Experiment set1S258 for Sphingobium sp. HT1-2

Compare to:

EMM_noCarbon with D-Glucose and Ammonium Sulfate

200 most important genes:

  gene name fitness t score description  
GFF4800 -4.9 -4.7 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF3455 -4.6 -12.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF1668 -4.6 -5.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
GFF3305 -4.6 -6.3 Histidinol-phosphatase [alternative form] (EC 3.1.3.15) compare
GFF3061 -4.5 -8.1 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
GFF217 -4.5 -9.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
GFF633 -4.5 -14.0 Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF2481 -4.5 -7.4 Prephenate dehydratase (EC 4.2.1.51) compare
GFF215 -4.4 -13.4 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), C-terminal domain compare
GFF3746 -4.4 -7.9 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
GFF963 -4.3 -10.1 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
GFF1424 -4.3 -14.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
GFF952 -4.3 -11.7 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
GFF3241 -4.3 -9.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
GFF2057 -4.2 -13.0 Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86) compare
GFF2789 -4.2 -10.2 N-acetylglutamate kinase (EC 2.7.2.8) compare
GFF4764 -4.2 -13.2 Threonine synthase (EC 4.2.3.1) compare
GFF3440 -4.2 -8.0 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF5413 -4.2 -4.0 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF2468 -4.1 -7.9 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF816 -4.1 -11.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
GFF2054 -4.1 -16.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF3458 -4.1 -13.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF2056 -4.1 -10.6 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF3697 -4.1 -13.6 Argininosuccinate synthase (EC 6.3.4.5) compare
GFF2270 -4.1 -9.9 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
GFF879 -4.1 -6.8 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
GFF2370 -4.1 -13.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF3058 -4.1 -11.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
GFF1891 -4.1 -12.5 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF763 -4.0 -11.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF3277 -4.0 -12.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
GFF5 -4.0 -2.8 DNA-binding protein compare
GFF3534 -4.0 -11.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF3439 -4.0 -4.7 Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) compare
GFF3062 -4.0 -11.2 Imidazole glycerol phosphate synthase cyclase subunit compare
GFF3322 -4.0 -13.4 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
GFF3537 -3.9 -11.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF877 -3.9 -4.7 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis compare
GFF3795 -3.9 -7.5 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF818 -3.9 -6.5 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF3060 -3.9 -8.3 Imidazole glycerol phosphate synthase amidotransferase subunit HisH compare
GFF3538 -3.9 -14.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF2628 -3.9 -9.4 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF1625 -3.9 -13.1 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF814 -3.9 -14.1 Adenylosuccinate synthetase (EC 6.3.4.4) compare
GFF765 -3.8 -22.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF3793 -3.8 -10.7 Argininosuccinate lyase (EC 4.3.2.1) compare
GFF828 -3.8 -3.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
GFF825 -3.8 -5.2 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
GFF1490 -3.8 -13.0 Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) compare
GFF1972 -3.8 -9.1 Homoserine kinase (EC 2.7.1.39) compare
GFF824 -3.8 -4.5 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
GFF500 -3.7 -6.7 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
GFF1299 -3.7 -4.6 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF1592 -3.7 -5.7 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF803 -3.7 -5.6 Chorismate synthase (EC 4.2.3.5) compare
GFF2060 -3.6 -16.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
GFF823 -3.6 -6.0 Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
GFF826 -3.6 -5.5 Cobalamin synthase (EC 2.7.8.26) compare
GFF3336 -3.6 -3.5 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) compare
GFF3242 -3.6 -6.0 ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs compare
GFF79 -3.6 -10.8 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF3770 -3.6 -2.5 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54) compare
GFF2630 -3.6 -19.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF403 -3.5 -11.9 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF2491 -3.5 -5.9 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF1909 -3.5 -7.2 Chorismate mutase I (EC 5.4.99.5) compare
GFF2052 -3.5 -3.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF2132 -3.5 -14.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
GFF1454 -3.5 -3.4 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF878 -3.5 -11.5 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) compare
GFF1053 -3.5 -12.2 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF2404 -3.4 -13.7 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) compare
GFF216 -3.4 -10.0 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain compare
GFF1626 -3.4 -4.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF4169 -3.3 -2.3 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF1583 -3.3 -2.3 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type compare
GFF66 -3.3 -7.0 Cobyric acid synthase (EC 6.3.5.10) compare
GFF1853 -3.2 -8.1 Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133) compare
GFF1452 -3.2 -2.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF4957 -3.2 -2.2 Adenosylhomocysteinase (EC 3.3.1.1) compare
GFF1594 -3.1 -3.7 Glucokinase (EC 2.7.1.2) compare
GFF3064 -3.1 -6.3 Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
GFF1627 -3.1 -8.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF1851 -3.1 -7.7 Precorrin-6A synthase (deacetylating) (EC 2.1.1.152) compare
GFF1593 -3.1 -4.7 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF1300 -3.0 -6.7 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF4190 -3.0 -5.0 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF1858 -3.0 -5.0 Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) compare
GFF3334 -3.0 -4.0 Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) compare
GFF1855 -3.0 -8.4 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132) compare
GFF645 -2.9 -18.6 Polyhydroxyalkanoic acid synthase compare
GFF2131 -2.9 -12.8 Phosphoglycerate kinase (EC 2.7.2.3) compare
GFF2137 -2.9 -7.2 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF3434 -2.9 -3.4 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF1860 -2.9 -10.2 Precorrin-3B synthase compare
GFF1859 -2.8 -5.1 Precorrin-8X methylmutase (EC 5.4.99.61) compare
GFF1856 -2.8 -8.9 Precorrin-6A reductase (EC 1.3.1.54) compare
GFF142 -2.8 -15.6 Polyhydroxyalkanoic acid synthase compare
GFF2079 -2.8 -4.6 Enolase (EC 4.2.1.11) compare
GFF4052 -2.7 -1.9 RfbJ protein compare
GFF3929 -2.6 -2.5 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2893 -2.5 -10.4 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF3233 -2.4 -2.2 hypothetical protein compare
GFF1854 -2.4 -4.3 Cobalamin biosynthesis protein CobE compare
GFF1852 -2.4 -7.7 Hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing) (EC 6.3.5.9) compare
GFF2034 -2.3 -10.3 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
GFF2077 -2.3 -3.1 Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1) compare
GFF4238 -2.3 -2.2 Capsular polysaccharide export system inner membrane protein KpsE compare
GFF3783 -2.3 -9.6 L-aspartate oxidase (EC 1.4.3.16) compare
GFF3931 -2.2 -6.9 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF1857 -2.2 -6.0 Precorrin-3B C(17)-methyltransferase (EC 2.1.1.131) compare
GFF1679 -2.2 -9.7 Cysteine desulfurase (EC 2.8.1.7) compare
GFF50 -2.1 -2.0 Phosphoglucomutase (EC 5.4.2.2) compare
GFF246 -2.0 -7.1 Quinolinate synthetase (EC 2.5.1.72) compare
GFF4076 -2.0 -5.5 Two-component transcriptional response regulator, LuxR family compare
GFF4460 -2.0 -1.8 hypothetical protein compare
GFF4769 -1.9 -2.2 putative cox locus protein compare
GFF4129 -1.9 -2.2 Chromosome (plasmid) partitioning protein ParB compare
GFF1052 -1.9 -2.2 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
GFF234 -1.9 -2.5 hypothetical protein compare
GFF243 -1.9 -6.9 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
GFF226 -1.8 -3.4 hypothetical protein compare
GFF3059 -1.8 -4.7 hypothetical protein compare
GFF4760 -1.8 -2.6 tRNA-modifying protein YgfZ compare
GFF10 -1.8 -1.4 hypothetical protein compare
GFF1584 -1.8 -1.4 hypothetical protein compare
GFF1920 -1.7 -10.2 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) compare
GFF2369 -1.7 -7.4 hypothetical protein compare
GFF2076 -1.7 -2.7 Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1) compare
GFF1922 -1.7 -5.5 Glycine cleavage system H protein compare
GFF575 -1.6 -2.8 oligopeptide transporter compare
GFF3569 -1.6 -3.8 hypothetical protein compare
GFF2890 -1.6 -2.6 PKHD-type hydroxylase YbiX compare
GFF804 -1.6 -4.3 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) compare
GFF3990 -1.6 -2.6 hypothetical protein compare
GFF4947 -1.6 -9.6 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) compare
GFF2269 -1.5 -5.7 NLP/P60 family lipoprotein compare
GFF4135 -1.5 -1.5 hypothetical protein compare
GFF2316 -1.5 -2.6 hypothetical protein compare
GFF1074 -1.5 -1.5 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF1359 -1.4 -1.1 tRNA-Lys-CTT compare
GFF1921 -1.4 -8.0 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) compare
GFF4050 -1.4 -3.6 Cell division trigger factor (EC 5.2.1.8) compare
GFF4170 -1.4 -6.4 Maf-like protein compare
GFF2254 -1.3 -2.6 DksA family protein PA5536 (no Zn-finger) compare
GFF282 -1.3 -2.4 hypothetical protein compare
GFF1453 -1.3 -1.6 Oxidoreductase probably involved in sulfite reduction compare
GFF1923 -1.3 -6.9 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
GFF1251 -1.3 -1.0 hypothetical protein compare
GFF4496 -1.3 -1.5 hypothetical protein compare
GFF1651 -1.2 -8.3 Inner membrane protein, KefB/KefC family compare
GFF2753 -1.2 -2.2 hypothetical protein compare
GFF2000 -1.2 -1.4 'Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain' transl_table=11 compare
GFF1521 -1.2 -0.9 hypothetical protein compare
GFF5254 -1.2 -4.5 Mobilization protein compare
GFF3291 -1.2 -4.9 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF120 -1.2 -7.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF4755 -1.2 -1.6 hypothetical protein compare
GFF3645 -1.2 -1.5 Transcriptional regulator, Xre family compare
GFF132 -1.2 -3.0 Methylmalonyl-CoA mutase (EC 5.4.99.2) / B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2) compare
GFF1574 -1.1 -3.6 FolM Alternative dihydrofolate reductase 1 compare
GFF5247 -1.1 -7.1 hypothetical protein compare
GFF827 -1.1 -4.0 'Alpha-ribazole-5'-phosphate phosphatase' transl_table=11 compare
GFF2877 -1.1 -2.3 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) compare
GFF4794 -1.1 -2.6 Mg/Co/Ni transporter MgtE, CBS domain-containing compare
GFF5255 -1.1 -5.0 Mobilization protein MobA @ Conjugal transfer protein TraA compare
GFF3120 -1.1 -1.7 RecA protein compare
GFF2311 -1.1 -2.4 Transcriptional regulator, GntR family compare
GFF5250 -1.1 -2.4 Replication protein compare
GFF251 -1.1 -3.7 Site-specific tyrosine recombinase XerC compare
GFF4931 -1.0 -2.5 hypothetical protein compare
GFF492 -1.0 -2.0 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF41 -1.0 -2.2 hypothetical protein compare
GFF31 -1.0 -2.3 Phage lysin (EC 3.2.1.17) # Phage lysozyme or muramidase (EC 3.2.1.17) compare
GFF2624 -1.0 -2.3 transcriptional regulator, BlaI family, putative compare
GFF48 -1.0 -1.5 GTP-binding and nucleic acid-binding protein YchF compare
GFF582 -1.0 -1.6 NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13) compare
GFF150 -1.0 -1.8 Entericidin A/B family protein compare
GFF2934 -1.0 -2.4 hypothetical protein compare
GFF348 -1.0 -3.9 Capsular polysaccharide export system protein KpsS compare
GFF4171 -1.0 -3.4 Phosphoenolpyruvate synthase regulatory protein compare
GFF4165 -1.0 -2.9 PTS IIA-like nitrogen-regulatory protein PtsN compare
GFF1439 -0.9 -2.4 hypothetical protein compare
GFF4218 -0.9 -1.4 hypothetical protein compare
GFF3406 -0.9 -3.3 hypothetical protein compare
GFF5252 -0.9 -1.3 Prevent host death protein, Phd antitoxin compare
GFF233 -0.9 -4.8 'Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II' transl_table=11 compare
GFF644 -0.9 -2.5 hypothetical protein compare
GFF679 -0.9 -1.5 hypothetical protein compare
GFF5056 -0.9 -4.9 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF1533 -0.9 -2.5 Ferrichrome-iron receptor compare
GFF2053 -0.9 -2.6 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF5249 -0.9 -1.6 hypothetical protein compare
GFF141 -0.9 -4.8 Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
GFF1764 -0.9 -2.3 Outer membrane protein A precursor compare
GFF950 -0.9 -1.0 hypothetical protein compare
GFF131 -0.9 -2.0 Methylmalonyl-CoA epimerase (EC 5.1.99.1) @ Ethylmalonyl-CoA epimerase compare
GFF3701 -0.9 -4.1 L-Proline/Glycine betaine transporter ProP compare


Specific Phenotypes

None in this experiment

For Sphingobium sp. HT1-2 in carbon and nitrogen source experiments

For carbon and nitrogen source D-Glucose across organisms