Experiment set1S263 for Sphingobium sp. HT1-2

Compare to:

EMM_noCarbon with Sucrose and Ammonium Sulfate

200 most important genes:

  gene name fitness t score description  
GFF217 -4.8 -9.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
GFF2056 -4.6 -11.2 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF1909 -4.5 -13.0 Chorismate mutase I (EC 5.4.99.5) compare
GFF877 -4.5 -4.4 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis compare
GFF3060 -4.5 -9.6 Imidazole glycerol phosphate synthase amidotransferase subunit HisH compare
GFF3322 -4.5 -14.6 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
GFF952 -4.5 -13.2 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
GFF3305 -4.5 -9.0 Histidinol-phosphatase [alternative form] (EC 3.1.3.15) compare
GFF814 -4.4 -14.7 Adenylosuccinate synthetase (EC 6.3.4.4) compare
GFF3534 -4.4 -12.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF1891 -4.4 -13.5 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF2270 -4.4 -10.6 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
GFF3440 -4.3 -9.7 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF2370 -4.3 -16.5 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF79 -4.3 -11.1 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF3455 -4.3 -15.6 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF3439 -4.3 -4.2 Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) compare
GFF3062 -4.3 -13.9 Imidazole glycerol phosphate synthase cyclase subunit compare
GFF763 -4.3 -14.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF3241 -4.2 -12.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
GFF2054 -4.2 -19.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF1625 -4.2 -15.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF3793 -4.2 -11.8 Argininosuccinate lyase (EC 4.3.2.1) compare
GFF3061 -4.2 -11.8 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
GFF828 -4.2 -5.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
GFF823 -4.2 -6.9 Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
GFF1668 -4.1 -8.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
GFF1490 -4.1 -13.7 Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) compare
GFF2481 -4.1 -12.2 Prephenate dehydratase (EC 4.2.1.51) compare
GFF1626 -4.1 -4.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF2077 -4.1 -2.8 Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1) compare
GFF500 -4.1 -7.9 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
GFF2468 -4.1 -11.2 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF403 -4.1 -14.5 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF963 -4.1 -14.1 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
GFF2404 -4.0 -15.9 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) compare
GFF1593 -4.0 -4.8 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF3795 -4.0 -10.9 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF3277 -4.0 -16.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
GFF2052 -4.0 -7.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF2789 -3.9 -12.4 N-acetylglutamate kinase (EC 2.7.2.8) compare
GFF2491 -3.9 -8.0 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF3458 -3.9 -16.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF4764 -3.9 -17.4 Threonine synthase (EC 4.2.3.1) compare
GFF765 -3.9 -26.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF2057 -3.9 -17.5 Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86) compare
GFF818 -3.9 -8.7 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF215 -3.9 -19.5 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), C-terminal domain compare
GFF3538 -3.9 -17.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF2630 -3.9 -21.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF4169 -3.9 -4.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF633 -3.9 -18.5 Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF2060 -3.9 -19.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
GFF2628 -3.8 -11.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF120 -3.8 -13.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF66 -3.8 -9.2 Cobyric acid synthase (EC 6.3.5.10) compare
GFF3746 -3.8 -10.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
GFF216 -3.8 -11.0 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain compare
GFF3058 -3.8 -13.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
GFF824 -3.8 -7.3 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
GFF816 -3.8 -15.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
GFF1053 -3.8 -14.8 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF803 -3.8 -7.2 Chorismate synthase (EC 4.2.3.5) compare
GFF1972 -3.8 -11.1 Homoserine kinase (EC 2.7.1.39) compare
GFF1424 -3.8 -18.9 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
GFF826 -3.7 -8.7 Cobalamin synthase (EC 2.7.8.26) compare
GFF3770 -3.7 -3.6 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54) compare
GFF1858 -3.7 -5.7 Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) compare
GFF1583 -3.7 -3.6 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type compare
GFF3537 -3.7 -14.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF3336 -3.7 -5.0 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) compare
GFF1627 -3.7 -8.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF5413 -3.7 -7.0 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF1299 -3.6 -5.5 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF1592 -3.6 -8.0 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF3697 -3.6 -16.9 Argininosuccinate synthase (EC 6.3.4.5) compare
GFF878 -3.6 -15.7 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) compare
GFF2079 -3.6 -6.0 Enolase (EC 4.2.1.11) compare
GFF825 -3.6 -8.9 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
GFF1454 -3.6 -5.4 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF3242 -3.4 -9.9 ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs compare
GFF2076 -3.3 -3.9 Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1) compare
GFF4800 -3.3 -3.4 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF4190 -3.3 -9.7 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF3929 -3.3 -3.9 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF1857 -3.3 -8.7 Precorrin-3B C(17)-methyltransferase (EC 2.1.1.131) compare
GFF3334 -3.2 -5.3 Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) compare
GFF1855 -3.1 -11.4 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132) compare
GFF1851 -3.1 -10.3 Precorrin-6A synthase (deacetylating) (EC 2.1.1.152) compare
GFF879 -3.1 -10.9 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
GFF1853 -3.0 -9.8 Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133) compare
GFF1300 -3.0 -11.2 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF1852 -2.9 -11.9 Hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing) (EC 6.3.5.9) compare
GFF1856 -2.9 -11.1 Precorrin-6A reductase (EC 1.3.1.54) compare
GFF3291 -2.9 -13.5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF3434 -2.7 -4.8 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF3064 -2.6 -7.1 Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
GFF1859 -2.6 -7.3 Precorrin-8X methylmutase (EC 5.4.99.61) compare
GFF1860 -2.5 -11.9 Precorrin-3B synthase compare
GFF3059 -2.5 -7.5 hypothetical protein compare
GFF4947 -2.5 -14.4 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) compare
GFF645 -2.4 -17.3 Polyhydroxyalkanoic acid synthase compare
GFF2132 -2.4 -13.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
GFF142 -2.3 -16.4 Polyhydroxyalkanoic acid synthase compare
GFF4760 -2.2 -4.1 tRNA-modifying protein YgfZ compare
GFF719 -2.2 -3.7 hypothetical protein compare
GFF5252 -2.2 -4.9 Prevent host death protein, Phd antitoxin compare
GFF3579 -2.1 -2.8 hypothetical protein compare
GFF234 -2.0 -2.4 hypothetical protein compare
GFF1922 -1.9 -5.2 Glycine cleavage system H protein compare
GFF2131 -1.9 -11.1 Phosphoglycerate kinase (EC 2.7.2.3) compare
GFF3931 -1.9 -7.4 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF2893 -1.9 -10.4 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF1679 -1.9 -10.4 Cysteine desulfurase (EC 2.8.1.7) compare
GFF246 -1.9 -8.1 Quinolinate synthetase (EC 2.5.1.72) compare
GFF60 -1.8 -13.7 Pyruvate,phosphate dikinase (EC 2.7.9.1) compare
GFF1923 -1.8 -10.4 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
GFF1920 -1.8 -11.2 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) compare
GFF348 -1.8 -7.2 Capsular polysaccharide export system protein KpsS compare
GFF1594 -1.8 -4.8 Glucokinase (EC 2.7.1.2) compare
GFF132 -1.8 -4.4 Methylmalonyl-CoA mutase (EC 5.4.99.2) / B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2) compare
GFF1973 -1.7 -3.6 Ribonuclease HI (EC 3.1.26.4) compare
GFF1921 -1.7 -11.0 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) compare
GFF4076 -1.7 -5.4 Two-component transcriptional response regulator, LuxR family compare
GFF2269 -1.7 -6.6 NLP/P60 family lipoprotein compare
GFF3783 -1.7 -9.0 L-aspartate oxidase (EC 1.4.3.16) compare
GFF2369 -1.7 -8.9 hypothetical protein compare
GFF1854 -1.7 -5.2 Cobalamin biosynthesis protein CobE compare
GFF817 -1.7 -4.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF243 -1.7 -7.4 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
GFF3323 -1.6 -7.5 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) compare
GFF350 -1.6 -5.2 Capsular polysaccharide glycosyltransferase biosynthesis protein WcbB compare
GFF64 -1.5 -2.9 hypothetical protein compare
GFF2137 -1.5 -6.3 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF4769 -1.5 -2.0 putative cox locus protein compare
GFF4953 -1.4 -3.1 FIG006611: nucleotidyltransferase compare
GFF2891 -1.4 -2.2 putative TonB-dependent receptor compare
GFF4230 -1.4 -6.8 hypothetical protein compare
GFF2890 -1.3 -3.4 PKHD-type hydroxylase YbiX compare
GFF3669 -1.3 -3.9 D-arabinose-5-phosphate isomerase (EC 5.3.1.13) compare
GFF2900 -1.3 -2.4 HflK protein compare
GFF804 -1.3 -5.2 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) compare
GFF4794 -1.3 -4.6 Mg/Co/Ni transporter MgtE, CBS domain-containing compare
GFF233 -1.2 -7.9 'Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II' transl_table=11 compare
GFF9 -1.2 -2.1 hypothetical protein compare
GFF5247 -1.2 -8.8 hypothetical protein compare
GFF1559 -1.2 -1.7 LSU ribosomal protein L9p compare
GFF4103 -1.1 -2.5 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF646 -1.1 -6.9 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF827 -1.1 -3.3 'Alpha-ribazole-5'-phosphate phosphatase' transl_table=11 compare
GFF2034 -1.1 -6.3 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
GFF51 -1.0 -2.6 hypothetical protein compare
GFF5249 -1.0 -2.7 hypothetical protein compare
GFF951 -1.0 -5.5 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) compare
GFF1451 -1.0 -2.0 Conserved hypothetical protein probably involved in sulfate reduction compare
GFF4234 -1.0 -7.5 hypothetical protein compare
GFF4211 -1.0 -2.5 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) compare
GFF5 -1.0 -2.2 DNA-binding protein compare
GFF5255 -1.0 -5.2 Mobilization protein MobA @ Conjugal transfer protein TraA compare
GFF251 -1.0 -3.7 Site-specific tyrosine recombinase XerC compare
GFF5251 -1.0 -2.7 Death on curing protein, Doc toxin compare
GFF4050 -1.0 -3.7 Cell division trigger factor (EC 5.2.1.8) compare
GFF3201 -0.9 -2.6 hypothetical protein compare
GFF492 -0.9 -2.3 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF4235 -0.9 -5.3 hypothetical protein compare
GFF3671 -0.9 -2.5 hypothetical protein compare
GFF4530 -0.9 -3.1 hypothetical protein compare
GFF5254 -0.9 -4.1 Mobilization protein compare
GFF131 -0.9 -2.3 Methylmalonyl-CoA epimerase (EC 5.1.99.1) @ Ethylmalonyl-CoA epimerase compare
GFF4220 -0.9 -5.9 Mannose-1-phosphate guanylyltransferase (EC 2.7.7.13) compare
GFF3027 -0.8 -6.1 HoxN/HupN/NixA family nickel/cobalt transporter compare
GFF3233 -0.8 -1.5 hypothetical protein compare
GFF5045 -0.8 -5.6 hypothetical protein compare
GFF5056 -0.8 -5.8 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF4795 -0.8 -6.0 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
GFF4075 -0.8 -5.5 Two-component system sensor histidine kinase compare
GFF349 -0.8 -3.6 Capsule polysaccharide export protein compare
GFF4931 -0.8 -3.1 hypothetical protein compare
GFF821 -0.8 -3.9 'Pyridoxal-5'-phosphate phosphatase (EC 3.1.3.74), Alphaproteobacterial type' transl_table=11 compare
GFF3818 -0.8 -3.2 Phosphocarrier protein, nitrogen regulation associated compare
GFF2467 -0.8 -4.4 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) / YjbR family protein compare
GFF949 -0.7 -3.7 hypothetical protein compare
GFF4221 -0.7 -6.0 Phosphomannomutase (EC 5.4.2.8) compare
GFF2036 -0.7 -5.5 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
GFF5248 -0.7 -2.8 hypothetical protein compare
GFF4916 -0.7 -5.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
GFF4915 -0.7 -4.9 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF5078 -0.7 -2.0 hypothetical protein compare
GFF1344 -0.7 -1.7 hypothetical protein compare
GFF3432 -0.7 -1.9 hypothetical protein compare
GFF4784 -0.7 -4.4 Rrf2 family transcriptional regulator, group III compare
GFF764 -0.7 -3.4 hypothetical protein compare
GFF1764 -0.7 -1.2 Outer membrane protein A precursor compare
GFF4797 -0.7 -4.5 hypothetical protein compare
GFF5253 -0.7 -3.9 hypothetical protein compare
GFF4438 -0.7 -3.7 Plasmid replication protein RepA compare
GFF2471 -0.7 -5.1 Polyphosphate kinase (EC 2.7.4.1) compare
GFF3464 -0.7 -3.0 hypothetical protein compare
GFF2007 -0.7 -5.6 Phosphoenolpyruvate-protein phosphotransferase, nitrogen regulation associated compare
GFF4799 -0.6 -4.4 acetyltransferase, GNAT family compare


Specific Phenotypes

None in this experiment

For Sphingobium sp. HT1-2 in carbon and nitrogen source experiments

For carbon and nitrogen source Sucrose across organisms