Experiment set1S261 for Sphingobium sp. HT1-2

Compare to:

EMM_noCarbon with D-Glucose and Ammonium Sulfate

200 most important genes:

  gene name fitness t score description  
GFF4800 -5.5 -5.3 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF1909 -5.0 -11.3 Chorismate mutase I (EC 5.4.99.5) compare
GFF3322 -4.8 -12.7 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
GFF2054 -4.7 -16.7 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF3458 -4.7 -13.8 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF217 -4.7 -10.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
GFF2052 -4.6 -3.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF3061 -4.6 -9.9 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
GFF403 -4.6 -11.9 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF4764 -4.5 -15.8 Threonine synthase (EC 4.2.3.1) compare
GFF2270 -4.5 -9.7 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
GFF3242 -4.5 -7.5 ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs compare
GFF2057 -4.5 -15.7 Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86) compare
GFF814 -4.5 -14.4 Adenylosuccinate synthetase (EC 6.3.4.4) compare
GFF824 -4.5 -4.4 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
GFF2628 -4.5 -10.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF2481 -4.5 -11.2 Prephenate dehydratase (EC 4.2.1.51) compare
GFF3060 -4.4 -9.5 Imidazole glycerol phosphate synthase amidotransferase subunit HisH compare
GFF2789 -4.4 -11.1 N-acetylglutamate kinase (EC 2.7.2.8) compare
GFF3334 -4.4 -3.1 Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) compare
GFF3062 -4.4 -13.0 Imidazole glycerol phosphate synthase cyclase subunit compare
GFF3746 -4.4 -7.9 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
GFF1424 -4.4 -16.7 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
GFF4169 -4.4 -3.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF3241 -4.4 -11.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
GFF2370 -4.4 -16.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF3455 -4.3 -15.8 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF215 -4.3 -17.7 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), C-terminal domain compare
GFF3697 -4.3 -15.3 Argininosuccinate synthase (EC 6.3.4.5) compare
GFF963 -4.3 -12.7 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
GFF952 -4.3 -14.4 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
GFF2060 -4.3 -19.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
GFF2076 -4.3 -2.9 Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1) compare
GFF2630 -4.3 -21.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF1490 -4.2 -13.7 Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) compare
GFF2056 -4.2 -13.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF1626 -4.2 -4.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF1891 -4.2 -14.6 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF1668 -4.2 -8.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
GFF500 -4.2 -8.0 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
GFF803 -4.2 -5.7 Chorismate synthase (EC 4.2.3.5) compare
GFF79 -4.2 -12.0 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF3277 -4.2 -15.6 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
GFF826 -4.2 -7.0 Cobalamin synthase (EC 2.7.8.26) compare
GFF3534 -4.2 -13.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF1972 -4.2 -10.0 Homoserine kinase (EC 2.7.1.39) compare
GFF3058 -4.1 -13.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
GFF3795 -4.1 -10.7 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF765 -4.1 -26.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF216 -4.1 -9.9 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain compare
GFF3305 -4.1 -11.2 Histidinol-phosphatase [alternative form] (EC 3.1.3.15) compare
GFF5413 -4.1 -6.2 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF825 -4.1 -6.8 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
GFF816 -4.1 -15.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
GFF1625 -4.1 -16.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF763 -4.1 -15.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF633 -4.1 -18.7 Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF3336 -4.0 -3.9 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) compare
GFF3793 -4.0 -12.9 Argininosuccinate lyase (EC 4.3.2.1) compare
GFF3439 -4.0 -5.5 Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) compare
GFF879 -4.0 -9.3 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
GFF3440 -4.0 -11.1 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF66 -3.9 -9.5 Cobyric acid synthase (EC 6.3.5.10) compare
GFF3538 -3.9 -17.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF1592 -3.9 -7.5 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF1053 -3.9 -14.9 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF1627 -3.9 -7.4 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF878 -3.9 -15.1 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) compare
GFF3537 -3.9 -14.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF2404 -3.9 -16.7 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) compare
GFF1853 -3.8 -8.8 Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133) compare
GFF877 -3.8 -7.3 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis compare
GFF3770 -3.8 -3.7 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54) compare
GFF828 -3.8 -7.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
GFF2079 -3.8 -6.2 Enolase (EC 4.2.1.11) compare
GFF2468 -3.7 -11.9 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF818 -3.7 -9.5 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF3064 -3.7 -8.8 Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
GFF2077 -3.7 -3.6 Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1) compare
GFF1593 -3.6 -6.0 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF823 -3.6 -8.1 Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
GFF2893 -3.6 -16.4 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF1454 -3.6 -5.5 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF1857 -3.6 -8.3 Precorrin-3B C(17)-methyltransferase (EC 2.1.1.131) compare
GFF1859 -3.6 -7.2 Precorrin-8X methylmutase (EC 5.4.99.61) compare
GFF1851 -3.5 -10.2 Precorrin-6A synthase (deacetylating) (EC 2.1.1.152) compare
GFF1852 -3.4 -11.6 Hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing) (EC 6.3.5.9) compare
GFF4190 -3.4 -9.5 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF1856 -3.4 -11.0 Precorrin-6A reductase (EC 1.3.1.54) compare
GFF142 -3.4 -20.9 Polyhydroxyalkanoic acid synthase compare
GFF645 -3.3 -21.4 Polyhydroxyalkanoic acid synthase compare
GFF2491 -3.3 -9.1 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF1594 -3.2 -6.1 Glucokinase (EC 2.7.1.2) compare
GFF1300 -3.2 -11.0 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF3929 -3.1 -4.2 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2132 -3.0 -15.7 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
GFF1299 -2.9 -5.9 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF1858 -2.9 -6.7 Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) compare
GFF3931 -2.9 -9.5 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF1860 -2.9 -12.7 Precorrin-3B synthase compare
GFF1855 -2.8 -11.6 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132) compare
GFF2131 -2.7 -13.1 Phosphoglycerate kinase (EC 2.7.2.3) compare
GFF2369 -2.6 -13.5 hypothetical protein compare
GFF2254 -2.6 -6.4 DksA family protein PA5536 (no Zn-finger) compare
GFF1583 -2.5 -4.1 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type compare
GFF1559 -2.4 -3.0 LSU ribosomal protein L9p compare
GFF1854 -2.4 -6.6 Cobalamin biosynthesis protein CobE compare
GFF3783 -2.4 -11.9 L-aspartate oxidase (EC 1.4.3.16) compare
GFF132 -2.3 -5.3 Methylmalonyl-CoA mutase (EC 5.4.99.2) / B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2) compare
GFF2416 -2.3 -6.1 Site-specific tyrosine recombinase XerD compare
GFF3059 -2.3 -7.2 hypothetical protein compare
GFF246 -2.2 -9.4 Quinolinate synthetase (EC 2.5.1.72) compare
GFF234 -2.1 -2.7 hypothetical protein compare
GFF3434 -2.1 -3.4 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF2137 -2.1 -6.8 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF4947 -2.0 -13.4 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) compare
GFF2034 -2.0 -10.7 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
GFF243 -1.8 -7.5 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
GFF1679 -1.8 -9.6 Cysteine desulfurase (EC 2.8.1.7) compare
GFF120 -1.8 -9.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF4076 -1.7 -6.2 Two-component transcriptional response regulator, LuxR family compare
GFF1618 -1.7 -2.3 Transcriptional regulator, AsnC family compare
GFF1462 -1.6 -2.3 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF1922 -1.6 -5.9 Glycine cleavage system H protein compare
GFF3890 -1.6 -3.0 Agmatine deiminase (EC 3.5.3.12) compare
GFF804 -1.5 -5.2 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) compare
GFF1920 -1.5 -10.6 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) compare
GFF5252 -1.5 -2.5 Prevent host death protein, Phd antitoxin compare
GFF1921 -1.4 -9.7 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) compare
GFF719 -1.4 -2.0 hypothetical protein compare
GFF1923 -1.4 -8.1 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
GFF5 -1.4 -2.6 DNA-binding protein compare
GFF1651 -1.3 -9.8 Inner membrane protein, KefB/KefC family compare
GFF3323 -1.3 -6.9 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) compare
GFF1764 -1.3 -2.1 Outer membrane protein A precursor compare
GFF827 -1.3 -5.4 'Alpha-ribazole-5'-phosphate phosphatase' transl_table=11 compare
GFF233 -1.2 -7.7 'Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II' transl_table=11 compare
GFF348 -1.1 -5.2 Capsular polysaccharide export system protein KpsS compare
GFF9 -1.1 -2.0 hypothetical protein compare
GFF4953 -1.1 -2.5 FIG006611: nucleotidyltransferase compare
GFF4170 -1.0 -5.6 Maf-like protein compare
GFF646 -1.0 -6.9 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF817 -1.0 -3.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF2269 -1.0 -4.3 NLP/P60 family lipoprotein compare
GFF4760 -1.0 -2.3 tRNA-modifying protein YgfZ compare
GFF4258 -1.0 -1.4 hypothetical protein compare
GFF5160 -1.0 -4.1 hypothetical protein compare
GFF1460 -1.0 -3.8 glycoside hydrolase, family 25 compare
GFF4964 -0.9 -7.2 Hydrolase, alpha/beta fold family compare
GFF2219 -0.9 -2.6 Organic hydroperoxide resistance transcriptional regulator compare
GFF3027 -0.9 -6.6 HoxN/HupN/NixA family nickel/cobalt transporter compare
GFF4075 -0.9 -6.4 Two-component system sensor histidine kinase compare
GFF350 -0.9 -3.3 Capsular polysaccharide glycosyltransferase biosynthesis protein WcbB compare
GFF764 -0.9 -3.6 hypothetical protein compare
GFF21 -0.9 -3.7 hypothetical protein compare
GFF4565 -0.9 -3.0 hypothetical protein compare
GFF3670 -0.9 -2.6 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) compare
GFF3569 -0.8 -3.0 hypothetical protein compare
GFF4916 -0.8 -6.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
GFF659 -0.8 -3.3 Phosphohistidine phosphatase SixA compare
GFF4165 -0.8 -3.7 PTS IIA-like nitrogen-regulatory protein PtsN compare
GFF5056 -0.8 -5.9 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF831 -0.8 -3.1 hypothetical protein compare
GFF5254 -0.8 -4.1 Mobilization protein compare
GFF1973 -0.8 -1.7 Ribonuclease HI (EC 3.1.26.4) compare
GFF2036 -0.8 -6.2 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
GFF128 -0.8 -3.2 hypothetical protein compare
GFF2394 -0.8 -2.4 hypothetical protein compare
GFF3030 -0.8 -1.7 hypothetical protein compare
GFF5247 -0.8 -6.1 hypothetical protein compare
GFF5255 -0.8 -4.3 Mobilization protein MobA @ Conjugal transfer protein TraA compare
GFF4763 -0.8 -4.7 SAM-dependent methyltransferase compare
GFF3818 -0.8 -2.9 Phosphocarrier protein, nitrogen regulation associated compare
GFF1521 -0.8 -1.7 hypothetical protein compare
GFF951 -0.7 -3.7 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) compare
GFF180 -0.7 -3.6 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF5250 -0.7 -1.9 Replication protein compare
GFF4438 -0.7 -4.0 Plasmid replication protein RepA compare
GFF3291 -0.7 -4.7 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF3120 -0.7 -2.0 RecA protein compare
GFF360 -0.7 -2.9 Uncharacterized protein YfgD, not an arsenate reductase compare
GFF60 -0.7 -6.0 Pyruvate,phosphate dikinase (EC 2.7.9.1) compare
GFF5253 -0.7 -4.2 hypothetical protein compare
GFF4401 -0.7 -3.0 hypothetical protein compare
GFF4777 -0.7 -5.0 Signal peptidase I (EC 3.4.21.89) compare
GFF610 -0.7 -2.2 Uncharacterized proteins YbdD and YjiX compare
GFF4940 -0.7 -3.1 hypothetical protein compare
GFF4898 -0.7 -4.1 hypothetical protein compare
GFF5102 -0.7 -5.4 TnpR protein compare
GFF2467 -0.7 -3.5 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) / YjbR family protein compare
GFF3561 -0.7 -2.5 hypothetical protein compare
GFF5241 -0.7 -4.1 Transcriptional regulator, AcrR family compare
GFF4610 -0.7 -5.4 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
GFF747 -0.7 -4.4 DNA recombination protein RmuC compare
GFF949 -0.7 -3.3 hypothetical protein compare
GFF4780 -0.6 -3.2 Peptidylprolyl isomerase, FKBP-type (EC 5.2.1.8) compare
GFF4796 -0.6 -4.0 hypothetical protein compare
GFF5089 -0.6 -4.9 hypothetical protein compare
GFF3346 -0.6 -3.8 RidA/YER057c/UK114 superfamily, group 1 compare
GFF3138 -0.6 -1.8 Translation elongation factor LepA compare


Specific Phenotypes

None in this experiment

For Sphingobium sp. HT1-2 in carbon and nitrogen source experiments

For carbon and nitrogen source D-Glucose across organisms