Experiment set1S254 for Sphingobium sp. HT1-2

Compare to:

EMM_noCarbon with Sucrose and Putrescine Dihydrochloride

200 most important genes:

  gene name fitness t score description  
GFF2254 -4.6 -5.4 DksA family protein PA5536 (no Zn-finger) compare
GFF3242 -4.0 -6.0 ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs compare
GFF3458 -3.9 -14.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF1454 -3.9 -2.7 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF3818 -3.9 -5.3 Phosphocarrier protein, nitrogen regulation associated compare
GFF215 -3.8 -16.7 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), C-terminal domain compare
GFF1592 -3.8 -6.3 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF3537 -3.8 -12.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF3062 -3.7 -12.7 Imidazole glycerol phosphate synthase cyclase subunit compare
GFF828 -3.6 -4.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
GFF216 -3.6 -9.9 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain compare
GFF2052 -3.6 -3.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF2468 -3.6 -8.7 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF3277 -3.6 -14.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
GFF1668 -3.6 -7.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
GFF3061 -3.6 -11.0 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
GFF633 -3.5 -15.1 Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF2057 -3.5 -14.3 Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86) compare
GFF2007 -3.5 -20.2 Phosphoenolpyruvate-protein phosphotransferase, nitrogen regulation associated compare
GFF3538 -3.5 -14.6 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF1909 -3.5 -7.6 Chorismate mutase I (EC 5.4.99.5) compare
GFF818 -3.5 -7.7 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF1625 -3.4 -12.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF814 -3.4 -15.1 Adenylosuccinate synthetase (EC 6.3.4.4) compare
GFF1627 -3.4 -6.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF4190 -3.4 -4.0 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF3434 -3.4 -3.2 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF2481 -3.3 -8.5 Prephenate dehydratase (EC 4.2.1.51) compare
GFF3793 -3.3 -11.8 Argininosuccinate lyase (EC 4.3.2.1) compare
GFF1593 -3.3 -5.0 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF3058 -3.3 -12.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
GFF3241 -3.3 -11.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
GFF2370 -3.3 -14.4 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF823 -3.3 -6.6 Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
GFF1424 -3.3 -15.9 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
GFF2060 -3.2 -15.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
GFF1148 -3.2 -15.8 Nitrogen regulation protein NR(I), GlnG (=NtrC) compare
GFF763 -3.2 -12.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF3336 -3.2 -4.4 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) compare
GFF217 -3.2 -9.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
GFF5 -3.2 -3.1 DNA-binding protein compare
GFF1149 -3.2 -12.6 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
GFF3795 -3.2 -9.2 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF1053 -3.2 -12.8 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF877 -3.2 -6.1 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis compare
GFF879 -3.2 -7.9 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
GFF816 -3.2 -12.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
GFF3746 -3.2 -9.9 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
GFF1972 -3.2 -10.3 Homoserine kinase (EC 2.7.1.39) compare
GFF403 -3.2 -11.9 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF785 -3.2 -17.8 Ammonium transporter compare
GFF3060 -3.2 -7.9 Imidazole glycerol phosphate synthase amidotransferase subunit HisH compare
GFF776 -3.1 -16.1 RNA polymerase sigma-54 factor RpoN compare
GFF2404 -3.1 -14.3 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) compare
GFF3697 -3.1 -14.1 Argininosuccinate synthase (EC 6.3.4.5) compare
GFF826 -3.1 -6.2 Cobalamin synthase (EC 2.7.8.26) compare
GFF2270 -3.1 -10.7 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
GFF5252 -3.1 -3.6 Prevent host death protein, Phd antitoxin compare
GFF3455 -3.1 -13.5 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF952 -3.0 -12.1 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
GFF2054 -3.0 -15.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF3534 -3.0 -12.0 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF2789 -3.0 -8.6 N-acetylglutamate kinase (EC 2.7.2.8) compare
GFF3322 -3.0 -12.8 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
GFF4764 -3.0 -14.1 Threonine synthase (EC 4.2.3.1) compare
GFF2077 -2.9 -2.8 Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1) compare
GFF1583 -2.9 -2.8 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type compare
GFF120 -2.9 -13.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF3439 -2.9 -3.8 Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) compare
GFF765 -2.9 -20.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF1891 -2.9 -12.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF4129 -2.9 -2.0 Chromosome (plasmid) partitioning protein ParB compare
GFF3440 -2.9 -7.6 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF2628 -2.8 -9.3 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF4957 -2.8 -2.7 Adenosylhomocysteinase (EC 3.3.1.1) compare
GFF4052 -2.8 -1.9 RfbJ protein compare
GFF1490 -2.8 -13.9 Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) compare
GFF2056 -2.8 -11.0 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF963 -2.7 -12.6 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
GFF1626 -2.7 -4.8 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF3305 -2.7 -8.9 Histidinol-phosphatase [alternative form] (EC 3.1.3.15) compare
GFF66 -2.7 -8.2 Cobyric acid synthase (EC 6.3.5.10) compare
GFF115 -2.7 -1.9 DNA topoisomerase I (EC 5.99.1.2) compare
GFF2630 -2.7 -16.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF500 -2.7 -7.2 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
GFF878 -2.6 -11.4 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) compare
GFF784 -2.6 -4.0 Nitrogen regulatory protein P-II, GlnK compare
GFF233 -2.6 -10.4 'Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II' transl_table=11 compare
GFF79 -2.6 -8.5 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF4169 -2.5 -3.8 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF5404 -2.5 -1.9 hypothetical protein compare
GFF3334 -2.4 -4.8 Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) compare
GFF825 -2.4 -5.1 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
GFF5413 -2.3 -5.1 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF4947 -2.3 -11.4 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) compare
GFF2491 -2.3 -6.2 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF824 -2.3 -5.0 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
GFF50 -2.3 -2.1 Phosphoglucomutase (EC 5.4.2.2) compare
GFF646 -2.2 -10.4 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF226 -2.2 -3.0 hypothetical protein compare
GFF4760 -2.2 -2.8 tRNA-modifying protein YgfZ compare
GFF4404 -2.2 -2.0 hypothetical protein compare
GFF2369 -2.1 -10.0 hypothetical protein compare
GFF1678 -2.1 -3.3 Ferredoxin, 2Fe-2S compare
GFF3794 -2.1 -2.3 hypothetical protein compare
GFF803 -2.1 -6.7 Chorismate synthase (EC 4.2.3.5) compare
GFF3291 -2.0 -6.9 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF2900 -2.0 -3.0 HflK protein compare
GFF1963 -1.9 -1.7 Twin-arginine translocation protein TatB compare
GFF148 -1.9 -4.5 ATP-dependent protease subunit HslV (EC 3.4.25.2) compare
GFF3929 -1.9 -2.8 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF719 -1.9 -1.8 hypothetical protein compare
GFF3783 -1.9 -7.7 L-aspartate oxidase (EC 1.4.3.16) compare
GFF33 -1.8 -1.4 hypothetical protein compare
GFF2000 -1.8 -2.3 'Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain' transl_table=11 compare
GFF1299 -1.8 -3.8 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF2787 -1.8 -4.3 Cell division integral membrane protein, YggT and half-length relatives compare
GFF3578 -1.8 -4.2 hypothetical protein compare
GFF2286 -1.8 -8.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF3770 -1.8 -2.9 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54) compare
GFF1618 -1.7 -1.9 Transcriptional regulator, AsnC family compare
GFF3059 -1.7 -4.6 hypothetical protein compare
GFF1858 -1.7 -4.1 Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) compare
GFF2269 -1.7 -6.6 NLP/P60 family lipoprotein compare
GFF3567 -1.7 -3.8 hypothetical protein compare
GFF4800 -1.7 -3.3 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF2546 -1.6 -2.4 Fatty acid desaturase, type 2 compare
GFF1764 -1.6 -3.0 Outer membrane protein A precursor compare
GFF1074 -1.6 -1.4 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) compare
GFF1854 -1.6 -3.1 Cobalamin biosynthesis protein CobE compare
GFF3572 -1.5 -3.4 hypothetical protein compare
GFF2901 -1.5 -2.5 HflC protein compare
GFF5254 -1.5 -4.9 Mobilization protein compare
GFF2132 -1.5 -7.9 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
GFF3569 -1.5 -3.2 hypothetical protein compare
GFF147 -1.5 -4.6 ATP-dependent hsl protease ATP-binding subunit HslU compare
GFF4076 -1.5 -4.8 Two-component transcriptional response regulator, LuxR family compare
GFF4238 -1.5 -1.9 Capsular polysaccharide export system inner membrane protein KpsE compare
GFF4931 -1.5 -3.7 hypothetical protein compare
GFF5255 -1.5 -5.9 Mobilization protein MobA @ Conjugal transfer protein TraA compare
GFF4438 -1.4 -6.8 Plasmid replication protein RepA compare
GFF1452 -1.4 -1.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
GFF184 -1.4 -5.0 Alkyl hydroperoxide reductase protein C (EC 1.11.1.15) compare
GFF5247 -1.4 -8.0 hypothetical protein compare
GFF5092 -1.4 -3.5 hypothetical protein compare
GFF645 -1.4 -10.5 Polyhydroxyalkanoic acid synthase compare
GFF142 -1.4 -10.6 Polyhydroxyalkanoic acid synthase compare
GFF4953 -1.3 -2.6 FIG006611: nucleotidyltransferase compare
GFF5241 -1.3 -4.4 Transcriptional regulator, AcrR family compare
GFF132 -1.3 -3.3 Methylmalonyl-CoA mutase (EC 5.4.99.2) / B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2) compare
GFF350 -1.3 -4.0 Capsular polysaccharide glycosyltransferase biosynthesis protein WcbB compare
GFF5078 -1.3 -2.3 hypothetical protein compare
GFF2076 -1.3 -2.3 Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1) compare
GFF4690 -1.3 -1.7 hypothetical protein compare
GFF817 -1.3 -4.5 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF5253 -1.3 -4.9 hypothetical protein compare
GFF2079 -1.3 -3.8 Enolase (EC 4.2.1.11) compare
GFF5409 -1.2 -1.7 hypothetical protein compare
GFF48 -1.2 -1.9 GTP-binding and nucleic acid-binding protein YchF compare
GFF2034 -1.2 -6.0 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
GFF948 -1.2 -4.6 Cytochrome P450 compare
GFF2739 -1.2 -1.8 L-ectoine synthase (EC 4.2.1.108) compare
GFF282 -1.2 -2.0 hypothetical protein compare
GFF2753 -1.2 -1.6 hypothetical protein compare
GFF575 -1.2 -2.3 oligopeptide transporter compare
GFF3048 -1.2 -3.4 Two-component nitrogen fixation transcriptional regulator FixJ compare
GFF2902 -1.1 -3.8 HtrA protease/chaperone protein compare
GFF1747 -1.1 -4.0 hypothetical protein compare
GFF804 -1.1 -4.1 Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9) compare
GFF3323 -1.1 -5.1 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) compare
GFF1111 -1.1 -1.4 hypothetical protein compare
GFF4075 -1.1 -7.0 Two-component system sensor histidine kinase compare
GFF2893 -1.1 -7.3 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF5248 -1.1 -2.7 hypothetical protein compare
GFF5249 -1.1 -1.9 hypothetical protein compare
GFF4055 -1.1 -3.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF4217 -1.0 -1.1 hypothetical protein compare
GFF2311 -1.0 -2.0 Transcriptional regulator, GntR family compare
GFF5113 -1.0 -1.0 hypothetical protein compare
GFF246 -1.0 -4.0 Quinolinate synthetase (EC 2.5.1.72) compare
GFF1902 -1.0 -1.8 N-acetylglutamate kinase (EC 2.7.2.8) compare
GFF3681 -1.0 -1.7 hypothetical protein compare
GFF5250 -1.0 -1.9 Replication protein compare
GFF224 -1.0 -1.3 hypothetical protein compare
GFF1460 -1.0 -3.6 glycoside hydrolase, family 25 compare
GFF243 -1.0 -3.7 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
GFF1920 -1.0 -6.5 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) compare
GFF1853 -1.0 -4.5 Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133) compare
GFF1852 -1.0 -4.5 Hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing) (EC 6.3.5.9) compare
GFF3573 -1.0 -1.7 hypothetical protein compare
GFF1624 -1.0 -4.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.241) compare
GFF4530 -1.0 -2.4 hypothetical protein compare
GFF1052 -1.0 -1.5 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
GFF3840 -1.0 -3.5 hypothetical protein compare
GFF1150 -1.0 -3.5 tRNA-dihydrouridine synthase DusB compare
GFF1075 -1.0 -1.8 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) compare
GFF2131 -1.0 -5.7 Phosphoglycerate kinase (EC 2.7.2.3) compare
GFF1921 -1.0 -6.4 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) compare
GFF3819 -1.0 -2.7 PTS system permease (IIAMan), nitrogen regulatory IIA protein compare
GFF2219 -1.0 -1.5 Organic hydroperoxide resistance transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Sphingobium sp. HT1-2 in carbon and nitrogen source experiments

For carbon and nitrogen source Sucrose across organisms