Experiment set1S266 for Sphingobium sp. HT1-2

Compare to:

EMM_noCarbon with Sucrose and Ammonium Sulfate

200 most important genes:

  gene name fitness t score description  
GFF3062 -4.1 -4.0 Imidazole glycerol phosphate synthase cyclase subunit compare
GFF3061 -4.1 -2.9 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
GFF3537 -4.1 -5.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF816 -3.8 -6.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
GFF1424 -3.8 -6.9 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
GFF3455 -3.8 -7.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF3538 -3.8 -7.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF4853 -3.8 -2.6 hypothetical protein compare
GFF763 -3.7 -6.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF1625 -3.7 -7.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF3305 -3.7 -3.6 Histidinol-phosphatase [alternative form] (EC 3.1.3.15) compare
GFF217 -3.7 -6.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
GFF3060 -3.7 -5.6 Imidazole glycerol phosphate synthase amidotransferase subunit HisH compare
GFF2054 -3.6 -9.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF2354 -3.6 -2.5 Plasmid stabilization system compare
GFF403 -3.6 -6.0 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF3439 -3.6 -2.5 Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) compare
GFF2270 -3.6 -5.4 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
GFF215 -3.5 -7.6 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), C-terminal domain compare
GFF633 -3.5 -9.4 Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF5413 -3.5 -2.4 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF610 -3.5 -2.4 Uncharacterized proteins YbdD and YjiX compare
GFF3242 -3.5 -3.4 ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs compare
GFF1972 -3.5 -3.4 Homoserine kinase (EC 2.7.1.39) compare
GFF3697 -3.5 -7.8 Argininosuccinate synthase (EC 6.3.4.5) compare
GFF2056 -3.5 -6.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF3277 -3.4 -7.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
GFF963 -3.4 -6.2 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
GFF3322 -3.4 -8.2 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
GFF1299 -3.4 -3.3 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF3458 -3.4 -8.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF3058 -3.4 -7.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
GFF216 -3.4 -4.0 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain compare
GFF571 -3.4 -2.3 hypothetical protein compare
GFF2481 -3.4 -5.1 Prephenate dehydratase (EC 4.2.1.51) compare
GFF3241 -3.3 -6.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
GFF814 -3.3 -8.6 Adenylosuccinate synthetase (EC 6.3.4.4) compare
GFF2789 -3.3 -6.4 N-acetylglutamate kinase (EC 2.7.2.8) compare
GFF765 -3.3 -14.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF2060 -3.3 -10.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
GFF2628 -3.3 -5.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF2370 -3.3 -8.7 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF5404 -3.3 -2.2 hypothetical protein compare
GFF1592 -3.3 -2.2 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF823 -3.2 -3.2 Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
GFF2630 -3.2 -12.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF79 -3.2 -6.2 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF1053 -3.2 -7.1 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF3534 -3.2 -7.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF500 -3.2 -4.3 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
GFF1042 -3.2 -1.4 hypothetical protein compare
GFF828 -3.1 -2.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
GFF1668 -3.1 -4.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
GFF952 -3.1 -8.1 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
GFF2057 -3.0 -8.9 Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86) compare
GFF878 -3.0 -6.5 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) compare
GFF877 -3.0 -2.9 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis compare
GFF1909 -3.0 -6.4 Chorismate mutase I (EC 5.4.99.5) compare
GFF2404 -3.0 -8.1 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) compare
GFF3795 -2.9 -4.5 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF1490 -2.9 -8.4 Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) compare
GFF3440 -2.9 -5.6 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF879 -2.9 -4.4 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
GFF3746 -2.9 -5.6 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
GFF826 -2.9 -2.8 Cobalamin synthase (EC 2.7.8.26) compare
GFF5 -2.9 -2.0 DNA-binding protein compare
GFF4764 -2.8 -9.4 Threonine synthase (EC 4.2.3.1) compare
GFF582 -2.8 -2.7 NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13) compare
GFF1891 -2.8 -8.3 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF803 -2.8 -2.7 Chorismate synthase (EC 4.2.3.5) compare
GFF818 -2.8 -4.3 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF1300 -2.8 -3.8 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF3793 -2.8 -6.7 Argininosuccinate lyase (EC 4.3.2.1) compare
GFF3434 -2.7 -1.9 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF3794 -2.7 -1.6 hypothetical protein compare
GFF1626 -2.7 -1.9 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF1853 -2.7 -3.7 Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133) compare
GFF4725 -2.7 -1.7 hypothetical protein compare
GFF5330 -2.7 -3.1 Mobile element protein compare
GFF2491 -2.7 -3.7 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF4931 -2.6 -3.1 hypothetical protein compare
GFF1618 -2.6 -1.8 Transcriptional regulator, AsnC family compare
GFF1593 -2.6 -1.8 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF3203 -2.6 -1.6 hypothetical protein compare
GFF120 -2.6 -6.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF2468 -2.6 -5.5 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF4800 -2.6 -2.5 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF600 -2.6 -2.1 Ribonuclease P protein component (EC 3.1.26.5) compare
GFF2052 -2.6 -1.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF645 -2.6 -14.6 Polyhydroxyalkanoic acid synthase compare
GFF4873 -2.6 -3.9 hypothetical protein compare
GFF1111 -2.5 -2.0 hypothetical protein compare
GFF3336 -2.5 -2.5 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) compare
GFF824 -2.5 -3.5 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
GFF2131 -2.5 -9.0 Phosphoglycerate kinase (EC 2.7.2.3) compare
GFF3291 -2.5 -6.0 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF3770 -2.5 -1.7 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54) compare
GFF2079 -2.5 -1.7 Enolase (EC 4.2.1.11) compare
GFF4760 -2.5 -1.7 tRNA-modifying protein YgfZ compare
GFF142 -2.5 -13.4 Polyhydroxyalkanoic acid synthase compare
GFF825 -2.5 -3.7 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
GFF1852 -2.5 -4.1 Hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing) (EC 6.3.5.9) compare
GFF66 -2.4 -3.7 Cobyric acid synthase (EC 6.3.5.10) compare
GFF2137 -2.4 -4.3 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF3777 -2.4 -4.3 hypothetical protein compare
GFF4773 -2.4 -3.3 hypothetical protein compare
GFF2132 -2.4 -8.9 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
GFF4190 -2.4 -3.2 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF679 -2.3 -1.8 hypothetical protein compare
GFF4169 -2.3 -1.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF2252 -2.3 -1.8 Uncharacterized protein SMc03999 compare
GFF1856 -2.3 -5.1 Precorrin-6A reductase (EC 1.3.1.54) compare
GFF5252 -2.3 -2.2 Prevent host death protein, Phd antitoxin compare
GFF1851 -2.3 -4.1 Precorrin-6A synthase (deacetylating) (EC 2.1.1.152) compare
GFF1921 -2.3 -9.5 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) compare
GFF1855 -2.2 -4.8 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132) compare
GFF2298 -2.2 -1.8 hypothetical protein compare
GFF4947 -2.2 -9.8 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) compare
GFF3334 -2.2 -2.2 Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) compare
GFF3064 -2.2 -3.3 Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
GFF5251 -2.2 -2.8 Death on curing protein, Doc toxin compare
GFF3569 -2.2 -3.4 hypothetical protein compare
GFF3783 -2.2 -6.2 L-aspartate oxidase (EC 1.4.3.16) compare
GFF1583 -2.2 -1.5 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type compare
GFF1627 -2.2 -3.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF2893 -2.2 -8.5 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF3030 -2.2 -1.7 hypothetical protein compare
GFF1452 -2.1 -1.5 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF33 -2.1 -1.3 hypothetical protein compare
GFF1860 -2.1 -5.3 Precorrin-3B synthase compare
GFF3858 -2.1 -2.9 hypothetical protein compare
GFF1857 -2.1 -3.9 Precorrin-3B C(17)-methyltransferase (EC 2.1.1.131) compare
GFF2901 -2.0 -1.4 HflC protein compare
GFF2269 -2.0 -4.7 NLP/P60 family lipoprotein compare
GFF4103 -2.0 -1.4 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF1052 -2.0 -1.4 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
GFF1859 -2.0 -3.0 Precorrin-8X methylmutase (EC 5.4.99.61) compare
GFF950 -2.0 -1.9 hypothetical protein compare
GFF1920 -2.0 -9.5 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) compare
GFF3645 -2.0 -1.7 Transcriptional regulator, Xre family compare
GFF3931 -2.0 -4.2 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF3929 -1.9 -1.3 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF4217 -1.9 -1.8 hypothetical protein compare
GFF4238 -1.9 -1.3 Capsular polysaccharide export system inner membrane protein KpsE compare
GFF2490 -1.9 -4.8 asparaginase/glutaminase compare
GFF1858 -1.9 -3.1 Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) compare
GFF267 -1.9 -1.6 hypothetical protein compare
GFF781 -1.9 -2.2 Uncharacterized protein SPO3846 compare
GFF1454 -1.8 -2.5 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF1854 -1.8 -2.5 Cobalamin biosynthesis protein CobE compare
GFF243 -1.8 -4.7 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
GFF2076 -1.8 -1.2 Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1) compare
GFF1462 -1.8 -1.7 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF3902 -1.8 -2.3 hypothetical protein compare
GFF3120 -1.8 -1.7 RecA protein compare
GFF4232 -1.8 -4.0 hypothetical protein compare
GFF50 -1.8 -1.2 Phosphoglucomutase (EC 5.4.2.2) compare
GFF681 -1.7 -2.2 Uncharacterized glutathione S-transferase-like protein compare
GFF5124 -1.7 -1.1 hypothetical protein compare
GFF5040 -1.7 -2.0 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF1704 -1.7 -3.3 hypothetical protein compare
GFF4076 -1.7 -3.9 Two-component transcriptional response regulator, LuxR family compare
GFF2413 -1.7 -1.4 Flp pilus assembly protein, pilin Flp compare
GFF1679 -1.7 -5.8 Cysteine desulfurase (EC 2.8.1.7) compare
GFF5295 -1.7 -2.7 hypothetical protein compare
GFF638 -1.7 -1.1 hypothetical protein compare
GFF3238 -1.7 -2.3 hypothetical protein compare
GFF4544 -1.7 -2.5 hypothetical protein compare
GFF60 -1.6 -9.7 Pyruvate,phosphate dikinase (EC 2.7.9.1) compare
GFF2369 -1.6 -6.3 hypothetical protein compare
GFF1958 -1.6 -1.3 hypothetical protein compare
GFF4048 -1.6 -2.3 hypothetical protein compare
GFF4460 -1.6 -1.2 hypothetical protein compare
GFF3748 -1.6 -2.9 hypothetical protein compare
GFF2465 -1.6 -2.2 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
GFF2242 -1.5 -1.0 hypothetical protein compare
GFF4780 -1.5 -3.6 Peptidylprolyl isomerase, FKBP-type (EC 5.2.1.8) compare
GFF3890 -1.5 -1.8 Agmatine deiminase (EC 3.5.3.12) compare
GFF2305 -1.5 -1.4 hypothetical protein compare
GFF4075 -1.5 -7.2 Two-component system sensor histidine kinase compare
GFF2000 -1.5 -1.4 'Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain' transl_table=11 compare
GFF4050 -1.5 -2.7 Cell division trigger factor (EC 5.2.1.8) compare
GFF1682 -1.5 -1.8 hypothetical protein compare
GFF3903 -1.5 -2.6 16 kDa heat shock protein A compare
GFF2177 -1.5 -1.5 hypothetical protein compare
GFF4957 -1.5 -1.7 Adenosylhomocysteinase (EC 3.3.1.1) compare
GFF2982 -1.5 -1.7 hypothetical protein compare
GFF3323 -1.5 -5.3 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) compare
GFF295 -1.5 -2.1 hypothetical protein compare
GFF128 -1.5 -1.5 hypothetical protein compare
GFF2963 -1.4 -1.7 hypothetical protein compare
GFF5086 -1.4 -4.4 hypothetical protein compare
GFF1684 -1.4 -1.6 hypothetical protein compare
GFF5056 -1.4 -7.6 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF3927 -1.4 -2.3 hypothetical protein compare
GFF646 -1.4 -5.6 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF246 -1.4 -4.2 Quinolinate synthetase (EC 2.5.1.72) compare
GFF1923 -1.4 -6.0 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
GFF3266 -1.4 -2.5 hypothetical protein compare
GFF2416 -1.4 -2.5 Site-specific tyrosine recombinase XerD compare


Specific Phenotypes

None in this experiment

For Sphingobium sp. HT1-2 in carbon and nitrogen source experiments

For carbon and nitrogen source Sucrose across organisms