Experiment set1S258 for Sphingobium sp. HT1-2

Compare to:

EMM_noCarbon with D-Glucose and Ammonium Sulfate

200 most important genes:

  gene name fitness t score description  
GFF4800 -5.2 -5.1 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF217 -4.6 -10.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
GFF2481 -4.5 -10.5 Prephenate dehydratase (EC 4.2.1.51) compare
GFF3061 -4.5 -10.4 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
GFF3322 -4.5 -13.7 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
GFF3241 -4.4 -10.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
GFF1668 -4.3 -7.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
GFF3060 -4.3 -9.3 Imidazole glycerol phosphate synthase amidotransferase subunit HisH compare
GFF1424 -4.3 -16.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
GFF4169 -4.3 -3.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF3334 -4.3 -3.0 Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) compare
GFF3770 -4.3 -3.0 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54) compare
GFF215 -4.3 -16.8 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), C-terminal domain compare
GFF952 -4.3 -13.7 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
GFF3929 -4.3 -2.9 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF3746 -4.2 -8.6 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
GFF3455 -4.2 -15.8 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF2056 -4.2 -12.1 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF3062 -4.2 -13.2 Imidazole glycerol phosphate synthase cyclase subunit compare
GFF3305 -4.2 -10.1 Histidinol-phosphatase [alternative form] (EC 3.1.3.15) compare
GFF3336 -4.2 -2.9 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) compare
GFF633 -4.2 -18.0 Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF963 -4.2 -13.1 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
GFF814 -4.1 -15.4 Adenylosuccinate synthetase (EC 6.3.4.4) compare
GFF2370 -4.1 -16.8 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF2468 -4.1 -10.3 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF2789 -4.1 -12.0 N-acetylglutamate kinase (EC 2.7.2.8) compare
GFF826 -4.1 -7.3 Cobalamin synthase (EC 2.7.8.26) compare
GFF5413 -4.1 -6.2 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF3277 -4.1 -15.3 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
GFF3458 -4.1 -15.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF2054 -4.0 -19.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF816 -4.0 -14.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
GFF2057 -4.0 -17.0 Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86) compare
GFF3534 -4.0 -13.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF4764 -4.0 -16.4 Threonine synthase (EC 4.2.3.1) compare
GFF2491 -4.0 -7.2 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF1625 -4.0 -16.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF2628 -3.9 -11.3 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF818 -3.9 -8.8 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF1626 -3.9 -4.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF3538 -3.9 -17.2 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF823 -3.9 -7.0 Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
GFF3058 -3.9 -12.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
GFF2060 -3.9 -19.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
GFF763 -3.9 -15.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF1891 -3.9 -14.4 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF3439 -3.9 -5.3 Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) compare
GFF1627 -3.9 -7.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF3793 -3.9 -12.9 Argininosuccinate lyase (EC 4.3.2.1) compare
GFF1592 -3.9 -6.9 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF765 -3.9 -25.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF879 -3.8 -9.9 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
GFF3697 -3.8 -16.5 Argininosuccinate synthase (EC 6.3.4.5) compare
GFF1454 -3.8 -4.6 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF825 -3.8 -8.1 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
GFF2052 -3.8 -7.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF216 -3.8 -11.4 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain compare
GFF1909 -3.8 -12.6 Chorismate mutase I (EC 5.4.99.5) compare
GFF3440 -3.8 -10.8 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF3795 -3.8 -11.1 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF1490 -3.8 -15.0 Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) compare
GFF1972 -3.7 -11.3 Homoserine kinase (EC 2.7.1.39) compare
GFF828 -3.7 -7.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
GFF824 -3.7 -7.2 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
GFF2270 -3.7 -11.9 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
GFF803 -3.7 -7.8 Chorismate synthase (EC 4.2.3.5) compare
GFF1855 -3.7 -10.0 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132) compare
GFF2404 -3.7 -16.7 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) compare
GFF3537 -3.7 -14.1 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF2076 -3.6 -3.5 Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1) compare
GFF877 -3.6 -7.7 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis compare
GFF878 -3.6 -15.2 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) compare
GFF79 -3.6 -12.6 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF403 -3.6 -15.2 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF1053 -3.6 -14.9 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF1299 -3.5 -5.8 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF1859 -3.5 -7.1 Precorrin-8X methylmutase (EC 5.4.99.61) compare
GFF2630 -3.5 -21.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF66 -3.5 -10.4 Cobyric acid synthase (EC 6.3.5.10) compare
GFF3242 -3.4 -9.6 ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs compare
GFF1858 -3.4 -6.1 Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) compare
GFF500 -3.4 -9.3 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
GFF3434 -3.4 -4.6 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF1583 -3.4 -4.0 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type compare
GFF2132 -3.3 -17.0 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
GFF4190 -3.3 -8.7 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF2077 -3.3 -3.9 Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1) compare
GFF1853 -3.3 -10.0 Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133) compare
GFF1851 -3.2 -10.1 Precorrin-6A synthase (deacetylating) (EC 2.1.1.152) compare
GFF1300 -3.2 -10.8 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF1852 -3.1 -11.5 Hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing) (EC 6.3.5.9) compare
GFF3064 -3.1 -8.4 Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
GFF2079 -3.0 -6.9 Enolase (EC 4.2.1.11) compare
GFF645 -3.0 -20.3 Polyhydroxyalkanoic acid synthase compare
GFF4953 -3.0 -4.9 FIG006611: nucleotidyltransferase compare
GFF3931 -2.9 -9.3 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF1593 -2.9 -6.1 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF1856 -2.9 -10.9 Precorrin-6A reductase (EC 1.3.1.54) compare
GFF2131 -2.8 -15.2 Phosphoglycerate kinase (EC 2.7.2.3) compare
GFF142 -2.8 -17.4 Polyhydroxyalkanoic acid synthase compare
GFF1857 -2.7 -8.9 Precorrin-3B C(17)-methyltransferase (EC 2.1.1.131) compare
GFF2893 -2.6 -11.8 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF1860 -2.6 -11.0 Precorrin-3B synthase compare
GFF2137 -2.5 -8.3 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF1594 -2.5 -5.3 Glucokinase (EC 2.7.1.2) compare
GFF1679 -2.5 -12.6 Cysteine desulfurase (EC 2.8.1.7) compare
GFF1854 -2.5 -6.5 Cobalamin biosynthesis protein CobE compare
GFF3579 -2.3 -3.5 hypothetical protein compare
GFF4076 -2.3 -7.5 Two-component transcriptional response regulator, LuxR family compare
GFF3783 -2.2 -11.3 L-aspartate oxidase (EC 1.4.3.16) compare
GFF2034 -2.2 -11.5 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
GFF243 -2.2 -9.0 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
GFF2753 -2.1 -5.0 hypothetical protein compare
GFF1559 -2.0 -2.9 LSU ribosomal protein L9p compare
GFF246 -1.9 -8.3 Quinolinate synthetase (EC 2.5.1.72) compare
GFF2369 -1.9 -10.1 hypothetical protein compare
GFF1462 -1.9 -2.4 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF3059 -1.9 -6.0 hypothetical protein compare
GFF804 -1.9 -6.3 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) compare
GFF1922 -1.8 -5.2 Glycine cleavage system H protein compare
GFF1920 -1.8 -11.4 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) compare
GFF2269 -1.7 -7.7 NLP/P60 family lipoprotein compare
GFF234 -1.6 -2.6 hypothetical protein compare
GFF4760 -1.6 -3.7 tRNA-modifying protein YgfZ compare
GFF5252 -1.5 -3.6 Prevent host death protein, Phd antitoxin compare
GFF3890 -1.5 -2.7 Agmatine deiminase (EC 3.5.3.12) compare
GFF1921 -1.5 -9.1 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) compare
GFF4947 -1.4 -9.7 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) compare
GFF4769 -1.4 -2.8 putative cox locus protein compare
GFF827 -1.4 -4.3 'Alpha-ribazole-5'-phosphate phosphatase' transl_table=11 compare
GFF3927 -1.3 -3.3 hypothetical protein compare
GFF1923 -1.3 -8.0 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
GFF4170 -1.3 -7.2 Maf-like protein compare
GFF2890 -1.3 -3.3 PKHD-type hydroxylase YbiX compare
GFF5355 -1.3 -2.4 hypothetical protein compare
GFF2418 -1.3 -1.7 hypothetical protein compare
GFF1651 -1.3 -9.1 Inner membrane protein, KefB/KefC family compare
GFF817 -1.3 -3.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF120 -1.2 -7.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF3569 -1.2 -4.0 hypothetical protein compare
GFF132 -1.2 -2.6 Methylmalonyl-CoA mutase (EC 5.4.99.2) / B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2) compare
GFF1439 -1.1 -2.3 hypothetical protein compare
GFF1533 -1.1 -3.9 Ferrichrome-iron receptor compare
GFF3428 -1.1 -2.3 hypothetical protein compare
GFF5254 -1.0 -4.4 Mobilization protein compare
GFF5247 -1.0 -7.9 hypothetical protein compare
GFF646 -1.0 -6.9 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF4024 -1.0 -2.7 hypothetical protein compare
GFF1521 -1.0 -2.1 hypothetical protein compare
GFF233 -1.0 -6.7 'Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II' transl_table=11 compare
GFF2901 -1.0 -1.7 HflC protein compare
GFF251 -1.0 -4.1 Site-specific tyrosine recombinase XerC compare
GFF2416 -1.0 -3.1 Site-specific tyrosine recombinase XerD compare
GFF5 -1.0 -1.4 DNA-binding protein compare
GFF5255 -1.0 -5.7 Mobilization protein MobA @ Conjugal transfer protein TraA compare
GFF5330 -0.9 -2.3 Mobile element protein compare
GFF764 -0.9 -3.7 hypothetical protein compare
GFF1618 -0.9 -1.4 Transcriptional regulator, AsnC family compare
GFF3818 -0.9 -3.1 Phosphocarrier protein, nitrogen regulation associated compare
GFF4773 -0.9 -3.0 hypothetical protein compare
GFF4075 -0.9 -6.1 Two-component system sensor histidine kinase compare
GFF3030 -0.9 -2.4 hypothetical protein compare
GFF5056 -0.9 -6.0 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF2256 -0.9 -1.6 hypothetical protein compare
GFF3233 -0.9 -1.2 hypothetical protein compare
GFF2053 -0.9 -3.3 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF4063 -0.8 -4.6 Mov34/MPN/PAD-1 family protease compare
GFF180 -0.8 -3.7 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF2179 -0.8 -2.3 hypothetical protein compare
GFF571 -0.8 -1.5 hypothetical protein compare
GFF4964 -0.8 -6.2 Hydrolase, alpha/beta fold family compare
GFF3291 -0.8 -5.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF3564 -0.8 -2.7 hypothetical protein compare
GFF1574 -0.8 -4.1 FolM Alternative dihydrofolate reductase 1 compare
GFF2254 -0.8 -2.3 DksA family protein PA5536 (no Zn-finger) compare
GFF3120 -0.8 -1.8 RecA protein compare
GFF5249 -0.8 -2.2 hypothetical protein compare
GFF3573 -0.8 -2.5 hypothetical protein compare
GFF2489 -0.8 -1.0 hypothetical protein compare
GFF141 -0.8 -5.0 Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
GFF1640 -0.8 -1.2 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) compare
GFF516 -0.8 -2.1 hypothetical protein compare
GFF2467 -0.8 -4.1 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) / YjbR family protein compare
GFF2323 -0.8 -3.8 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) compare
GFF2586 -0.7 -3.5 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
GFF5410 -0.7 -4.6 hypothetical protein compare
GFF499 -0.7 -2.8 hypothetical protein compare
GFF659 -0.7 -2.5 Phosphohistidine phosphatase SixA compare
GFF4916 -0.7 -5.3 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
GFF3816 -0.7 -3.8 RNA methyltransferase Atu0341 compare
GFF5337 -0.7 -4.7 two-component system, response regulator compare
GFF4777 -0.7 -4.9 Signal peptidase I (EC 3.4.21.89) compare
GFF644 -0.7 -3.1 hypothetical protein compare
GFF821 -0.7 -4.1 'Pyridoxal-5'-phosphate phosphatase (EC 3.1.3.74), Alphaproteobacterial type' transl_table=11 compare
GFF319 -0.7 -2.3 Intracellular septation protein IspA compare
GFF184 -0.7 -3.4 Alkyl hydroperoxide reductase protein C (EC 1.11.1.15) compare
GFF5253 -0.7 -4.3 hypothetical protein compare
GFF2902 -0.7 -2.5 HtrA protease/chaperone protein compare
GFF2036 -0.7 -5.1 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare


Specific Phenotypes

None in this experiment

For Sphingobium sp. HT1-2 in carbon and nitrogen source experiments

For carbon and nitrogen source D-Glucose across organisms