Experiment set1S256 for Sphingobium sp. HT1-2

Compare to:

EMM_noCarbon with Sucrose and Putrescine Dihydrochloride

200 most important genes:

  gene name fitness t score description  
GFF215 -4.0 -15.6 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), C-terminal domain compare
GFF3336 -3.8 -2.6 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) compare
GFF79 -3.8 -10.3 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF3305 -3.7 -8.7 Histidinol-phosphatase [alternative form] (EC 3.1.3.15) compare
GFF2789 -3.7 -9.8 N-acetylglutamate kinase (EC 2.7.2.8) compare
GFF3440 -3.7 -8.5 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF4190 -3.6 -2.5 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF1299 -3.6 -4.2 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF3277 -3.6 -13.3 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
GFF216 -3.5 -9.6 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain compare
GFF4764 -3.5 -13.8 Threonine synthase (EC 4.2.3.1) compare
GFF2468 -3.5 -8.6 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF2481 -3.4 -8.3 Prephenate dehydratase (EC 4.2.1.51) compare
GFF1678 -3.4 -3.3 Ferredoxin, 2Fe-2S compare
GFF825 -3.4 -5.6 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
GFF818 -3.4 -7.5 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF824 -3.4 -4.6 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
GFF3818 -3.4 -5.1 Phosphocarrier protein, nitrogen regulation associated compare
GFF1909 -3.4 -9.0 Chorismate mutase I (EC 5.4.99.5) compare
GFF763 -3.4 -11.8 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF877 -3.4 -5.1 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis compare
GFF2491 -3.4 -6.4 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF776 -3.3 -17.1 RNA polymerase sigma-54 factor RpoN compare
GFF1592 -3.3 -6.3 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF3538 -3.3 -14.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF1583 -3.3 -2.3 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type compare
GFF1149 -3.3 -11.7 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
GFF1627 -3.2 -6.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF3434 -3.2 -3.1 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF1424 -3.2 -15.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
GFF1625 -3.2 -12.5 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF879 -3.2 -7.3 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
GFF2056 -3.2 -11.5 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF1452 -3.2 -2.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF3058 -3.1 -11.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
GFF952 -3.1 -10.7 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
GFF814 -3.1 -14.2 Adenylosuccinate synthetase (EC 6.3.4.4) compare
GFF3537 -3.1 -9.6 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF2270 -3.1 -10.3 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
GFF1148 -3.1 -13.8 Nitrogen regulation protein NR(I), GlnG (=NtrC) compare
GFF403 -3.1 -11.2 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF765 -3.0 -20.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF2007 -3.0 -17.7 Phosphoenolpyruvate-protein phosphotransferase, nitrogen regulation associated compare
GFF1626 -3.0 -3.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF1490 -3.0 -13.5 Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) compare
GFF2630 -3.0 -17.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF826 -3.0 -6.6 Cobalamin synthase (EC 2.7.8.26) compare
GFF217 -3.0 -9.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
GFF1454 -3.0 -4.0 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF5 -2.9 -2.9 DNA-binding protein compare
GFF2370 -2.9 -13.5 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF784 -2.9 -5.1 Nitrogen regulatory protein P-II, GlnK compare
GFF3458 -2.9 -13.3 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF3697 -2.9 -12.6 Argininosuccinate synthase (EC 6.3.4.5) compare
GFF3455 -2.9 -11.9 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF2254 -2.9 -3.9 DksA family protein PA5536 (no Zn-finger) compare
GFF878 -2.9 -11.1 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) compare
GFF2449 -2.9 -2.0 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
GFF2054 -2.9 -14.2 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF120 -2.8 -12.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF1958 -2.8 -2.5 hypothetical protein compare
GFF5413 -2.8 -5.3 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF633 -2.8 -12.2 Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF3062 -2.8 -10.2 Imidazole glycerol phosphate synthase cyclase subunit compare
GFF2057 -2.8 -9.5 Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86) compare
GFF500 -2.8 -6.9 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
GFF3322 -2.8 -11.9 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
GFF4129 -2.8 -1.9 Chromosome (plasmid) partitioning protein ParB compare
GFF828 -2.8 -4.6 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
GFF963 -2.8 -12.2 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
GFF4957 -2.7 -2.6 Adenosylhomocysteinase (EC 3.3.1.1) compare
GFF4169 -2.7 -3.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF2404 -2.7 -12.8 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) compare
GFF3061 -2.6 -8.8 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
GFF1972 -2.6 -8.8 Homoserine kinase (EC 2.7.1.39) compare
GFF1053 -2.6 -10.3 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF803 -2.6 -6.9 Chorismate synthase (EC 4.2.3.5) compare
GFF2134 -2.6 -2.7 hypothetical protein compare
GFF816 -2.5 -10.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
GFF3060 -2.5 -7.3 Imidazole glycerol phosphate synthase amidotransferase subunit HisH compare
GFF1891 -2.5 -11.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF66 -2.5 -7.2 Cobyric acid synthase (EC 6.3.5.10) compare
GFF3746 -2.5 -8.2 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
GFF233 -2.4 -10.3 'Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II' transl_table=11 compare
GFF3793 -2.4 -10.2 Argininosuccinate lyase (EC 4.3.2.1) compare
GFF1593 -2.4 -5.2 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF2060 -2.4 -12.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
GFF1052 -2.4 -2.2 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
GFF3334 -2.3 -4.7 Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) compare
GFF785 -2.3 -13.7 Ammonium transporter compare
GFF4055 -2.3 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF4103 -2.3 -2.7 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF3241 -2.3 -9.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
GFF646 -2.3 -9.1 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF4238 -2.2 -2.1 Capsular polysaccharide export system inner membrane protein KpsE compare
GFF3534 -2.2 -8.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF3795 -2.2 -8.5 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF5249 -2.2 -2.7 hypothetical protein compare
GFF3059 -2.2 -5.8 hypothetical protein compare
GFF4947 -2.2 -11.8 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) compare
GFF4052 -2.2 -2.0 RfbJ protein compare
GFF1668 -2.1 -5.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
GFF226 -2.1 -2.9 hypothetical protein compare
GFF2000 -2.1 -2.4 'Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain' transl_table=11 compare
GFF2628 -2.0 -7.8 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF823 -2.0 -5.5 Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
GFF2974 -2.0 -1.9 Probable transcription regulator protein of MDR efflux pump cluster compare
GFF4218 -2.0 -2.1 hypothetical protein compare
GFF4404 -2.0 -1.8 hypothetical protein compare
GFF1521 -2.0 -1.2 hypothetical protein compare
GFF3242 -2.0 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs compare
GFF5252 -1.9 -2.8 Prevent host death protein, Phd antitoxin compare
GFF575 -1.9 -2.8 oligopeptide transporter compare
GFF2890 -1.8 -2.5 PKHD-type hydroxylase YbiX compare
GFF2269 -1.8 -6.1 NLP/P60 family lipoprotein compare
GFF1584 -1.8 -1.4 hypothetical protein compare
GFF1451 -1.7 -1.5 Conserved hypothetical protein probably involved in sulfate reduction compare
GFF2034 -1.7 -7.6 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
GFF3439 -1.7 -3.1 Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) compare
GFF2079 -1.7 -4.2 Enolase (EC 4.2.1.11) compare
GFF5251 -1.7 -3.9 Death on curing protein, Doc toxin compare
GFF5250 -1.7 -3.7 Replication protein compare
GFF4800 -1.7 -1.7 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF4076 -1.7 -5.1 Two-component transcriptional response regulator, LuxR family compare
GFF1973 -1.7 -2.5 Ribonuclease HI (EC 3.1.26.4) compare
GFF1300 -1.6 -5.3 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF3770 -1.6 -2.8 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54) compare
GFF2286 -1.6 -7.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF5248 -1.6 -3.8 hypothetical protein compare
GFF1918 -1.5 -2.1 FIG00687856: Predicted nucleotidyltransferases compare
GFF147 -1.5 -4.8 ATP-dependent hsl protease ATP-binding subunit HslU compare
GFF3291 -1.5 -4.5 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF1075 -1.5 -2.4 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF1855 -1.5 -6.3 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132) compare
GFF2311 -1.5 -1.9 Transcriptional regulator, GntR family compare
GFF3485 -1.5 -2.1 tRNA-Glu-CTC compare
GFF3819 -1.5 -2.9 PTS system permease (IIAMan), nitrogen regulatory IIA protein compare
GFF3929 -1.5 -2.3 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF3783 -1.5 -7.0 L-aspartate oxidase (EC 1.4.3.16) compare
GFF9 -1.5 -1.2 hypothetical protein compare
GFF4760 -1.4 -1.7 tRNA-modifying protein YgfZ compare
GFF1961 -1.4 -2.9 Entericidin A/B family protein compare
GFF5255 -1.4 -5.6 Mobilization protein MobA @ Conjugal transfer protein TraA compare
GFF2219 -1.4 -2.0 Organic hydroperoxide resistance transcriptional regulator compare
GFF5253 -1.4 -6.6 hypothetical protein compare
GFF2076 -1.4 -2.5 Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1) compare
GFF2369 -1.3 -6.0 hypothetical protein compare
GFF142 -1.3 -10.0 Polyhydroxyalkanoic acid synthase compare
GFF953 -1.3 -1.1 hypothetical protein compare
GFF1682 -1.3 -1.8 hypothetical protein compare
GFF1883 -1.3 -1.4 hypothetical protein compare
GFF5247 -1.3 -8.2 hypothetical protein compare
GFF267 -1.3 -1.7 hypothetical protein compare
GFF1453 -1.3 -1.6 Oxidoreductase probably involved in sulfite reduction compare
GFF1251 -1.3 -1.0 hypothetical protein compare
GFF4953 -1.3 -2.3 FIG006611: nucleotidyltransferase compare
GFF2593 -1.3 -6.3 hypothetical protein compare
GFF4211 -1.3 -2.8 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) compare
GFF4200 -1.3 -1.7 Integration host factor alpha subunit compare
GFF2077 -1.2 -1.9 Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1) compare
GFF243 -1.2 -5.3 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
GFF2052 -1.2 -3.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF1698 -1.2 -1.9 hypothetical protein compare
GFF645 -1.2 -9.2 Polyhydroxyalkanoic acid synthase compare
GFF2652 -1.2 -3.6 Phosphate ABC transporter, substrate-binding protein PstS (TC 3.A.1.7.1) compare
GFF4438 -1.2 -5.6 Plasmid replication protein RepA compare
GFF3120 -1.2 -1.9 RecA protein compare
GFF5409 -1.2 -1.1 hypothetical protein compare
GFF2131 -1.2 -6.2 Phosphoglycerate kinase (EC 2.7.2.3) compare
GFF4530 -1.2 -2.1 hypothetical protein compare
GFF3790 -1.2 -0.9 hypothetical protein compare
GFF276 -1.2 -3.3 hypothetical protein compare
GFF1859 -1.2 -3.4 Precorrin-8X methylmutase (EC 5.4.99.61) compare
GFF148 -1.2 -3.2 ATP-dependent protease subunit HslV (EC 3.4.25.2) compare
GFF2132 -1.2 -5.9 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
GFF3610 -1.2 -1.7 hypothetical protein compare
GFF132 -1.2 -2.8 Methylmalonyl-CoA mutase (EC 5.4.99.2) / B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2) compare
GFF951 -1.2 -4.2 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) compare
GFF2900 -1.2 -2.0 HflK protein compare
GFF131 -1.1 -3.0 Methylmalonyl-CoA epimerase (EC 5.1.99.1) @ Ethylmalonyl-CoA epimerase compare
GFF668 -1.1 -3.5 Rrf2 family transcriptional regulator compare
GFF3188 -1.1 -1.6 hypothetical protein compare
GFF3569 -1.1 -2.5 hypothetical protein compare
GFF1589 -1.1 -1.8 hypothetical protein compare
GFF1747 -1.1 -3.4 hypothetical protein compare
GFF4171 -1.0 -3.6 Phosphoenolpyruvate synthase regulatory protein compare
GFF50 -1.0 -1.3 Phosphoglucomutase (EC 5.4.2.2) compare
GFF1248 -1.0 -3.2 hypothetical protein compare
GFF1764 -1.0 -1.9 Outer membrane protein A precursor compare
GFF2542 -1.0 -1.7 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase compare
GFF2787 -1.0 -2.7 Cell division integral membrane protein, YggT and half-length relatives compare
GFF4024 -1.0 -0.9 hypothetical protein compare
GFF1956 -1.0 -0.9 Transcriptional regulator MraZ compare
GFF1921 -1.0 -5.7 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) compare
GFF1566 -1.0 -1.8 hypothetical protein compare
GFF4565 -1.0 -1.5 hypothetical protein compare
GFF1860 -1.0 -4.2 Precorrin-3B synthase compare
GFF582 -1.0 -1.7 NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13) compare
GFF1944 -1.0 -2.6 hypothetical protein compare
GFF2893 -0.9 -5.3 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare


Specific Phenotypes

None in this experiment

For Sphingobium sp. HT1-2 in carbon and nitrogen source experiments

For carbon and nitrogen source Sucrose across organisms