Experiment set1S259 for Sphingobium sp. HT1-2

Compare to:

EMM_noCarbon with D-Glucose and Ammonium Sulfate

200 most important genes:

  gene name fitness t score description  
GFF4800 -5.2 -5.0 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF3305 -4.6 -6.4 Histidinol-phosphatase [alternative form] (EC 3.1.3.15) compare
GFF1625 -4.6 -12.3 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF3061 -4.6 -8.9 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
GFF2628 -4.6 -8.3 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF963 -4.6 -7.6 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
GFF3241 -4.5 -9.2 Histidinol dehydrogenase (EC 1.1.1.23) compare
GFF2056 -4.5 -10.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF3060 -4.5 -8.6 Imidazole glycerol phosphate synthase amidotransferase subunit HisH compare
GFF3455 -4.5 -14.3 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF3440 -4.5 -8.6 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF5413 -4.4 -5.2 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF2404 -4.4 -12.6 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) compare
GFF814 -4.4 -13.2 Adenylosuccinate synthetase (EC 6.3.4.4) compare
GFF2630 -4.4 -18.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF3458 -4.4 -14.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF3538 -4.3 -15.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF2481 -4.3 -10.1 Prephenate dehydratase (EC 4.2.1.51) compare
GFF3537 -4.3 -11.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF2370 -4.3 -15.4 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF877 -4.3 -4.2 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis compare
GFF2060 -4.3 -17.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
GFF2468 -4.3 -9.1 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF1891 -4.3 -12.6 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF826 -4.3 -5.1 Cobalamin synthase (EC 2.7.8.26) compare
GFF2057 -4.3 -15.5 Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86) compare
GFF816 -4.3 -13.4 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
GFF4169 -4.2 -2.9 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF500 -4.2 -7.1 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
GFF3334 -4.2 -2.9 Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) compare
GFF1424 -4.2 -15.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
GFF2270 -4.2 -9.8 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
GFF1627 -4.2 -5.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF633 -4.2 -17.0 Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF952 -4.2 -13.7 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
GFF3770 -4.2 -2.9 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54) compare
GFF803 -4.2 -4.1 Chorismate synthase (EC 4.2.3.5) compare
GFF765 -4.2 -23.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF3322 -4.1 -14.7 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
GFF2789 -4.1 -11.0 N-acetylglutamate kinase (EC 2.7.2.8) compare
GFF3062 -4.1 -13.3 Imidazole glycerol phosphate synthase cyclase subunit compare
GFF1490 -4.1 -12.4 Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) compare
GFF215 -4.1 -16.5 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), C-terminal domain compare
GFF216 -4.1 -8.8 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain compare
GFF879 -4.1 -8.3 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
GFF3534 -4.1 -12.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF4764 -4.1 -16.5 Threonine synthase (EC 4.2.3.1) compare
GFF3336 -4.1 -2.8 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) compare
GFF79 -4.1 -10.5 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF1454 -4.1 -2.8 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF2054 -4.1 -18.9 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF1593 -4.0 -3.9 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF1909 -4.0 -12.4 Chorismate mutase I (EC 5.4.99.5) compare
GFF217 -4.0 -11.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
GFF1583 -4.0 -2.8 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type compare
GFF1592 -4.0 -6.1 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF403 -4.0 -14.0 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF878 -4.0 -12.2 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) compare
GFF828 -4.0 -6.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
GFF3439 -4.0 -4.7 Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) compare
GFF763 -4.0 -14.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF3058 -3.9 -12.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
GFF2052 -3.9 -6.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF3697 -3.9 -15.5 Argininosuccinate synthase (EC 6.3.4.5) compare
GFF66 -3.9 -7.5 Cobyric acid synthase (EC 6.3.5.10) compare
GFF3277 -3.9 -15.6 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
GFF1626 -3.8 -4.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF1299 -3.8 -5.2 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF824 -3.8 -6.3 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
GFF4190 -3.8 -6.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF2132 -3.8 -16.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
GFF2893 -3.8 -16.6 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF825 -3.7 -7.1 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
GFF1972 -3.7 -10.7 Homoserine kinase (EC 2.7.1.39) compare
GFF1668 -3.7 -9.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
GFF1300 -3.7 -9.2 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF823 -3.6 -7.7 Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
GFF3793 -3.6 -12.6 Argininosuccinate lyase (EC 4.3.2.1) compare
GFF1053 -3.6 -14.1 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF818 -3.6 -8.7 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF3929 -3.6 -3.5 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF1853 -3.6 -8.3 Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133) compare
GFF2076 -3.6 -3.5 Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1) compare
GFF3746 -3.5 -10.2 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
GFF3242 -3.5 -9.4 ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs compare
GFF2077 -3.5 -3.4 Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1) compare
GFF142 -3.5 -20.5 Polyhydroxyalkanoic acid synthase compare
GFF645 -3.5 -21.6 Polyhydroxyalkanoic acid synthase compare
GFF1851 -3.4 -9.0 Precorrin-6A synthase (deacetylating) (EC 2.1.1.152) compare
GFF2079 -3.4 -6.0 Enolase (EC 4.2.1.11) compare
GFF3064 -3.4 -8.4 Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
GFF1852 -3.4 -10.7 Hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing) (EC 6.3.5.9) compare
GFF3795 -3.3 -12.1 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF1856 -3.3 -10.3 Precorrin-6A reductase (EC 1.3.1.54) compare
GFF1858 -3.3 -5.9 Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) compare
GFF2131 -3.3 -15.8 Phosphoglycerate kinase (EC 2.7.2.3) compare
GFF2491 -3.2 -8.5 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF1594 -3.2 -5.7 Glucokinase (EC 2.7.1.2) compare
GFF3931 -3.0 -8.5 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF1855 -3.0 -10.8 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132) compare
GFF1857 -3.0 -8.7 Precorrin-3B C(17)-methyltransferase (EC 2.1.1.131) compare
GFF1860 -2.9 -11.7 Precorrin-3B synthase compare
GFF1559 -2.7 -3.7 LSU ribosomal protein L9p compare
GFF1859 -2.6 -7.1 Precorrin-8X methylmutase (EC 5.4.99.61) compare
GFF234 -2.6 -3.8 hypothetical protein compare
GFF3783 -2.5 -12.3 L-aspartate oxidase (EC 1.4.3.16) compare
GFF2369 -2.3 -12.2 hypothetical protein compare
GFF4076 -2.3 -7.4 Two-component transcriptional response regulator, LuxR family compare
GFF4947 -2.3 -13.1 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) compare
GFF3434 -2.3 -4.1 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF246 -2.3 -9.5 Quinolinate synthetase (EC 2.5.1.72) compare
GFF2890 -2.3 -3.9 PKHD-type hydroxylase YbiX compare
GFF1679 -2.2 -11.2 Cysteine desulfurase (EC 2.8.1.7) compare
GFF2034 -2.2 -11.6 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
GFF3059 -2.1 -5.6 hypothetical protein compare
GFF1618 -2.1 -2.8 Transcriptional regulator, AsnC family compare
GFF243 -2.1 -8.2 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
GFF1854 -2.1 -5.2 Cobalamin biosynthesis protein CobE compare
GFF2137 -2.0 -7.1 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF4953 -2.0 -3.3 FIG006611: nucleotidyltransferase compare
GFF804 -2.0 -6.7 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) compare
GFF827 -2.0 -6.3 'Alpha-ribazole-5'-phosphate phosphatase' transl_table=11 compare
GFF1923 -1.8 -10.3 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
GFF2416 -1.7 -4.3 Site-specific tyrosine recombinase XerD compare
GFF2254 -1.7 -5.2 DksA family protein PA5536 (no Zn-finger) compare
GFF2900 -1.7 -3.0 HflK protein compare
GFF3323 -1.7 -8.1 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) compare
GFF233 -1.7 -10.4 'Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II' transl_table=11 compare
GFF1920 -1.6 -10.6 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) compare
GFF4211 -1.5 -2.5 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) compare
GFF1099 -1.5 -3.3 Type IV secretory pathway, VirD2 components (relaxase) compare
GFF2269 -1.5 -6.6 NLP/P60 family lipoprotein compare
GFF120 -1.5 -9.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF2891 -1.4 -2.5 putative TonB-dependent receptor compare
GFF644 -1.4 -4.7 hypothetical protein compare
GFF4760 -1.4 -3.5 tRNA-modifying protein YgfZ compare
GFF1921 -1.3 -8.5 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) compare
GFF1651 -1.3 -9.8 Inner membrane protein, KefB/KefC family compare
GFF646 -1.2 -7.7 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF2053 -1.2 -3.8 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF5252 -1.2 -3.6 Prevent host death protein, Phd antitoxin compare
GFF5078 -1.2 -3.2 hypothetical protein compare
GFF5255 -1.2 -6.0 Mobilization protein MobA @ Conjugal transfer protein TraA compare
GFF2787 -1.2 -3.4 Cell division integral membrane protein, YggT and half-length relatives compare
GFF1462 -1.1 -1.3 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF3428 -1.1 -2.0 hypothetical protein compare
GFF4075 -1.1 -7.4 Two-component system sensor histidine kinase compare
GFF5 -1.1 -2.1 DNA-binding protein compare
GFF4964 -1.1 -7.8 Hydrolase, alpha/beta fold family compare
GFF3818 -1.0 -3.9 Phosphocarrier protein, nitrogen regulation associated compare
GFF516 -1.0 -3.0 hypothetical protein compare
GFF4050 -1.0 -3.2 Cell division trigger factor (EC 5.2.1.8) compare
GFF3217 -1.0 -4.0 hypothetical protein compare
GFF3082 -1.0 -3.2 hypothetical protein compare
GFF2356 -1.0 -1.9 COG2740: Predicted nucleic-acid-binding protein implicated in transcription termination / Ribosomal protein L7Ae family protein YlxQ compare
GFF3291 -1.0 -6.4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF831 -1.0 -3.4 hypothetical protein compare
GFF5248 -1.0 -3.8 hypothetical protein compare
GFF5247 -1.0 -7.2 hypothetical protein compare
GFF4915 -0.9 -6.3 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF2036 -0.9 -6.7 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
GFF2311 -0.9 -1.4 Transcriptional regulator, GntR family compare
GFF2754 -0.9 -4.7 hypothetical protein compare
GFF3601 -0.9 -3.2 hypothetical protein compare
GFF499 -0.9 -3.4 hypothetical protein compare
GFF5241 -0.9 -4.7 Transcriptional regulator, AcrR family compare
GFF3569 -0.9 -3.2 hypothetical protein compare
GFF5056 -0.9 -6.2 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF5249 -0.9 -2.3 hypothetical protein compare
GFF4103 -0.9 -2.0 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF4570 -0.9 -1.8 hypothetical protein compare
GFF492 -0.9 -2.3 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF132 -0.9 -2.4 Methylmalonyl-CoA mutase (EC 5.4.99.2) / B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2) compare
GFF4916 -0.8 -6.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
GFF2467 -0.8 -4.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) / YjbR family protein compare
GFF821 -0.8 -4.6 'Pyridoxal-5'-phosphate phosphatase (EC 3.1.3.74), Alphaproteobacterial type' transl_table=11 compare
GFF5093 -0.8 -4.5 hypothetical protein compare
GFF2913 -0.8 -1.3 hypothetical protein compare
GFF4170 -0.8 -5.1 Maf-like protein compare
GFF3564 -0.8 -2.2 hypothetical protein compare
GFF4234 -0.8 -5.8 hypothetical protein compare
GFF4777 -0.8 -5.4 Signal peptidase I (EC 3.4.21.89) compare
GFF60 -0.8 -6.5 Pyruvate,phosphate dikinase (EC 2.7.9.1) compare
GFF659 -0.8 -3.3 Phosphohistidine phosphatase SixA compare
GFF5254 -0.8 -3.7 Mobilization protein compare
GFF951 -0.8 -4.1 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) compare
GFF131 -0.8 -2.5 Methylmalonyl-CoA epimerase (EC 5.1.99.1) @ Ethylmalonyl-CoA epimerase compare
GFF5251 -0.8 -2.5 Death on curing protein, Doc toxin compare
GFF3927 -0.8 -2.2 hypothetical protein compare
GFF4235 -0.8 -4.4 hypothetical protein compare
GFF817 -0.8 -2.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF1460 -0.7 -3.0 glycoside hydrolase, family 25 compare
GFF350 -0.7 -3.5 Capsular polysaccharide glycosyltransferase biosynthesis protein WcbB compare
GFF4763 -0.7 -4.5 SAM-dependent methyltransferase compare
GFF3573 -0.7 -2.5 hypothetical protein compare
GFF4165 -0.7 -3.2 PTS IIA-like nitrogen-regulatory protein PtsN compare
GFF949 -0.7 -3.4 hypothetical protein compare
GFF3693 -0.7 -3.0 hypothetical protein compare
GFF764 -0.7 -3.0 hypothetical protein compare
GFF348 -0.7 -3.3 Capsular polysaccharide export system protein KpsS compare


Specific Phenotypes

None in this experiment

For Sphingobium sp. HT1-2 in carbon and nitrogen source experiments

For carbon and nitrogen source D-Glucose across organisms