Experiment set1S254 for Sphingobium sp. HT1-2

Compare to:

EMM_noCarbon with Sucrose and Putrescine Dihydrochloride

200 most detrimental genes:

  gene name fitness t score description  
GFF4470 +1.5 3.0 hypothetical protein compare
GFF3366 +1.4 2.1 hypothetical protein compare
GFF3381 +1.3 2.5 hypothetical protein compare
GFF3394 +1.2 6.5 Transcriptional regulator CidR, LysR family compare
GFF3371 +1.1 2.1 hypothetical protein compare
GFF267 +1.0 1.8 hypothetical protein compare
GFF1862 +1.0 5.5 Transcriptional regulator, MarR family compare
GFF4832 +1.0 3.7 hypothetical protein compare
GFF4669 +1.0 2.4 Mobile element protein compare
GFF4453 +1.0 3.8 hypothetical protein compare
GFF4450 +1.0 2.8 CopG protein compare
GFF2017 +0.9 4.6 Glycerol-3-phosphate regulon repressor GlpR compare
GFF2959 +0.9 2.8 hypothetical protein compare
GFF219 +0.9 1.8 hypothetical protein compare
GFF3376 +0.9 4.3 hypothetical protein compare
GFF4148 +0.9 2.8 hypothetical protein compare
GFF2556 +0.9 2.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
GFF4492 +0.9 2.6 Flagellar biosynthesis protein FliQ compare
GFF2354 +0.9 1.5 Plasmid stabilization system compare
GFF4487 +0.9 4.0 hypothetical protein compare
GFF3377 +0.9 3.5 hypothetical protein compare
GFF4753 +0.8 2.7 Resolvase, N-terminal domain compare
GFF4816 +0.8 1.1 hypothetical protein compare
GFF3396 +0.8 6.0 hypothetical protein compare
GFF4840 +0.8 3.6 hypothetical protein compare
GFF4448 +0.8 3.8 hypothetical protein compare
GFF3126 +0.8 1.4 hypothetical protein compare
GFF5037 +0.8 5.6 Levanase (EC 3.2.1.65) compare
GFF3378 +0.8 2.2 hypothetical protein compare
GFF3401 +0.8 5.0 L-lactate dehydrogenase (EC 1.1.1.27) compare
GFF622 +0.8 2.4 hypothetical protein compare
GFF4712 +0.8 3.0 transposase compare
GFF404 +0.8 5.8 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
GFF3749 +0.8 3.1 7-cyano-7-deazaguanine synthase (EC 6.3.4.20) compare
GFF2336 +0.7 1.7 hypothetical protein compare
GFF3398 +0.7 5.6 L-lactate permease compare
GFF3552 +0.7 1.7 hypothetical protein compare
GFF4984 +0.7 3.9 hypothetical protein compare
GFF394 +0.7 3.1 Transcriptional regulator, Xre family compare
GFF4462 +0.7 1.5 hypothetical protein compare
GFF4845 +0.7 4.6 Intracellular protease compare
GFF613 +0.7 2.0 hypothetical protein compare
GFF3380 +0.7 0.8 hypothetical protein compare
GFF4724 +0.7 2.6 hypothetical protein compare
GFF4465 +0.7 3.7 protein of unknown function DUF1622 compare
GFF3387 +0.7 5.5 hypothetical protein compare
GFF671 +0.7 1.9 RidA/YER057c/UK114 superfamily, group 6 compare
GFF4829 +0.7 2.9 hypothetical protein compare
GFF3395 +0.7 5.3 Quinate/shikimate dehydrogenase [Pyrroloquinoline-quinone] (EC 1.1.5.8) compare
GFF762 +0.7 4.5 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
GFF3384 +0.7 4.8 Chromate resistance protein ChrB compare
GFF5001 +0.7 3.3 Acyl-homoserine lactone-binding transcriptional activator, LuxR family compare
GFF4995 +0.7 1.5 similar to partitioning protein compare
GFF4689 +0.7 5.2 proton/glutamate symporter compare
GFF3382 +0.7 1.7 hypothetical protein compare
GFF2012 +0.7 3.6 Integrase compare
GFF3367 +0.7 2.8 hypothetical protein compare
GFF4681 +0.7 4.3 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
GFF4485 +0.7 3.9 RNA polymerase sigma factor cnrH compare
GFF4811 +0.7 1.6 hypothetical protein compare
GFF3374 +0.7 1.0 hypothetical protein compare
GFF4676 +0.7 3.6 N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) compare
GFF4979 +0.7 2.3 hypothetical protein compare
GFF3393 +0.6 5.2 hypothetical protein compare
GFF51 +0.6 1.9 hypothetical protein compare
GFF4401 +0.6 2.1 hypothetical protein compare
GFF377 +0.6 1.5 Protein-export protein SecB (maintains pre-export unfolded state) compare
GFF4486 +0.6 3.8 hypothetical protein compare
GFF2179 +0.6 2.0 hypothetical protein compare
GFF5025 +0.6 2.4 Conjugal transfer protein; TraA compare
GFF4261 +0.6 2.4 hypothetical protein compare
GFF631 +0.6 1.8 hypothetical protein compare
GFF4490 +0.6 4.1 Copper resistance protein D compare
GFF3082 +0.6 1.8 hypothetical protein compare
GFF5217 +0.6 2.5 Sodium-transporting ATPase subunit C compare
GFF5352 +0.6 3.2 hypothetical protein compare
GFF5385 +0.6 3.0 hypothetical protein compare
GFF4241 +0.6 2.6 hypothetical protein compare
GFF28 +0.6 1.2 hypothetical protein compare
GFF4755 +0.6 1.6 hypothetical protein compare
GFF5036 +0.6 4.7 Uncharacterized sugar:proton symporter compare
GFF3391 +0.6 2.1 Periplasmic mercury(+2) binding protein, MerP compare
GFF3368 +0.6 3.6 hypothetical protein compare
GFF3373 +0.6 4.2 hypothetical protein compare
GFF4449 +0.6 3.0 Histidine utilization repressor compare
GFF4495 +0.6 2.5 Protein formerly called heavy metal resistance transcriptional regulator HmrR compare
GFF4451 +0.6 3.6 hypothetical protein compare
GFF4831 +0.6 2.7 Transposase compare
GFF4064 +0.6 3.1 FIG00636652: hypothetical protein compare
GFF4834 +0.6 2.5 Transcriptional regulator, AcrR family compare
GFF3386 +0.6 3.7 Superoxide dismutase [Mn] (EC 1.15.1.1) compare
GFF4480 +0.6 2.6 hypothetical protein compare
GFF4488 +0.6 2.9 Cytochrome c family protein compare
GFF70 +0.6 1.1 hypothetical protein compare
GFF5016 +0.6 2.4 Methyltransferase type 12 compare
GFF5000 +0.6 2.7 hypothetical protein compare
GFF4463 +0.6 3.4 Phosphomannomutase (EC 5.4.2.8) compare
GFF4687 +0.6 4.0 Protein often near L-alanine-DL-glutamate epimerase (cell wall recycling) compare
GFF4989 +0.6 3.4 Biotin carboxylase (EC 6.3.4.14) compare
GFF5242 +0.6 4.3 Quinone oxidoreductase (EC 1.6.5.5) compare
GFF636 +0.6 2.3 hypothetical protein compare
GFF5005 +0.6 2.4 hypothetical protein compare
GFF5039 +0.6 1.7 Candidate 1: dienelactone hydrolase compare
GFF4672 +0.6 4.6 N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) compare
GFF4445 +0.6 3.2 Transcriptional regulator, AcrR family compare
GFF4837 +0.6 4.8 Excinuclease ABC subunit A paralog of unknown function compare
GFF5133 +0.6 1.0 hypothetical protein compare
GFF5137 +0.6 1.7 hypothetical protein compare
GFF2956 +0.6 2.1 hypothetical protein compare
GFF4497 +0.6 2.9 hypothetical protein compare
GFF3388 +0.6 2.6 Mobile element protein compare
GFF1493 +0.6 4.4 hypothetical protein compare
GFF5002 +0.6 3.3 Acyl-homoserine lactone-binding transcriptional activator, LuxR family compare
GFF5027 +0.6 3.7 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
GFF1498 +0.6 3.4 hypothetical protein compare
GFF4482 +0.6 3.3 hypothetical protein compare
GFF2339 +0.6 1.8 hypothetical protein compare
GFF3961 +0.6 2.2 hypothetical protein compare
GFF4835 +0.6 3.5 Quinone oxidoreductase (EC 1.6.5.5) compare
GFF4467 +0.5 2.7 hypothetical protein compare
GFF4714 +0.5 3.8 Oleate hydratase (EC 4.2.1.53) compare
GFF4484 +0.5 4.2 Multicopper oxidase compare
GFF3390 +0.5 2.3 Mercuric transport protein, MerT compare
GFF5225 +0.5 3.4 Oleate hydratase (EC 4.2.1.53) compare
GFF3392 +0.5 4.0 Mercuric ion reductase (EC 1.16.1.1) compare
GFF4986 +0.5 2.1 hypothetical protein compare
GFF3365 +0.5 2.4 hypothetical protein compare
GFF4704 +0.5 3.6 hypothetical protein compare
GFF5394 +0.5 2.0 Magnesium and cobalt transport protein CorA compare
GFF10 +0.5 0.8 hypothetical protein compare
GFF4817 +0.5 2.1 hypothetical protein compare
GFF1099 +0.5 1.4 Type IV secretory pathway, VirD2 components (relaxase) compare
GFF1864 +0.5 1.3 hypothetical protein compare
GFF1440 +0.5 1.1 hypothetical protein compare
GFF4711 +0.5 2.8 transposase compare
GFF4493 +0.5 3.7 Thioredoxin reductase (EC 1.8.1.9) compare
GFF3385 +0.5 4.0 Chromate transport protein ChrA compare
GFF4858 +0.5 1.8 nuclease (SNase domain protein) compare
GFF4680 +0.5 3.8 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily compare
GFF4843 +0.5 1.0 hypothetical protein compare
GFF5032 +0.5 4.1 PTS system, inactive IIB catalytic domain / PTS system, fructose-specific IIB component (EC 2.7.1.202) / PTS system, fructose-specific IIC component compare
GFF5019 +0.5 2.5 Small heat shock protein compare
GFF4716 +0.5 2.0 hypothetical protein compare
GFF2178 +0.5 2.3 hypothetical protein compare
GFF5392 +0.5 3.2 Two-component nitrogen fixation transcriptional regulator FixJ compare
GFF2743 +0.5 1.3 hypothetical protein compare
GFF724 +0.5 1.5 hypothetical protein compare
GFF4693 +0.5 3.2 hypothetical protein compare
GFF3400 +0.5 3.3 L-lactate dehydrogenase compare
GFF4685 +0.5 3.7 N-acyl-D-amino-acid deacylase (EC 3.5.1.81) compare
GFF1286 +0.5 1.1 Zinc uptake regulation protein Zur compare
GFF4820 +0.5 3.2 Glycosyl transferase, group 1 compare
GFF2592 +0.5 2.5 Transcriptional regulator, GntR family compare
GFF5243 +0.5 2.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF1581 +0.5 3.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
GFF3040 +0.5 1.1 hypothetical protein compare
GFF4476 +0.5 3.8 Copper/silver efflux RND transporter, membrane fusion protein CusB compare
GFF1306 +0.5 2.7 hypothetical protein compare
GFF4094 +0.5 0.5 tRNA-Ile-GAT compare
GFF5007 +0.5 4.0 Thymidine phosphorylase (EC 2.4.2.4) compare
GFF5028 +0.5 2.5 Shikimate 5-dehydrogenase I gamma (EC 1.1.1.25) compare
GFF3831 +0.5 0.6 hypothetical protein compare
GFF4726 +0.5 1.8 Putative inner membrane protein compare
GFF4980 +0.5 2.8 Transposase compare
GFF4856 +0.5 3.5 hypothetical protein compare
GFF595 +0.5 1.6 hypothetical protein compare
GFF4977 +0.5 3.6 Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
GFF4808 +0.5 2.9 hypothetical protein compare
GFF3397 +0.5 3.6 hypothetical protein compare
GFF5022 +0.5 1.2 Heat shock protein 10 kDa family chaperone GroES compare
GFF4671 +0.5 2.8 hypothetical protein compare
GFF1703 +0.5 1.1 hypothetical protein compare
GFF5015 +0.5 3.0 Integrase-like protein compare
GFF4988 +0.5 3.6 Prolyl oligopeptidase family protein compare
GFF4722 +0.5 2.3 hypothetical protein compare
GFF4727 +0.5 2.5 DNA-invertase compare
GFF820 +0.5 1.3 hypothetical protein compare
GFF3372 +0.5 0.9 hypothetical protein compare
GFF795 +0.5 1.5 RcnR-like protein clustered with cobalt-zinc-cadmium resistance protein CzcD compare
GFF5374 +0.5 1.9 plasmid stabilization system protein compare
GFF5311 +0.5 2.7 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) periplasmic (secreted in GramPositives) compare
GFF4409 +0.5 1.8 hypothetical protein compare
GFF4491 +0.5 2.9 Putative type II restriction enzyme NmeDIP (EC 3.1.21.4) (Endonuclease NmeDIP) (R.NmeDIP) compare
GFF3379 +0.5 1.7 hypothetical protein compare
GFF4489 +0.5 0.9 Copper resistance protein CopC compare
GFF4713 +0.5 3.6 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
GFF4818 +0.5 2.7 Uncharacterized UPF0118 membrane protein compare
GFF4466 +0.5 2.9 Bll4814 protein compare
GFF4719 +0.5 2.8 Catalase-like heme-binding protein compare
GFF5060 +0.5 1.5 Truncated hemoglobins-like protein compare
GFF2936 +0.5 2.6 hypothetical protein compare
GFF5143 +0.5 1.9 Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT compare
GFF5009 +0.5 2.6 Two-component transcriptional response regulator, LuxR family compare
GFF4446 +0.5 3.5 TonB-dependent receptor compare
GFF1165 +0.5 1.4 hypothetical protein compare
GFF4674 +0.5 3.2 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
GFF4810 +0.5 3.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
GFF3946 +0.5 3.9 Peptidase, M16 family compare
GFF4477 +0.5 3.1 hypothetical protein compare
GFF1699 +0.5 2.1 YafQ toxin protein compare


Specific Phenotypes

None in this experiment

For Sphingobium sp. HT1-2 in carbon and nitrogen source experiments

For carbon and nitrogen source Sucrose across organisms