Experiment set1S267 for Sphingobium sp. HT1-2

Compare to:

EMM_noCarbon with Sucrose and Ammonium Sulfate

200 most important genes:

  gene name fitness t score description  
GFF1909 -5.2 -3.6 Chorismate mutase I (EC 5.4.99.5) compare
GFF4807 -4.8 -3.3 hypothetical protein compare
GFF1812 -4.4 -3.1 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF64 -4.4 -3.0 hypothetical protein compare
GFF217 -4.3 -4.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
GFF2960 -4.1 -2.8 hypothetical protein compare
GFF3291 -4.1 -5.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF952 -4.0 -5.5 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
GFF3455 -4.0 -6.6 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF3537 -4.0 -6.1 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF2630 -4.0 -7.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF2789 -4.0 -5.4 N-acetylglutamate kinase (EC 2.7.2.8) compare
GFF3242 -4.0 -2.7 ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs compare
GFF3060 -3.9 -4.7 Imidazole glycerol phosphate synthase amidotransferase subunit HisH compare
GFF215 -3.9 -2.7 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), C-terminal domain compare
GFF2481 -3.9 -3.8 Prephenate dehydratase (EC 4.2.1.51) compare
GFF3064 -3.8 -3.7 Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
GFF79 -3.8 -3.7 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF3697 -3.8 -5.8 Argininosuccinate synthase (EC 6.3.4.5) compare
GFF3062 -3.8 -5.8 Imidazole glycerol phosphate synthase cyclase subunit compare
GFF3305 -3.8 -2.6 Histidinol-phosphatase [alternative form] (EC 3.1.3.15) compare
GFF1891 -3.8 -4.5 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF814 -3.8 -5.2 Adenylosuccinate synthetase (EC 6.3.4.4) compare
GFF1625 -3.8 -6.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF4764 -3.7 -7.1 Threonine synthase (EC 4.2.3.1) compare
GFF2270 -3.7 -4.4 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
GFF3746 -3.7 -3.6 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
GFF3538 -3.7 -7.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF816 -3.7 -6.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
GFF500 -3.7 -2.5 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
GFF633 -3.7 -8.9 Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF2054 -3.6 -9.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF823 -3.6 -2.5 Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
GFF3061 -3.6 -5.0 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
GFF1424 -3.6 -8.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
GFF2370 -3.6 -7.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF2056 -3.6 -5.5 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF763 -3.5 -7.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF2628 -3.5 -5.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF3439 -3.5 -2.4 Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) compare
GFF963 -3.5 -5.4 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
GFF2404 -3.5 -6.3 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) compare
GFF10 -3.5 -1.5 hypothetical protein compare
GFF765 -3.5 -13.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF2057 -3.5 -8.1 Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86) compare
GFF403 -3.5 -6.7 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF5413 -3.5 -2.4 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF3241 -3.5 -5.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
GFF3058 -3.4 -6.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
GFF3440 -3.4 -5.2 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF267 -3.4 -2.3 hypothetical protein compare
GFF5252 -3.4 -2.3 Prevent host death protein, Phd antitoxin compare
GFF879 -3.4 -3.3 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
GFF216 -3.4 -4.0 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain compare
GFF3534 -3.3 -7.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF3458 -3.3 -8.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF3323 -3.3 -5.9 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) compare
GFF878 -3.3 -5.0 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) compare
GFF1490 -3.3 -7.0 Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) compare
GFF1922 -3.3 -5.0 Glycine cleavage system H protein compare
GFF3277 -3.3 -7.3 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
GFF2468 -3.2 -4.9 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF1053 -3.2 -6.9 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF877 -3.2 -2.2 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis compare
GFF3567 -3.2 -3.8 hypothetical protein compare
GFF3793 -3.2 -5.3 Argininosuccinate lyase (EC 4.3.2.1) compare
GFF4947 -3.2 -10.7 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) compare
GFF2060 -3.1 -10.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
GFF1587 -3.1 -1.9 hypothetical protein compare
GFF1592 -3.0 -2.9 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF1251 -3.0 -1.3 hypothetical protein compare
GFF66 -3.0 -2.0 Cobyric acid synthase (EC 6.3.5.10) compare
GFF3795 -3.0 -4.1 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF1300 -2.9 -2.9 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF1972 -2.9 -5.2 Homoserine kinase (EC 2.7.1.39) compare
GFF142 -2.9 -15.2 Polyhydroxyalkanoic acid synthase compare
GFF5409 -2.9 -1.7 hypothetical protein compare
GFF3322 -2.9 -9.0 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
GFF824 -2.8 -2.8 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
GFF4135 -2.8 -2.0 hypothetical protein compare
GFF3336 -2.8 -1.9 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) compare
GFF828 -2.7 -2.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
GFF1626 -2.7 -1.9 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF3434 -2.7 -1.9 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF818 -2.7 -4.5 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF1668 -2.7 -4.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
GFF1462 -2.7 -1.9 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF1852 -2.7 -3.7 Hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing) (EC 6.3.5.9) compare
GFF120 -2.7 -6.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF4530 -2.7 -3.2 hypothetical protein compare
GFF1627 -2.7 -3.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF825 -2.6 -3.6 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
GFF1593 -2.6 -1.8 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF1454 -2.6 -1.8 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF1855 -2.6 -4.0 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132) compare
GFF246 -2.6 -4.7 Quinolinate synthetase (EC 2.5.1.72) compare
GFF1883 -2.6 -1.5 hypothetical protein compare
GFF826 -2.6 -3.6 Cobalamin synthase (EC 2.7.8.26) compare
GFF803 -2.6 -3.5 Chorismate synthase (EC 4.2.3.5) compare
GFF2052 -2.5 -1.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF3040 -2.5 -2.2 hypothetical protein compare
GFF4800 -2.5 -2.3 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF3770 -2.4 -1.7 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54) compare
GFF4404 -2.4 -1.4 hypothetical protein compare
GFF1853 -2.4 -4.3 Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133) compare
GFF218 -2.4 -4.3 Transcriptional regulator, ArsR family / Methyltransferase fusion compare
GFF3334 -2.4 -1.6 Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) compare
GFF1921 -2.4 -9.5 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) compare
GFF5248 -2.3 -4.4 hypothetical protein compare
GFF4957 -2.3 -1.6 Adenosylhomocysteinase (EC 3.3.1.1) compare
GFF1858 -2.2 -3.1 Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) compare
GFF2256 -2.2 -1.4 hypothetical protein compare
GFF4258 -2.2 -1.8 hypothetical protein compare
GFF3059 -2.2 -4.6 hypothetical protein compare
GFF1583 -2.2 -1.5 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type compare
GFF6 -2.2 -1.9 hypothetical protein compare
GFF2491 -2.2 -3.9 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF2893 -2.2 -7.2 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF3818 -2.2 -3.3 Phosphocarrier protein, nitrogen regulation associated compare
GFF2000 -2.1 -1.5 'Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain' transl_table=11 compare
GFF719 -2.1 -2.0 hypothetical protein compare
GFF33 -2.1 -1.3 hypothetical protein compare
GFF2134 -2.1 -1.7 hypothetical protein compare
GFF645 -2.1 -11.8 Polyhydroxyalkanoic acid synthase compare
GFF1452 -2.1 -1.4 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF1017 -2.1 -2.4 hypothetical protein compare
GFF2132 -2.1 -8.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
GFF1857 -2.1 -3.9 Precorrin-3B C(17)-methyltransferase (EC 2.1.1.131) compare
GFF1856 -2.0 -5.1 Precorrin-6A reductase (EC 1.3.1.54) compare
GFF1682 -2.0 -2.0 hypothetical protein compare
GFF2084 -2.0 -1.2 hypothetical protein compare
GFF951 -2.0 -3.9 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) compare
GFF1851 -2.0 -4.3 Precorrin-6A synthase (deacetylating) (EC 2.1.1.152) compare
GFF1052 -2.0 -1.4 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
GFF4190 -2.0 -3.0 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF1299 -2.0 -2.4 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF4103 -2.0 -1.3 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF233 -2.0 -8.3 'Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II' transl_table=11 compare
GFF1920 -1.9 -9.2 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) compare
GFF2269 -1.9 -4.8 NLP/P60 family lipoprotein compare
GFF115 -1.9 -1.4 DNA topoisomerase I (EC 5.99.1.2) compare
GFF3929 -1.8 -1.3 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2079 -1.8 -2.8 Enolase (EC 4.2.1.11) compare
GFF2131 -1.8 -7.4 Phosphoglycerate kinase (EC 2.7.2.3) compare
GFF4238 -1.8 -1.2 Capsular polysaccharide export system inner membrane protein KpsE compare
GFF4169 -1.8 -2.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF4769 -1.8 -1.5 putative cox locus protein compare
GFF5 -1.8 -1.7 DNA-binding protein compare
GFF600 -1.8 -1.3 Ribonuclease P protein component (EC 3.1.26.5) compare
GFF251 -1.8 -3.2 Site-specific tyrosine recombinase XerC compare
GFF2369 -1.8 -6.3 hypothetical protein compare
GFF5251 -1.8 -2.3 Death on curing protein, Doc toxin compare
GFF3027 -1.7 -8.5 HoxN/HupN/NixA family nickel/cobalt transporter compare
GFF1860 -1.7 -5.1 Precorrin-3B synthase compare
GFF4052 -1.7 -1.2 RfbJ protein compare
GFF3201 -1.7 -1.8 hypothetical protein compare
GFF3783 -1.7 -5.4 L-aspartate oxidase (EC 1.4.3.16) compare
GFF1111 -1.7 -1.2 hypothetical protein compare
GFF4050 -1.7 -2.6 Cell division trigger factor (EC 5.2.1.8) compare
GFF5124 -1.7 -1.0 hypothetical protein compare
GFF3120 -1.7 -1.6 RecA protein compare
GFF1439 -1.6 -1.6 hypothetical protein compare
GFF3189 -1.6 -4.6 Spermidine synthase (EC 2.5.1.16) compare
GFF4206 -1.6 -3.8 Outer membrane beta-barrel assembly protein BamE compare
GFF60 -1.6 -9.7 Pyruvate,phosphate dikinase (EC 2.7.9.1) compare
GFF1923 -1.6 -6.8 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
GFF5281 -1.6 -1.2 hypothetical protein compare
GFF804 -1.6 -3.7 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) compare
GFF4230 -1.6 -4.4 hypothetical protein compare
GFF3902 -1.6 -1.9 hypothetical protein compare
GFF2137 -1.6 -3.8 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF2236 -1.6 -3.0 hypothetical protein compare
GFF4076 -1.5 -3.4 Two-component transcriptional response regulator, LuxR family compare
GFF4806 -1.5 -1.8 hypothetical protein compare
GFF1075 -1.5 -1.5 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF348 -1.5 -3.9 Capsular polysaccharide export system protein KpsS compare
GFF2462 -1.5 -5.0 hypothetical protein compare
GFF180 -1.5 -2.8 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF234 -1.5 -1.2 hypothetical protein compare
GFF3681 -1.5 -1.7 hypothetical protein compare
GFF2925 -1.5 -2.9 hypothetical protein compare
GFF2902 -1.5 -2.9 HtrA protease/chaperone protein compare
GFF3966 -1.5 -3.2 hypothetical protein compare
GFF3541 -1.5 -1.5 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
GFF132 -1.4 -2.0 Methylmalonyl-CoA mutase (EC 5.4.99.2) / B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2) compare
GFF5253 -1.4 -4.8 hypothetical protein compare
GFF3371 -1.4 -0.9 hypothetical protein compare
GFF3931 -1.4 -3.5 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF646 -1.4 -5.4 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF3126 -1.4 -0.9 hypothetical protein compare
GFF243 -1.4 -3.9 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
GFF2482 -1.4 -3.0 Cytochrome c2 compare
GFF2942 -1.4 -2.7 hypothetical protein compare
GFF5160 -1.4 -2.8 hypothetical protein compare
GFF5247 -1.4 -6.8 hypothetical protein compare
GFF2566 -1.4 -5.3 3-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
GFF3030 -1.4 -1.1 hypothetical protein compare
GFF2467 -1.4 -4.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) / YjbR family protein compare
GFF3119 -1.4 -3.0 putative sensory transduction regulatory protein compare
GFF2077 -1.4 -1.6 Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1) compare


Specific Phenotypes

None in this experiment

For Sphingobium sp. HT1-2 in carbon and nitrogen source experiments

For carbon and nitrogen source Sucrose across organisms