Experiment set1S26 for Azospirillum sp. SherDot2

Compare to:

NL-CCM, start OD=0.1

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_04551 +1.3 2.8 HTH-type transcriptional repressor RspR compare
MPMX19_00074 +1.0 3.8 Electron transfer flavoprotein subunit beta compare
MPMX19_01401 +1.0 2.9 Ubiquinone biosynthesis accessory factor UbiK compare
MPMX19_00167 +1.0 2.2 hypothetical protein compare
MPMX19_04638 +0.9 2.7 D-inositol-3-phosphate glycosyltransferase compare
MPMX19_02618 +0.9 2.2 Transcriptional regulatory protein BaeR compare
MPMX19_03095 +0.9 2.4 hypothetical protein compare
MPMX19_04687 +0.8 2.9 Atrazine chlorohydrolase compare
MPMX19_02031 +0.8 2.0 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ compare
MPMX19_05430 +0.8 2.0 HTH-type transcriptional regulator DmlR compare
MPMX19_06488 +0.8 1.9 Taurine-binding periplasmic protein compare
MPMX19_02063 +0.8 3.0 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_01479 +0.8 4.5 hypothetical protein compare
MPMX19_01832 +0.7 3.2 hypothetical protein compare
MPMX19_04393 +0.7 2.2 hypothetical protein compare
MPMX19_05623 +0.7 3.4 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_03803 +0.7 2.5 hypothetical protein compare
MPMX19_00191 +0.7 2.9 hypothetical protein compare
MPMX19_01217 +0.7 2.3 Ribosomal RNA small subunit methyltransferase C compare
MPMX19_02466 +0.7 2.1 Octopine permease ATP-binding protein P compare
MPMX19_04700 +0.7 2.9 Adaptive-response sensory-kinase SasA compare
MPMX19_04644 +0.7 1.5 hypothetical protein compare
MPMX19_01955 +0.7 1.0 Putative anti-sigma factor antagonist compare
MPMX19_04759 +0.7 2.0 HTH-type transcriptional regulator LutR compare
MPMX19_05906 +0.7 1.4 hypothetical protein compare
MPMX19_04508 +0.7 2.8 Phosphoglycolate phosphatase compare
MPMX19_05748 +0.6 2.1 Response regulator SaeR compare
MPMX19_06874 +0.6 2.2 hypothetical protein compare
MPMX19_02804 +0.6 1.6 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial compare
MPMX19_06896 +0.6 1.8 L-aspartate oxidase compare
MPMX19_04240 +0.6 1.8 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_05043 +0.6 3.4 hypothetical protein compare
MPMX19_03491 +0.6 2.3 putative FAD-linked oxidoreductase compare
MPMX19_05534 +0.6 1.2 DNA gyrase inhibitor YacG compare
MPMX19_01719 +0.6 1.4 Putative fluoride ion transporter CrcB compare
MPMX19_05470 +0.6 2.4 hypothetical protein compare
MPMX19_05850 +0.6 1.4 hypothetical protein compare
MPMX19_00825 +0.6 3.1 hypothetical protein compare
MPMX19_00544 +0.6 1.2 hypothetical protein compare
MPMX19_03613 +0.6 2.1 N-acetylglucosamine-6-phosphate deacetylase compare
MPMX19_00689 +0.6 1.7 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
MPMX19_03915 +0.6 1.8 hypothetical protein compare
MPMX19_05203 +0.6 2.1 hypothetical protein compare
MPMX19_00860 +0.6 1.2 hypothetical protein compare
MPMX19_02424 +0.6 2.1 hypothetical protein compare
MPMX19_05352 +0.6 1.4 putative cysteine-rich protein YhjQ compare
MPMX19_05921 +0.6 1.7 hypothetical protein compare
MPMX19_06506 +0.6 1.5 hypothetical protein compare
MPMX19_00370 +0.6 1.8 hypothetical protein compare
MPMX19_05014 +0.6 1.6 Cytochrome c1 compare
MPMX19_02251 +0.6 1.3 hypothetical protein compare
MPMX19_02502 +0.5 2.6 hypothetical protein compare
MPMX19_00208 +0.5 1.4 hypothetical protein compare
MPMX19_05314 +0.5 1.7 hypothetical protein compare
MPMX19_05176 +0.5 1.5 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase compare
MPMX19_06340 +0.5 2.4 hypothetical protein compare
MPMX19_03724 +0.5 1.3 hypothetical protein compare
MPMX19_00244 +0.5 2.1 hypothetical protein compare
MPMX19_05205 +0.5 1.9 hypothetical protein compare
MPMX19_02659 +0.5 2.5 Undecaprenyl-diphosphatase compare
MPMX19_04726 +0.5 1.9 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_02198 +0.5 2.1 hypothetical protein compare
MPMX19_03075 +0.5 2.7 hypothetical protein compare
MPMX19_00207 +0.5 2.6 hypothetical protein compare
MPMX19_04280 +0.5 1.7 hypothetical protein compare
MPMX19_04647 +0.5 1.3 hypothetical protein compare
MPMX19_04225 +0.5 2.5 hypothetical protein compare
MPMX19_06420 +0.5 1.5 hypothetical protein compare
MPMX19_01748 +0.5 1.3 hypothetical protein compare
MPMX19_04246 +0.5 1.9 hypothetical protein compare
MPMX19_05202 +0.5 1.6 Tryptophan synthase beta chain compare
MPMX19_00872 +0.5 1.2 hypothetical protein compare
MPMX19_00036 +0.5 2.0 hypothetical protein compare
MPMX19_02084 +0.5 1.2 hypothetical protein compare
MPMX19_04094 +0.5 3.2 Flagellar M-ring protein compare
MPMX19_06765 +0.5 1.4 Hydrogen peroxide-inducible genes activator compare
MPMX19_00427 +0.5 1.4 hypothetical protein compare
MPMX19_03527 +0.5 2.1 hypothetical protein compare
MPMX19_06759 +0.5 1.6 Taurine import ATP-binding protein TauB compare
MPMX19_02875 +0.5 1.5 hypothetical protein compare
MPMX19_04743 +0.5 1.8 Formyltransferase/hydrolase complex subunit D compare
MPMX19_01480 +0.5 2.5 hypothetical protein compare
MPMX19_05606 +0.5 1.5 hypothetical protein compare
MPMX19_02348 +0.5 0.8 hypothetical protein compare
MPMX19_05282 +0.5 1.6 1,3,6,8-tetrahydroxynaphthalene synthase compare
MPMX19_03963 +0.5 2.5 hypothetical protein compare
MPMX19_00864 +0.5 1.5 Flagellar hook-basal body complex protein FliE compare
MPMX19_06917 +0.5 1.8 HTH-type transcriptional regulator PgrR compare
MPMX19_01629 +0.5 3.2 hypothetical protein compare
MPMX19_04693 +0.5 2.4 hypothetical protein compare
MPMX19_03868 +0.5 1.8 Xylitol-binding protein compare
MPMX19_04986 +0.5 1.3 hypothetical protein compare
MPMX19_06486 +0.5 1.8 Phenylacetate-coenzyme A ligase compare
MPMX19_03340 +0.5 1.2 hypothetical protein compare
MPMX19_00764 +0.5 1.3 ECF RNA polymerase sigma factor EcfG compare
MPMX19_04051 +0.5 2.0 Alcohol dehydrogenase compare
MPMX19_01426 +0.5 1.0 hypothetical protein compare
MPMX19_01128 +0.5 2.2 hypothetical protein compare
MPMX19_06661 +0.5 2.2 hypothetical protein compare
MPMX19_05295 +0.5 1.0 hypothetical protein compare
MPMX19_00212 +0.5 3.7 Nitrogen fixation regulation protein FixK compare
MPMX19_05862 +0.4 2.1 3-carboxy-cis,cis-muconate cycloisomerase compare
MPMX19_01875 +0.4 1.7 hypothetical protein compare
MPMX19_02310 +0.4 1.6 hypothetical protein compare
MPMX19_05178 +0.4 2.2 Alkanesulfonate monooxygenase compare
MPMX19_00887 +0.4 1.1 hypothetical protein compare
MPMX19_03699 +0.4 1.6 Maltose/maltodextrin import ATP-binding protein MalK compare
MPMX19_02608 +0.4 1.9 hypothetical protein compare
MPMX19_06390 +0.4 1.9 hypothetical protein compare
MPMX19_02041 +0.4 1.4 Protein YciI compare
MPMX19_06471 +0.4 2.0 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_03374 +0.4 2.3 Alpha-hemolysin translocation ATP-binding protein HlyB compare
MPMX19_05726 +0.4 1.2 hypothetical protein compare
MPMX19_01704 +0.4 1.3 hypothetical protein compare
MPMX19_03655 +0.4 0.8 hypothetical protein compare
MPMX19_00580 +0.4 1.7 hypothetical protein compare
MPMX19_04597 +0.4 2.1 Adaptive-response sensory-kinase SasA compare
MPMX19_03509 +0.4 1.6 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic compare
MPMX19_04133 +0.4 2.9 Transcriptional regulatory protein tctD compare
MPMX19_06350 +0.4 2.3 Arsenical-resistance protein Acr3 compare
MPMX19_04993 +0.4 2.4 Gluconate 5-dehydrogenase compare
MPMX19_01757 +0.4 1.9 Ferredoxin--NADP reductase compare
MPMX19_02393 +0.4 2.0 hypothetical protein compare
MPMX19_02817 +0.4 0.8 Serine 3-dehydrogenase compare
MPMX19_06815 +0.4 1.5 hypothetical protein compare
MPMX19_06313 +0.4 1.7 hypothetical protein compare
MPMX19_04826 +0.4 1.5 hypothetical protein compare
MPMX19_02931 +0.4 1.5 Linearmycin resistance ATP-binding protein LnrL compare
MPMX19_00044 +0.4 1.6 hypothetical protein compare
MPMX19_05575 +0.4 1.2 hypothetical protein compare
MPMX19_05702 +0.4 2.1 Ethanolamine ammonia-lyase light chain compare
MPMX19_04484 +0.4 1.7 2-iminobutanoate/2-iminopropanoate deaminase compare
MPMX19_03308 +0.4 1.7 hypothetical protein compare
MPMX19_05231 +0.4 1.8 1,2-epoxyphenylacetyl-CoA isomerase compare
MPMX19_03582 +0.4 1.6 Response regulator protein TmoT compare
MPMX19_06355 +0.4 1.8 hypothetical protein compare
MPMX19_04205 +0.4 1.2 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_02034 +0.4 1.7 Peptidoglycan-associated lipoprotein compare
MPMX19_06492 +0.4 1.7 IS5 family transposase ISAzs10 compare
MPMX19_03262 +0.4 1.2 putative HTH-type transcriptional repressor ExuR compare
MPMX19_00094 +0.4 1.1 hypothetical protein compare
MPMX19_02094 +0.4 1.6 hypothetical protein compare
MPMX19_04727 +0.4 1.8 hypothetical protein compare
MPMX19_04332 +0.4 2.0 hypothetical protein compare
MPMX19_05786 +0.4 1.4 HTH-type transcriptional repressor RspR compare
MPMX19_03575 +0.4 1.2 HTH-type transcriptional regulator NimR compare
MPMX19_00775 +0.4 1.7 hypothetical protein compare
MPMX19_02248 +0.4 1.5 hypothetical protein compare
MPMX19_06526 +0.4 1.6 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_05559 +0.4 2.1 hypothetical protein compare
MPMX19_06196 +0.4 2.0 Flagellum-specific ATP synthase compare
MPMX19_00545 +0.4 2.2 hypothetical protein compare
MPMX19_06862 +0.4 0.7 hypothetical protein compare
MPMX19_03001 +0.4 1.2 Ribulokinase compare
MPMX19_06888 +0.4 1.5 hypothetical protein compare
MPMX19_02987 +0.4 1.0 hypothetical protein compare
MPMX19_06856 +0.4 2.3 Riboflavin transporter compare
MPMX19_00068 +0.4 2.0 hypothetical protein compare
MPMX19_01790 +0.4 1.3 Urease subunit gamma 1 compare
MPMX19_05328 +0.4 1.4 hypothetical protein compare
MPMX19_04599 +0.4 2.6 Inner membrane transport permease YadH compare
MPMX19_01858 +0.4 2.2 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP compare
MPMX19_00766 +0.4 0.8 hypothetical protein compare
MPMX19_05903 +0.4 2.3 hypothetical protein compare
MPMX19_00875 +0.4 1.5 hypothetical protein compare
MPMX19_00663 +0.4 1.1 hypothetical protein compare
MPMX19_06078 +0.4 2.4 Putative amino-acid ABC transporter-binding protein YhdW compare
MPMX19_03305 +0.4 1.4 L-fucose mutarotase compare
MPMX19_06817 +0.4 1.3 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_06581 +0.4 2.2 3-oxoacyl-[acyl-carrier-protein] synthase 3 protein 2 compare
MPMX19_02747 +0.4 2.4 hypothetical protein compare
MPMX19_00852 +0.4 1.0 hypothetical protein compare
MPMX19_04682 +0.4 0.8 hypothetical protein compare
MPMX19_03786 +0.4 1.2 hypothetical protein compare
MPMX19_04734 +0.4 1.3 5,6,7,8-tetrahydromethanopterin hydro-lyase compare
MPMX19_01141 +0.4 1.7 hypothetical protein compare
MPMX19_04066 +0.4 2.6 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA compare
MPMX19_01979 +0.4 1.5 hypothetical protein compare
MPMX19_04995 +0.4 1.6 D-alanine aminotransferase compare
MPMX19_05714 +0.4 2.3 hypothetical protein compare
MPMX19_06010 +0.4 2.1 hypothetical protein compare
MPMX19_00640 +0.4 2.5 L-carnitine dehydrogenase compare
MPMX19_05621 +0.4 1.9 ABC transporter ATP-binding protein NatA compare
MPMX19_04493 +0.4 1.7 PCP degradation transcriptional activation protein compare
MPMX19_06468 +0.4 2.4 Putative acyl-CoA dehydrogenase YdbM compare
MPMX19_06272 +0.4 0.6 hypothetical protein compare
MPMX19_06837 +0.4 2.4 Putrescine--pyruvate aminotransferase compare
MPMX19_01717 +0.4 1.7 Pyrophosphatase PpaX compare
MPMX19_03342 +0.4 1.1 hypothetical protein compare
MPMX19_01617 +0.4 0.7 hypothetical protein compare
MPMX19_06299 +0.4 1.6 hypothetical protein compare
MPMX19_01624 +0.4 1.7 hypothetical protein compare
MPMX19_04199 +0.4 2.2 Pseudaminic acid synthase compare
MPMX19_02043 +0.3 1.9 hypothetical protein compare
MPMX19_02062 +0.3 1.5 Maleylpyruvate isomerase compare
MPMX19_04559 +0.3 1.9 hypothetical protein compare
MPMX19_04863 +0.3 0.9 Transcriptional regulatory protein LnrK compare
MPMX19_01283 +0.3 1.2 hypothetical protein compare
MPMX19_06872 +0.3 1.6 Short-chain-enoyl-CoA hydratase compare
MPMX19_03462 +0.3 1.4 Acetate CoA-transferase subunit alpha compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm experiments