Experiment set1S257 for Sphingobium sp. HT1-2

Compare to:

EMM_noCarbon with D-Glucose and Ammonium Sulfate

200 most important genes:

  gene name fitness t score description  
GFF4800 -5.4 -5.2 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF3061 -5.0 -8.4 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
GFF816 -4.8 -12.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
GFF4764 -4.7 -15.7 Threonine synthase (EC 4.2.3.1) compare
GFF3060 -4.6 -9.8 Imidazole glycerol phosphate synthase amidotransferase subunit HisH compare
GFF215 -4.6 -16.9 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), C-terminal domain compare
GFF2057 -4.6 -16.8 Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86) compare
GFF3241 -4.5 -11.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
GFF879 -4.5 -8.2 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
GFF814 -4.5 -15.3 Adenylosuccinate synthetase (EC 6.3.4.4) compare
GFF1592 -4.5 -4.4 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF4169 -4.5 -3.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF3305 -4.5 -9.6 Histidinol-phosphatase [alternative form] (EC 3.1.3.15) compare
GFF216 -4.5 -8.6 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain compare
GFF3334 -4.5 -3.1 Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) compare
GFF3062 -4.5 -13.5 Imidazole glycerol phosphate synthase cyclase subunit compare
GFF79 -4.5 -10.8 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF3770 -4.5 -3.1 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54) compare
GFF3534 -4.5 -13.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF2054 -4.4 -20.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF2052 -4.4 -6.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF824 -4.4 -6.0 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
GFF3058 -4.4 -13.2 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
GFF2404 -4.4 -15.4 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) compare
GFF217 -4.4 -12.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
GFF3746 -4.3 -9.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
GFF2056 -4.3 -14.1 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF3277 -4.3 -15.6 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
GFF3455 -4.3 -16.8 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF2077 -4.3 -2.9 Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1) compare
GFF403 -4.2 -15.6 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF2481 -4.2 -13.0 Prephenate dehydratase (EC 4.2.1.51) compare
GFF2789 -4.2 -12.5 N-acetylglutamate kinase (EC 2.7.2.8) compare
GFF1299 -4.2 -5.8 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF1424 -4.2 -18.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
GFF3537 -4.2 -14.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF877 -4.2 -7.0 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis compare
GFF765 -4.2 -27.5 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF763 -4.2 -16.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF2060 -4.2 -19.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
GFF1626 -4.1 -4.9 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF3538 -4.1 -18.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF3697 -4.1 -17.5 Argininosuccinate synthase (EC 6.3.4.5) compare
GFF963 -4.1 -15.0 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
GFF1490 -4.1 -15.5 Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) compare
GFF3242 -4.1 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs compare
GFF3322 -4.1 -16.9 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
GFF1972 -4.0 -11.3 Homoserine kinase (EC 2.7.1.39) compare
GFF2370 -4.0 -18.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF2630 -4.0 -23.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF2628 -4.0 -12.3 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF500 -4.0 -8.9 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
GFF1858 -4.0 -5.5 Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) compare
GFF3440 -3.9 -11.8 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF633 -3.9 -20.1 Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF825 -3.9 -8.8 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
GFF3793 -3.9 -13.4 Argininosuccinate lyase (EC 4.3.2.1) compare
GFF1625 -3.9 -17.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF1454 -3.9 -5.3 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF2270 -3.9 -13.0 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
GFF1053 -3.9 -15.9 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF2468 -3.8 -12.7 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF826 -3.8 -9.5 Cobalamin synthase (EC 2.7.8.26) compare
GFF66 -3.8 -10.7 Cobyric acid synthase (EC 6.3.5.10) compare
GFF3336 -3.8 -5.2 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) compare
GFF952 -3.7 -16.5 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
GFF1594 -3.7 -6.2 Glucokinase (EC 2.7.1.2) compare
GFF803 -3.7 -8.6 Chorismate synthase (EC 4.2.3.5) compare
GFF818 -3.7 -10.1 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF1627 -3.7 -8.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF823 -3.7 -8.9 Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
GFF3439 -3.7 -6.1 Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) compare
GFF1593 -3.6 -6.0 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF1300 -3.6 -10.9 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF1891 -3.6 -16.3 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF878 -3.6 -16.8 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) compare
GFF4190 -3.6 -9.3 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF1851 -3.6 -10.3 Precorrin-6A synthase (deacetylating) (EC 2.1.1.152) compare
GFF2491 -3.6 -9.7 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF1853 -3.6 -10.2 Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133) compare
GFF5413 -3.5 -7.1 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF1852 -3.5 -12.1 Hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing) (EC 6.3.5.9) compare
GFF1857 -3.5 -9.2 Precorrin-3B C(17)-methyltransferase (EC 2.1.1.131) compare
GFF3458 -3.5 -16.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF1668 -3.4 -9.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
GFF3795 -3.4 -13.2 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF1909 -3.4 -11.1 Chorismate mutase I (EC 5.4.99.5) compare
GFF828 -3.3 -9.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
GFF1855 -3.3 -11.9 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132) compare
GFF3929 -3.2 -4.4 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF1860 -3.2 -14.2 Precorrin-3B synthase compare
GFF2893 -3.1 -14.0 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF1583 -3.1 -4.3 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type compare
GFF142 -3.0 -19.4 Polyhydroxyalkanoic acid synthase compare
GFF645 -3.0 -20.0 Polyhydroxyalkanoic acid synthase compare
GFF1854 -2.9 -7.5 Cobalamin biosynthesis protein CobE compare
GFF1856 -2.9 -11.6 Precorrin-6A reductase (EC 1.3.1.54) compare
GFF2079 -2.8 -7.6 Enolase (EC 4.2.1.11) compare
GFF2132 -2.8 -16.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
GFF3434 -2.7 -5.2 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF2137 -2.7 -9.1 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
GFF2131 -2.7 -13.5 Phosphoglycerate kinase (EC 2.7.2.3) compare
GFF1859 -2.6 -7.3 Precorrin-8X methylmutase (EC 5.4.99.61) compare
GFF3931 -2.6 -8.7 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF3783 -2.5 -12.9 L-aspartate oxidase (EC 1.4.3.16) compare
GFF3064 -2.5 -6.2 Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
GFF2034 -2.5 -13.1 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
GFF2076 -2.4 -3.4 Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1) compare
GFF1679 -2.4 -13.3 Cysteine desulfurase (EC 2.8.1.7) compare
GFF2369 -2.4 -11.6 hypothetical protein compare
GFF234 -2.4 -3.6 hypothetical protein compare
GFF243 -2.2 -8.3 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
GFF246 -1.9 -8.6 Quinolinate synthetase (EC 2.5.1.72) compare
GFF4947 -1.9 -12.7 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) compare
GFF804 -1.9 -6.3 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) compare
GFF3059 -1.8 -5.7 hypothetical protein compare
GFF2269 -1.8 -8.6 NLP/P60 family lipoprotein compare
GFF4211 -1.7 -3.0 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) compare
GFF3818 -1.7 -5.7 Phosphocarrier protein, nitrogen regulation associated compare
GFF4076 -1.7 -6.6 Two-component transcriptional response regulator, LuxR family compare
GFF1922 -1.7 -5.1 Glycine cleavage system H protein compare
GFF827 -1.6 -6.2 'Alpha-ribazole-5'-phosphate phosphatase' transl_table=11 compare
GFF4760 -1.5 -4.2 tRNA-modifying protein YgfZ compare
GFF1920 -1.5 -10.0 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) compare
GFF2254 -1.5 -4.8 DksA family protein PA5536 (no Zn-finger) compare
GFF1923 -1.5 -8.8 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
GFF120 -1.5 -9.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF1921 -1.5 -9.6 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) compare
GFF1559 -1.5 -2.0 LSU ribosomal protein L9p compare
GFF233 -1.4 -9.0 'Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II' transl_table=11 compare
GFF132 -1.3 -3.7 Methylmalonyl-CoA mutase (EC 5.4.99.2) / B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2) compare
GFF5 -1.3 -2.0 DNA-binding protein compare
GFF5251 -1.3 -3.8 Death on curing protein, Doc toxin compare
GFF719 -1.2 -2.0 hypothetical protein compare
GFF2416 -1.2 -4.1 Site-specific tyrosine recombinase XerD compare
GFF5249 -1.2 -3.1 hypothetical protein compare
GFF4953 -1.2 -2.4 FIG006611: nucleotidyltransferase compare
GFF1651 -1.2 -9.1 Inner membrane protein, KefB/KefC family compare
GFF5252 -1.2 -2.9 Prevent host death protein, Phd antitoxin compare
GFF1462 -1.2 -2.3 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF5255 -1.1 -6.5 Mobilization protein MobA @ Conjugal transfer protein TraA compare
GFF5078 -1.1 -3.1 hypothetical protein compare
GFF831 -1.1 -4.2 hypothetical protein compare
GFF3569 -1.1 -4.2 hypothetical protein compare
GFF5247 -1.1 -8.0 hypothetical protein compare
GFF659 -1.1 -4.2 Phosphohistidine phosphatase SixA compare
GFF4170 -1.0 -6.2 Maf-like protein compare
GFF2528 -1.0 -2.9 hypothetical protein compare
GFF4050 -1.0 -3.6 Cell division trigger factor (EC 5.2.1.8) compare
GFF60 -0.9 -7.8 Pyruvate,phosphate dikinase (EC 2.7.9.1) compare
GFF4200 -0.9 -1.4 Integration host factor alpha subunit compare
GFF582 -0.9 -3.0 NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13) compare
GFF4964 -0.9 -6.8 Hydrolase, alpha/beta fold family compare
GFF2469 -0.9 -3.1 hypothetical protein compare
GFF3120 -0.9 -1.8 RecA protein compare
GFF1574 -0.8 -4.2 FolM Alternative dihydrofolate reductase 1 compare
GFF4218 -0.8 -2.6 hypothetical protein compare
GFF180 -0.8 -4.1 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF646 -0.8 -5.8 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF3291 -0.8 -5.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF4075 -0.8 -6.1 Two-component system sensor histidine kinase compare
GFF4165 -0.8 -3.3 PTS IIA-like nitrogen-regulatory protein PtsN compare
GFF764 -0.8 -3.3 hypothetical protein compare
GFF2902 -0.8 -3.3 HtrA protease/chaperone protein compare
GFF5253 -0.8 -4.6 hypothetical protein compare
GFF821 -0.8 -4.6 'Pyridoxal-5'-phosphate phosphatase (EC 3.1.3.74), Alphaproteobacterial type' transl_table=11 compare
GFF644 -0.8 -2.9 hypothetical protein compare
GFF4766 -0.8 -3.9 Uncharacterized protein DUF983 associated with cytochrome c oxidase? compare
GFF5241 -0.8 -4.2 Transcriptional regulator, AcrR family compare
GFF5056 -0.8 -5.4 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF4916 -0.8 -5.7 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
GFF492 -0.8 -1.8 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF4915 -0.8 -5.2 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF600 -0.8 -1.4 Ribonuclease P protein component (EC 3.1.26.5) compare
GFF2451 -0.8 -4.4 ATPase compare
GFF4044 -0.8 -3.1 hypothetical protein compare
GFF2556 -0.8 -2.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
GFF3564 -0.8 -2.4 hypothetical protein compare
GFF4171 -0.8 -3.9 Phosphoenolpyruvate synthase regulatory protein compare
GFF3027 -0.7 -5.8 HoxN/HupN/NixA family nickel/cobalt transporter compare
GFF3428 -0.7 -1.6 hypothetical protein compare
GFF3670 -0.7 -2.8 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) compare
GFF141 -0.7 -4.8 Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
GFF5124 -0.7 -1.6 hypothetical protein compare
GFF2053 -0.7 -2.6 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF4055 -0.7 -1.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF4814 -0.7 -2.3 hypothetical protein compare
GFF4103 -0.7 -1.4 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF2418 -0.7 -1.6 hypothetical protein compare
GFF2890 -0.7 -2.2 PKHD-type hydroxylase YbiX compare
GFF5093 -0.7 -4.1 hypothetical protein compare
GFF2252 -0.7 -1.8 Uncharacterized protein SMc03999 compare
GFF2891 -0.7 -1.1 putative TonB-dependent receptor compare
GFF4794 -0.7 -3.0 Mg/Co/Ni transporter MgtE, CBS domain-containing compare
GFF5248 -0.7 -3.5 hypothetical protein compare
GFF3577 -0.7 -2.9 hypothetical protein compare
GFF5355 -0.7 -1.7 hypothetical protein compare
GFF184 -0.7 -3.2 Alkyl hydroperoxide reductase protein C (EC 1.11.1.15) compare
GFF4134 -0.6 -3.3 hypothetical protein compare
GFF392 -0.6 -4.0 Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80) compare


Specific Phenotypes

None in this experiment

For Sphingobium sp. HT1-2 in carbon and nitrogen source experiments

For carbon and nitrogen source D-Glucose across organisms