GFF3062 -3.3 -7.6 Imidazole glycerol phosphate synthase cyclase subunit compare
GFF2630 -3.3 -12.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF3242 -3.2 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs compare
GFF763 -3.2 -8.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF1668 -3.2 -4.4 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
GFF403 -3.2 -8.3 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF3305 -3.2 -6.2 Histidinol-phosphatase [alternative form] (EC 3.1.3.15) compare
GFF3538 -3.2 -9.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF3439 -3.2 -2.2 Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) compare
GFF1490 -3.2 -6.9 Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) compare
GFF765 -3.2 -15.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF5252 -3.2 -3.8 Prevent host death protein, Phd antitoxin compare
GFF814 -3.2 -9.4 Adenylosuccinate synthetase (EC 6.3.4.4) compare
GFF826 -3.2 -3.1 Cobalamin synthase (EC 2.7.8.26) compare
GFF2628 -3.2 -6.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF2060 -3.2 -10.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
GFF1627 -3.2 -2.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF3697 -3.1 -9.3 Argininosuccinate synthase (EC 6.3.4.5) compare
GFF3058 -3.1 -7.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
GFF215 -3.1 -9.7 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), C-terminal domain compare
GFF216 -3.1 -4.3 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain compare
GFF879 -3.1 -4.8 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
GFF1909 -3.1 -8.1 Chorismate mutase I (EC 5.4.99.5) compare
GFF3334 -3.1 -2.1 Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) compare
GFF825 -3.1 -3.0 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
GFF5413 -3.1 -3.7 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF2491 -3.1 -3.7 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF3059 -3.1 -6.6 hypothetical protein compare
GFF1592 -3.1 -2.1 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF1626 -3.1 -2.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF4169 -3.1 -2.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF3458 -3.1 -9.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF2789 -3.0 -7.3 N-acetylglutamate kinase (EC 2.7.2.8) compare
GFF5113 -3.0 -3.1 hypothetical protein compare
GFF2052 -3.0 -2.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF3770 -3.0 -2.1 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54) compare
GFF2370 -3.0 -10.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF1593 -3.0 -2.1 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF1891 -3.0 -8.4 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF3336 -3.0 -2.1 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) compare
GFF1625 -2.9 -9.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF828 -2.9 -4.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
GFF823 -2.9 -4.0 Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
GFF803 -2.9 -3.5 Chorismate synthase (EC 4.2.3.5) compare
GFF4190 -2.9 -3.4 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF818 -2.9 -5.2 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF79 -2.9 -6.7 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF877 -2.9 -3.9 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis compare
GFF3793 -2.9 -7.4 Argininosuccinate lyase (EC 4.3.2.1) compare
GFF1053 -2.9 -8.5 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF3795 -2.9 -6.1 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF120 -2.8 -5.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF571 -2.8 -2.8 hypothetical protein compare
GFF66 -2.8 -4.3 Cobyric acid synthase (EC 6.3.5.10) compare
GFF1583 -2.8 -1.9 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type compare
GFF2076 -2.8 -1.9 Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1) compare
GFF878 -2.8 -8.4 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) compare
GFF824 -2.8 -4.2 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
GFF1972 -2.8 -5.9 Homoserine kinase (EC 2.7.1.39) compare
GFF3064 -2.7 -5.5 Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
GFF2077 -2.7 -1.9 Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1) compare
GFF3534 -2.7 -8.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF500 -2.7 -5.4 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
GFF1454 -2.7 -2.6 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF142 -2.6 -15.1 Polyhydroxyalkanoic acid synthase compare
GFF1856 -2.6 -5.4 Precorrin-6A reductase (EC 1.3.1.54) compare
GFF4103 -2.6 -2.5 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF645 -2.6 -16.0 Polyhydroxyalkanoic acid synthase compare
GFF1858 -2.6 -3.1 Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) compare
GFF1300 -2.6 -5.7 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF5248 -2.5 -6.1 hypothetical protein compare
GFF1851 -2.5 -5.2 Precorrin-6A synthase (deacetylating) (EC 2.1.1.152) compare
GFF1853 -2.5 -5.1 Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133) compare
GFF1852 -2.5 -6.3 Hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing) (EC 6.3.5.9) compare
GFF2137 -2.5 -4.4 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF1921 -2.4 -10.3 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) compare
GFF246 -2.4 -6.2 Quinolinate synthetase (EC 2.5.1.72) compare
GFF1299 -2.4 -3.3 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF2079 -2.4 -3.2 Enolase (EC 4.2.1.11) compare
GFF1859 -2.4 -3.9 Precorrin-8X methylmutase (EC 5.4.99.61) compare
GFF5251 -2.3 -4.4 Death on curing protein, Doc toxin compare
GFF1559 -2.3 -2.3 LSU ribosomal protein L9p compare
GFF243 -2.3 -6.0 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
GFF3929 -2.3 -2.3 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2416 -2.3 -3.5 Site-specific tyrosine recombinase XerD compare
GFF2132 -2.3 -10.1 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
GFF1521 -2.3 -2.7 hypothetical protein compare
GFF1855 -2.3 -6.2 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132) compare
GFF2893 -2.2 -8.9 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF234 -2.2 -2.6 hypothetical protein compare
GFF2131 -2.2 -9.4 Phosphoglycerate kinase (EC 2.7.2.3) compare
GFF3644 -2.2 -2.6 hypothetical protein compare
GFF3434 -2.1 -2.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF3291 -2.1 -9.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF804 -2.1 -5.2 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) compare
GFF1857 -2.1 -4.8 Precorrin-3B C(17)-methyltransferase (EC 2.1.1.131) compare
GFF1860 -2.1 -6.5 Precorrin-3B synthase compare
GFF1923 -2.1 -8.8 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
GFF1920 -2.1 -10.0 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) compare
GFF4947 -2.1 -11.0 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) compare
GFF3931 -2.0 -5.1 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF5253 -2.0 -7.8 hypothetical protein compare
GFF3783 -2.0 -7.5 L-aspartate oxidase (EC 1.4.3.16) compare
GFF3030 -1.9 -2.5 hypothetical protein compare
GFF5247 -1.9 -11.5 hypothetical protein compare
GFF646 -1.9 -9.2 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF3983 -1.9 -3.7 hypothetical protein compare
GFF1679 -1.9 -7.3 Cysteine desulfurase (EC 2.8.1.7) compare
GFF668 -1.8 -5.4 Rrf2 family transcriptional regulator compare
GFF271 -1.8 -2.5 hypothetical protein compare
GFF1854 -1.8 -3.9 Cobalamin biosynthesis protein CobE compare
GFF60 -1.8 -11.7 Pyruvate,phosphate dikinase (EC 2.7.9.1) compare
GFF3890 -1.8 -2.1 Agmatine deiminase (EC 3.5.3.12) compare
GFF2556 -1.8 -3.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
GFF2311 -1.8 -2.1 Transcriptional regulator, GntR family compare
GFF2891 -1.8 -2.1 putative TonB-dependent receptor compare
GFF4953 -1.7 -2.4 FIG006611: nucleotidyltransferase compare
GFF817 -1.7 -4.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF3927 -1.7 -3.2 hypothetical protein compare
GFF4230 -1.7 -6.1 hypothetical protein compare
GFF2269 -1.7 -5.4 NLP/P60 family lipoprotein compare
GFF219 -1.7 -2.2 hypothetical protein compare
GFF184 -1.6 -4.3 Alkyl hydroperoxide reductase protein C (EC 1.11.1.15) compare
GFF2451 -1.6 -6.2 ATPase compare
GFF5255 -1.6 -6.5 Mobilization protein MobA @ Conjugal transfer protein TraA compare
GFF4915 -1.6 -8.9 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF348 -1.6 -5.2 Capsular polysaccharide export system protein KpsS compare
GFF4258 -1.6 -0.9 hypothetical protein compare
GFF1618 -1.6 -2.1 Transcriptional regulator, AsnC family compare
GFF1222 -1.6 -3.6 hypothetical protein compare
GFF492 -1.6 -2.8 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF3323 -1.6 -6.2 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) compare
GFF2034 -1.6 -6.9 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
GFF4931 -1.6 -3.0 hypothetical protein compare
GFF3027 -1.5 -8.8 HoxN/HupN/NixA family nickel/cobalt transporter compare
GFF949 -1.5 -5.0 hypothetical protein compare
GFF764 -1.5 -5.6 hypothetical protein compare
GFF233 -1.5 -8.7 'Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II' transl_table=11 compare
GFF1594 -1.5 -3.1 Glucokinase (EC 2.7.1.2) compare
GFF2219 -1.5 -2.7 Organic hydroperoxide resistance transcriptional regulator compare
GFF1973 -1.5 -2.1 Ribonuclease HI (EC 3.1.26.4) compare
GFF350 -1.5 -4.3 Capsular polysaccharide glycosyltransferase biosynthesis protein WcbB compare
GFF3645 -1.5 -1.5 Transcriptional regulator, Xre family compare
GFF5181 -1.5 -2.8 hypothetical protein compare
GFF4234 -1.5 -8.7 hypothetical protein compare
GFF3564 -1.5 -2.8 hypothetical protein compare
GFF827 -1.5 -4.4 'Alpha-ribazole-5'-phosphate phosphatase' transl_table=11 compare
GFF1099 -1.5 -1.9 Type IV secretory pathway, VirD2 components (relaxase) compare
GFF3366 -1.5 -1.4 hypothetical protein compare
GFF131 -1.5 -2.8 Methylmalonyl-CoA epimerase (EC 5.1.99.1) @ Ethylmalonyl-CoA epimerase compare
GFF5056 -1.5 -9.6 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF5078 -1.5 -3.2 hypothetical protein compare
GFF1784 -1.4 -3.3 hypothetical protein compare
GFF180 -1.4 -4.5 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF951 -1.4 -5.0 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) compare
GFF5094 -1.4 -6.4 Type IV secretory pathway, VirD2 components (relaxase) compare
GFF5 -1.4 -1.9 DNA-binding protein compare
GFF2890 -1.4 -2.5 PKHD-type hydroxylase YbiX compare
GFF3822 -1.4 -7.0 Sensor histidine kinase ChvG (EC 2.7.3.-) compare
GFF1922 -1.4 -3.1 Glycine cleavage system H protein compare
GFF4055 -1.4 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF4999 -1.4 -1.3 hypothetical protein compare
GFF3819 -1.4 -2.4 PTS system permease (IIAMan), nitrogen regulatory IIA protein compare
GFF2758 -1.3 -2.0 hypothetical protein compare
GFF719 -1.3 -1.7 hypothetical protein compare
GFF3671 -1.3 -2.9 hypothetical protein compare
GFF5042 -1.3 -4.9 hypothetical protein compare
GFF4 -1.3 -3.1 Cytotoxic translational repressor of toxin- antitoxin stability system compare
GFF3603 -1.3 -3.2 DNA methylase, putative compare
GFF5219 -1.3 -2.3 hypothetical protein compare
GFF5409 -1.3 -2.9 hypothetical protein compare
GFF2462 -1.3 -4.8 hypothetical protein compare
GFF1398 -1.3 -2.1 hypothetical protein compare
GFF4075 -1.3 -7.4 Two-component system sensor histidine kinase compare
GFF2369 -1.3 -6.6 hypothetical protein compare
GFF4165 -1.3 -3.3 PTS IIA-like nitrogen-regulatory protein PtsN compare


Specific Phenotypes

None in this experiment

For Sphingobium sp. HT1-2 in carbon and nitrogen source experiments

For carbon and nitrogen source Sucrose across organisms