Experiment set1S256 for Sphingobium sp. HT1-2

Compare to:

EMM_noCarbon with Sucrose and Putrescine Dihydrochloride

200 most important genes:

  gene name fitness t score description  
GFF4190 -4.1 -4.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF3334 -3.7 -4.4 Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) compare
GFF877 -3.7 -6.7 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis compare
GFF4764 -3.7 -16.5 Threonine synthase (EC 4.2.3.1) compare
GFF3336 -3.7 -4.4 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) compare
GFF215 -3.7 -19.0 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), C-terminal domain compare
GFF1583 -3.7 -3.6 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type compare
GFF1299 -3.5 -5.4 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF79 -3.5 -12.4 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF403 -3.5 -14.9 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF1592 -3.5 -8.1 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF2491 -3.5 -8.7 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF828 -3.5 -7.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
GFF1627 -3.5 -8.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF3277 -3.4 -16.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
GFF2056 -3.4 -13.9 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF1149 -3.4 -13.6 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
GFF216 -3.4 -11.9 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain compare
GFF4169 -3.4 -4.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF3305 -3.4 -12.1 Histidinol-phosphatase [alternative form] (EC 3.1.3.15) compare
GFF500 -3.4 -9.2 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
GFF824 -3.4 -7.1 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
GFF825 -3.3 -8.5 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
GFF3061 -3.3 -12.8 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
GFF3929 -3.3 -3.9 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF763 -3.3 -15.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF814 -3.2 -17.0 Adenylosuccinate synthetase (EC 6.3.4.4) compare
GFF217 -3.2 -12.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
GFF818 -3.2 -9.9 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF2370 -3.2 -17.5 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF3322 -3.2 -15.8 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
GFF952 -3.2 -15.0 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
GFF4760 -3.2 -5.3 tRNA-modifying protein YgfZ compare
GFF1625 -3.2 -14.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF2007 -3.2 -21.5 Phosphoenolpyruvate-protein phosphotransferase, nitrogen regulation associated compare
GFF3538 -3.2 -17.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF2254 -3.2 -6.6 DksA family protein PA5536 (no Zn-finger) compare
GFF963 -3.2 -14.5 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
GFF2481 -3.2 -12.7 Prephenate dehydratase (EC 4.2.1.51) compare
GFF1454 -3.1 -6.0 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF2057 -3.1 -15.8 Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86) compare
GFF878 -3.1 -15.4 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) compare
GFF5413 -3.1 -6.6 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF3440 -3.1 -11.0 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF826 -3.1 -9.0 Cobalamin synthase (EC 2.7.8.26) compare
GFF776 -3.1 -18.6 RNA polymerase sigma-54 factor RpoN compare
GFF5 -3.1 -5.1 DNA-binding protein compare
GFF2468 -3.1 -11.8 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF2270 -3.1 -11.9 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
GFF765 -3.1 -23.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF2789 -3.0 -9.7 N-acetylglutamate kinase (EC 2.7.2.8) compare
GFF1148 -3.0 -17.7 Nitrogen regulation protein NR(I), GlnG (=NtrC) compare
GFF2311 -3.0 -3.2 Transcriptional regulator, GntR family compare
GFF1424 -3.0 -17.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
GFF633 -3.0 -16.9 Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF3058 -3.0 -13.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
GFF1490 -3.0 -15.3 Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) compare
GFF120 -3.0 -14.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF3818 -2.9 -6.5 Phosphocarrier protein, nitrogen regulation associated compare
GFF2054 -2.9 -18.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF3697 -2.9 -15.2 Argininosuccinate synthase (EC 6.3.4.5) compare
GFF2630 -2.9 -20.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF1909 -2.9 -10.7 Chorismate mutase I (EC 5.4.99.5) compare
GFF3537 -2.9 -13.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF3746 -2.9 -10.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
GFF3062 -2.9 -13.5 Imidazole glycerol phosphate synthase cyclase subunit compare
GFF1972 -2.9 -11.9 Homoserine kinase (EC 2.7.1.39) compare
GFF2628 -2.9 -11.2 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF4055 -2.9 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF803 -2.9 -8.6 Chorismate synthase (EC 4.2.3.5) compare
GFF879 -2.8 -10.4 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
GFF3455 -2.8 -14.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF3458 -2.8 -14.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF2900 -2.8 -3.8 HflK protein compare
GFF66 -2.8 -11.0 Cobyric acid synthase (EC 6.3.5.10) compare
GFF2404 -2.8 -15.9 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) compare
GFF1593 -2.8 -6.1 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF3795 -2.7 -11.8 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF816 -2.7 -13.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
GFF2052 -2.7 -8.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF823 -2.7 -8.0 Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
GFF3242 -2.7 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs compare
GFF2077 -2.7 -3.7 Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1) compare
GFF3434 -2.6 -4.6 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF1053 -2.6 -13.3 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF2060 -2.6 -16.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
GFF3770 -2.6 -3.9 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54) compare
GFF233 -2.6 -15.2 'Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II' transl_table=11 compare
GFF1626 -2.6 -5.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF1891 -2.6 -14.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF3060 -2.6 -8.2 Imidazole glycerol phosphate synthase amidotransferase subunit HisH compare
GFF4800 -2.6 -2.5 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF646 -2.5 -14.1 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF3241 -2.5 -13.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
GFF1668 -2.5 -8.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
GFF1678 -2.5 -4.8 Ferredoxin, 2Fe-2S compare
GFF3534 -2.5 -12.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF785 -2.5 -16.9 Ammonium transporter compare
GFF3439 -2.4 -5.9 Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) compare
GFF3793 -2.4 -12.1 Argininosuccinate lyase (EC 4.3.2.1) compare
GFF4769 -2.4 -2.7 putative cox locus protein compare
GFF1300 -2.2 -9.4 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF3059 -2.1 -6.8 hypothetical protein compare
GFF5255 -2.0 -8.8 Mobilization protein MobA @ Conjugal transfer protein TraA compare
GFF2079 -2.0 -5.6 Enolase (EC 4.2.1.11) compare
GFF4947 -2.0 -12.2 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) compare
GFF4953 -2.0 -3.1 FIG006611: nucleotidyltransferase compare
GFF784 -1.9 -5.1 Nitrogen regulatory protein P-II, GlnK compare
GFF1859 -1.9 -5.6 Precorrin-8X methylmutase (EC 5.4.99.61) compare
GFF4076 -1.9 -6.6 Two-component transcriptional response regulator, LuxR family compare
GFF3819 -1.9 -3.8 PTS system permease (IIAMan), nitrogen regulatory IIA protein compare
GFF2369 -1.8 -9.7 hypothetical protein compare
GFF5355 -1.8 -3.1 hypothetical protein compare
GFF2286 -1.8 -8.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF234 -1.8 -2.5 hypothetical protein compare
GFF1764 -1.7 -2.2 Outer membrane protein A precursor compare
GFF4211 -1.7 -3.4 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) compare
GFF243 -1.7 -6.8 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
GFF2034 -1.6 -9.0 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
GFF1856 -1.6 -6.8 Precorrin-6A reductase (EC 1.3.1.54) compare
GFF148 -1.6 -3.9 ATP-dependent protease subunit HslV (EC 3.4.25.2) compare
GFF55 -1.6 -2.6 LSU ribosomal protein L25p compare
GFF5248 -1.6 -5.2 hypothetical protein compare
GFF4438 -1.5 -7.9 Plasmid replication protein RepA compare
GFF5253 -1.5 -8.1 hypothetical protein compare
GFF271 -1.5 -3.2 hypothetical protein compare
GFF4103 -1.5 -2.3 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF3931 -1.5 -5.8 Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) compare
GFF379 -1.5 -2.6 Tim44-like domain protein compare
GFF5249 -1.4 -3.9 hypothetical protein compare
GFF5252 -1.4 -3.5 Prevent host death protein, Phd antitoxin compare
GFF1860 -1.4 -7.2 Precorrin-3B synthase compare
GFF1745 -1.4 -6.1 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF2269 -1.4 -6.6 NLP/P60 family lipoprotein compare
GFF3291 -1.4 -7.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF1618 -1.4 -2.8 Transcriptional regulator, AsnC family compare
GFF147 -1.3 -4.9 ATP-dependent hsl protease ATP-binding subunit HslU compare
GFF5346 -1.3 -2.6 hypothetical protein compare
GFF3138 -1.3 -2.7 Translation elongation factor LepA compare
GFF5250 -1.3 -3.4 Replication protein compare
GFF817 -1.3 -4.0 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF5247 -1.3 -9.6 hypothetical protein compare
GFF1858 -1.3 -3.6 Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) compare
GFF5078 -1.3 -3.1 hypothetical protein compare
GFF2053 -1.3 -3.5 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF1451 -1.3 -1.6 Conserved hypothetical protein probably involved in sulfate reduction compare
GFF132 -1.2 -3.2 Methylmalonyl-CoA mutase (EC 5.4.99.2) / B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2) compare
GFF2132 -1.2 -7.6 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
GFF4171 -1.2 -4.9 Phosphoenolpyruvate synthase regulatory protein compare
GFF645 -1.2 -9.8 Polyhydroxyalkanoic acid synthase compare
GFF1566 -1.2 -3.5 hypothetical protein compare
GFF1855 -1.2 -6.3 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132) compare
GFF142 -1.2 -9.5 Polyhydroxyalkanoic acid synthase compare
GFF3564 -1.2 -2.9 hypothetical protein compare
GFF5251 -1.2 -3.2 Death on curing protein, Doc toxin compare
GFF2134 -1.2 -1.0 hypothetical protein compare
GFF3949 -1.2 -3.4 Transcriptional regulator, AcrR family compare
GFF1852 -1.2 -5.7 Hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing) (EC 6.3.5.9) compare
GFF2131 -1.2 -7.1 Phosphoglycerate kinase (EC 2.7.2.3) compare
GFF143 -1.2 -3.9 PhbF compare
GFF2593 -1.2 -6.1 hypothetical protein compare
GFF350 -1.2 -5.0 Capsular polysaccharide glycosyltransferase biosynthesis protein WcbB compare
GFF492 -1.1 -3.0 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF610 -1.1 -2.6 Uncharacterized proteins YbdD and YjiX compare
GFF5241 -1.1 -5.4 Transcriptional regulator, AcrR family compare
GFF3783 -1.1 -6.5 L-aspartate oxidase (EC 1.4.3.16) compare
GFF5254 -1.1 -4.8 Mobilization protein compare
GFF3681 -1.0 -2.6 hypothetical protein compare
GFF4773 -1.0 -2.9 hypothetical protein compare
GFF719 -1.0 -2.0 hypothetical protein compare
GFF2367 -1.0 -2.0 Protein translocase membrane subunit SecG compare
GFF2599 -1.0 -6.6 Quinohemoprotein amine dehydrogenase alpha subunit (EC 1.4.99.-) compare
GFF949 -0.9 -4.0 hypothetical protein compare
GFF4130 -0.9 -3.2 Chromosome (plasmid) partitioning protein ParA compare
GFF1679 -0.9 -5.7 Cysteine desulfurase (EC 2.8.1.7) compare
GFF1921 -0.9 -6.0 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) compare
GFF2893 -0.9 -5.2 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF3064 -0.9 -3.6 Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
GFF948 -0.9 -4.2 Cytochrome P450 compare
GFF2890 -0.9 -2.3 PKHD-type hydroxylase YbiX compare
GFF348 -0.9 -4.0 Capsular polysaccharide export system protein KpsS compare
GFF1747 -0.9 -3.1 hypothetical protein compare
GFF3569 -0.9 -3.4 hypothetical protein compare
GFF246 -0.9 -4.5 Quinolinate synthetase (EC 2.5.1.72) compare
GFF659 -0.9 -3.9 Phosphohistidine phosphatase SixA compare
GFF4777 -0.9 -6.1 Signal peptidase I (EC 3.4.21.89) compare
GFF4954 -0.8 -3.0 Phosphotransferase involved in threonylcarbamoyladenosine t(6)A37 formation in tRNA compare
GFF1963 -0.8 -1.3 Twin-arginine translocation protein TatB compare
GFF737 -0.8 -2.3 hypothetical protein compare
GFF2792 -0.8 -5.5 hypothetical protein compare
GFF3233 -0.8 -1.9 hypothetical protein compare
GFF1150 -0.8 -3.7 tRNA-dihydrouridine synthase DusB compare
GFF4508 -0.8 -1.7 hypothetical protein compare
GFF2416 -0.8 -2.3 Site-specific tyrosine recombinase XerD compare
GFF4293 -0.8 -2.3 hypothetical protein compare
GFF2791 -0.8 -6.4 Two-component system sensor histidine kinase compare
GFF1857 -0.8 -3.7 Precorrin-3B C(17)-methyltransferase (EC 2.1.1.131) compare
GFF2597 -0.8 -4.8 Quinohemoprotein amine dehydrogenase gamma subunit (EC 1.4.99.-) compare
GFF2356 -0.8 -1.0 COG2740: Predicted nucleic-acid-binding protein implicated in transcription termination / Ribosomal protein L7Ae family protein YlxQ compare
GFF5371 -0.8 -2.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sphingobium sp. HT1-2 in carbon and nitrogen source experiments

For carbon and nitrogen source Sucrose across organisms