Experiment set1S260 for Sphingobium sp. HT1-2

Compare to:

EMM_noCarbon with D-Glucose and Ammonium Sulfate

200 most important genes:

  gene name fitness t score description  
GFF3455 -5.0 -10.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF3242 -4.9 -4.8 ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs compare
GFF4800 -4.8 -4.7 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF952 -4.8 -9.7 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
GFF2057 -4.8 -11.5 Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86) compare
GFF3439 -4.7 -3.2 Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) compare
GFF1625 -4.6 -12.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF3537 -4.6 -10.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF3061 -4.6 -8.2 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
GFF1891 -4.6 -11.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF1909 -4.6 -10.2 Chorismate mutase I (EC 5.4.99.5) compare
GFF2481 -4.5 -7.5 Prephenate dehydratase (EC 4.2.1.51) compare
GFF2054 -4.5 -15.6 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF816 -4.4 -10.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
GFF2630 -4.4 -17.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF763 -4.4 -10.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF814 -4.4 -12.1 Adenylosuccinate synthetase (EC 6.3.4.4) compare
GFF215 -4.4 -13.9 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), C-terminal domain compare
GFF3793 -4.4 -7.9 Argininosuccinate lyase (EC 4.3.2.1) compare
GFF216 -4.4 -6.7 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain compare
GFF2789 -4.4 -9.3 N-acetylglutamate kinase (EC 2.7.2.8) compare
GFF403 -4.3 -10.1 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF9 -4.3 -3.0 hypothetical protein compare
GFF824 -4.3 -3.0 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
GFF217 -4.3 -9.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
GFF4764 -4.3 -12.7 Threonine synthase (EC 4.2.3.1) compare
GFF3534 -4.3 -10.8 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF633 -4.3 -14.0 Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF2060 -4.3 -15.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
GFF2056 -4.3 -10.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF3538 -4.3 -14.0 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF963 -4.2 -11.0 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
GFF2491 -4.2 -4.1 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF2628 -4.2 -8.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF5413 -4.2 -4.1 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF823 -4.2 -5.0 Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
GFF1592 -4.2 -5.0 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF3746 -4.2 -8.0 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
GFF2468 -4.2 -7.9 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF2270 -4.1 -10.0 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
GFF1490 -4.1 -12.4 Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) compare
GFF877 -4.1 -4.0 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis compare
GFF1972 -4.1 -7.9 Homoserine kinase (EC 2.7.1.39) compare
GFF500 -4.1 -6.8 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
GFF3322 -4.1 -13.6 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
GFF1424 -4.1 -15.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
GFF765 -4.1 -21.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF3241 -4.1 -10.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
GFF3062 -4.1 -11.7 Imidazole glycerol phosphate synthase cyclase subunit compare
GFF3697 -4.0 -13.6 Argininosuccinate synthase (EC 6.3.4.5) compare
GFF2370 -4.0 -14.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF3305 -4.0 -8.5 Histidinol-phosphatase [alternative form] (EC 3.1.3.15) compare
GFF878 -3.9 -10.4 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) compare
GFF3440 -3.9 -8.7 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF3058 -3.9 -12.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
GFF3060 -3.9 -8.5 Imidazole glycerol phosphate synthase amidotransferase subunit HisH compare
GFF3458 -3.9 -14.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF1053 -3.9 -11.6 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF3277 -3.8 -13.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
GFF3795 -3.8 -7.8 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF1300 -3.8 -5.8 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF4769 -3.8 -2.3 putative cox locus protein compare
GFF879 -3.7 -7.1 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
GFF2052 -3.7 -2.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF2132 -3.7 -14.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
GFF2404 -3.7 -14.1 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) compare
GFF3770 -3.6 -2.5 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54) compare
GFF1626 -3.6 -3.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF826 -3.6 -5.5 Cobalamin synthase (EC 2.7.8.26) compare
GFF79 -3.6 -10.2 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF1668 -3.5 -7.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
GFF828 -3.5 -4.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
GFF1454 -3.4 -3.3 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF1852 -3.4 -6.6 Hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing) (EC 6.3.5.9) compare
GFF1854 -3.4 -4.1 Cobalamin biosynthesis protein CobE compare
GFF1593 -3.4 -4.0 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF1853 -3.4 -7.2 Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133) compare
GFF3336 -3.4 -4.0 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) compare
GFF818 -3.4 -7.8 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF1858 -3.3 -5.0 Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) compare
GFF1583 -3.3 -2.3 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type compare
GFF2893 -3.3 -14.8 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF142 -3.3 -17.5 Polyhydroxyalkanoic acid synthase compare
GFF66 -3.3 -7.0 Cobyric acid synthase (EC 6.3.5.10) compare
GFF645 -3.2 -18.2 Polyhydroxyalkanoic acid synthase compare
GFF3064 -3.2 -6.4 Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
GFF3334 -3.1 -3.7 Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) compare
GFF825 -3.1 -6.3 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
GFF1855 -3.1 -8.2 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132) compare
GFF1627 -3.1 -7.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF4169 -3.1 -3.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF803 -3.1 -6.8 Chorismate synthase (EC 4.2.3.5) compare
GFF1299 -3.0 -4.9 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF4190 -2.9 -5.6 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF2131 -2.9 -13.1 Phosphoglycerate kinase (EC 2.7.2.3) compare
GFF1851 -2.9 -8.2 Precorrin-6A synthase (deacetylating) (EC 2.1.1.152) compare
GFF4957 -2.8 -2.7 Adenosylhomocysteinase (EC 3.3.1.1) compare
GFF1857 -2.8 -6.7 Precorrin-3B C(17)-methyltransferase (EC 2.1.1.131) compare
GFF3434 -2.8 -3.3 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF4052 -2.7 -1.9 RfbJ protein compare
GFF1594 -2.7 -4.1 Glucokinase (EC 2.7.1.2) compare
GFF1860 -2.7 -9.3 Precorrin-3B synthase compare
GFF2079 -2.6 -4.9 Enolase (EC 4.2.1.11) compare
GFF1856 -2.6 -9.4 Precorrin-6A reductase (EC 1.3.1.54) compare
GFF3929 -2.6 -2.5 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF5113 -2.5 -1.6 hypothetical protein compare
GFF1452 -2.5 -2.4 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF234 -2.5 -2.2 hypothetical protein compare
GFF4050 -2.4 -4.9 Cell division trigger factor (EC 5.2.1.8) compare
GFF2219 -2.4 -2.8 Organic hydroperoxide resistance transcriptional regulator compare
GFF2077 -2.3 -3.1 Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1) compare
GFF2137 -2.3 -5.5 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF2000 -2.3 -2.6 'Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain' transl_table=11 compare
GFF243 -2.2 -6.6 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
GFF1859 -2.1 -4.9 Precorrin-8X methylmutase (EC 5.4.99.61) compare
GFF2076 -2.1 -2.5 Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1) compare
GFF3059 -2.1 -5.3 hypothetical protein compare
GFF3931 -2.1 -6.4 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF3783 -2.1 -9.3 L-aspartate oxidase (EC 1.4.3.16) compare
GFF4947 -2.0 -11.2 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) compare
GFF226 -2.0 -3.0 hypothetical protein compare
GFF2369 -2.0 -8.7 hypothetical protein compare
GFF2034 -2.0 -8.6 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
GFF1679 -1.9 -8.7 Cysteine desulfurase (EC 2.8.1.7) compare
GFF4129 -1.9 -2.2 Chromosome (plasmid) partitioning protein ParB compare
GFF3233 -1.9 -2.1 hypothetical protein compare
GFF2254 -1.9 -3.5 DksA family protein PA5536 (no Zn-finger) compare
GFF1052 -1.9 -2.2 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
GFF5404 -1.8 -2.1 hypothetical protein compare
GFF4238 -1.8 -2.0 Capsular polysaccharide export system inner membrane protein KpsE compare
GFF246 -1.8 -6.6 Quinolinate synthetase (EC 2.5.1.72) compare
GFF3569 -1.8 -4.0 hypothetical protein compare
GFF2416 -1.7 -3.9 Site-specific tyrosine recombinase XerD compare
GFF2269 -1.7 -5.3 NLP/P60 family lipoprotein compare
GFF4076 -1.6 -5.0 Two-component transcriptional response regulator, LuxR family compare
GFF1920 -1.6 -9.3 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) compare
GFF48 -1.6 -1.8 GTP-binding and nucleic acid-binding protein YchF compare
GFF120 -1.6 -9.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF4404 -1.6 -1.7 hypothetical protein compare
GFF3927 -1.6 -3.4 hypothetical protein compare
GFF3371 -1.6 -1.4 hypothetical protein compare
GFF1618 -1.5 -1.5 Transcriptional regulator, AsnC family compare
GFF3818 -1.5 -3.3 Phosphocarrier protein, nitrogen regulation associated compare
GFF2053 -1.5 -3.6 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF1921 -1.5 -8.3 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) compare
GFF1451 -1.5 -2.2 Conserved hypothetical protein probably involved in sulfate reduction compare
GFF827 -1.5 -4.5 'Alpha-ribazole-5'-phosphate phosphatase' transl_table=11 compare
GFF804 -1.4 -3.9 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) compare
GFF659 -1.4 -4.6 Phosphohistidine phosphatase SixA compare
GFF638 -1.4 -1.4 hypothetical protein compare
GFF1462 -1.4 -2.2 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF1922 -1.3 -3.7 Glycine cleavage system H protein compare
GFF2787 -1.3 -2.1 Cell division integral membrane protein, YggT and half-length relatives compare
GFF1923 -1.3 -7.6 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
GFF719 -1.3 -1.6 hypothetical protein compare
GFF4211 -1.3 -3.0 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) compare
GFF3203 -1.3 -1.4 hypothetical protein compare
GFF5253 -1.3 -5.1 hypothetical protein compare
GFF3578 -1.3 -2.9 hypothetical protein compare
GFF644 -1.3 -3.4 hypothetical protein compare
GFF3790 -1.3 -1.0 hypothetical protein compare
GFF3670 -1.3 -2.8 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) compare
GFF1986 -1.2 -1.1 hypothetical protein compare
GFF2890 -1.2 -2.0 PKHD-type hydroxylase YbiX compare
GFF5 -1.2 -1.9 DNA-binding protein compare
GFF2236 -1.2 -2.7 hypothetical protein compare
GFF134 -1.2 -2.6 hypothetical protein compare
GFF3323 -1.2 -4.8 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) compare
GFF348 -1.2 -4.9 Capsular polysaccharide export system protein KpsS compare
GFF4565 -1.2 -2.1 hypothetical protein compare
GFF3577 -1.2 -2.9 hypothetical protein compare
GFF2235 -1.1 -3.5 Calcium-binding EF-hand compare
GFF2913 -1.1 -2.2 hypothetical protein compare
GFF831 -1.1 -3.5 hypothetical protein compare
GFF5056 -1.1 -5.9 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF2653 -1.1 -2.0 Phosphate ABC transporter, permease protein PstC (TC 3.A.1.7.1) compare
GFF321 -1.1 -1.9 hypothetical protein compare
GFF3784 -1.1 -1.9 hypothetical protein compare
GFF1651 -1.1 -7.8 Inner membrane protein, KefB/KefC family compare
GFF1074 -1.1 -1.1 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF2902 -1.1 -3.2 HtrA protease/chaperone protein compare
GFF1574 -1.1 -2.9 FolM Alternative dihydrofolate reductase 1 compare
GFF4964 -1.1 -7.7 Hydrolase, alpha/beta fold family compare
GFF982 -1.1 -1.7 FIG00636713: repeated hypothetical protein compare
GFF4725 -1.0 -1.1 hypothetical protein compare
GFF2526 -1.0 -1.9 hypothetical protein compare
GFF646 -1.0 -5.1 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF50 -1.0 -1.4 Phosphoglucomutase (EC 5.4.2.2) compare
GFF5254 -1.0 -3.6 Mobilization protein compare
GFF3428 -1.0 -1.4 hypothetical protein compare
GFF1460 -1.0 -3.2 glycoside hydrolase, family 25 compare
GFF4953 -1.0 -1.8 FIG006611: nucleotidyltransferase compare
GFF5247 -1.0 -6.1 hypothetical protein compare
GFF2084 -1.0 -0.9 hypothetical protein compare
GFF4496 -1.0 -1.2 hypothetical protein compare
GFF1075 -1.0 -1.7 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF4170 -1.0 -5.1 Maf-like protein compare
GFF953 -0.9 -1.1 hypothetical protein compare
GFF3641 -0.9 -2.7 hypothetical protein compare
GFF1764 -0.9 -1.6 Outer membrane protein A precursor compare


Specific Phenotypes

None in this experiment

For Sphingobium sp. HT1-2 in carbon and nitrogen source experiments

For carbon and nitrogen source D-Glucose across organisms