Experiment set1S251 for Sphingobium sp. HT1-2

Compare to:

EMM_noCarbon with Sucrose and Putrescine Dihydrochloride

200 most important genes:

  gene name fitness t score description  
GFF2052 -4.3 -5.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
GFF877 -4.1 -5.5 Cob(I)alamin adenosyltransferase (EC 2.5.1.17) @ Cob(I)alamin adenosyltransferase (EC 2.5.1.17), clustered with cobalamin synthesis compare
GFF823 -4.0 -6.6 Adenosylcobinamide kinase (EC 2.7.1.156) / Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
GFF2254 -4.0 -6.6 DksA family protein PA5536 (no Zn-finger) compare
GFF3334 -3.9 -3.8 Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) compare
GFF4190 -3.8 -6.4 [Protein-PII] uridylyltransferase (EC 2.7.7.59) / [Protein-PII]-UMP uridylyl-removing enzyme compare
GFF3929 -3.6 -3.5 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF79 -3.6 -12.2 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
GFF216 -3.6 -11.2 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain compare
GFF963 -3.6 -13.8 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
GFF3538 -3.6 -17.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
GFF66 -3.6 -10.0 Cobyric acid synthase (EC 6.3.5.10) compare
GFF2491 -3.5 -8.5 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
GFF215 -3.5 -18.9 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), C-terminal domain compare
GFF217 -3.5 -12.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
GFF2057 -3.5 -17.1 Ketol-acid reductoisomerase (NADP(+)) (EC 1.1.1.86) compare
GFF500 -3.5 -8.6 ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17) compare
GFF1592 -3.5 -8.1 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
GFF3322 -3.5 -15.9 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) @ Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
GFF3440 -3.5 -11.0 Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
GFF803 -3.4 -7.7 Chorismate synthase (EC 4.2.3.5) compare
GFF4169 -3.4 -4.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
GFF3277 -3.4 -15.9 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
GFF3058 -3.4 -13.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
GFF1972 -3.4 -11.9 Homoserine kinase (EC 2.7.1.39) compare
GFF3458 -3.4 -16.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
GFF3305 -3.4 -11.6 Histidinol-phosphatase [alternative form] (EC 3.1.3.15) compare
GFF1627 -3.4 -8.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
GFF776 -3.4 -18.9 RNA polymerase sigma-54 factor RpoN compare
GFF4764 -3.3 -16.6 Threonine synthase (EC 4.2.3.1) compare
GFF1625 -3.3 -16.0 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
GFF2007 -3.3 -22.3 Phosphoenolpyruvate-protein phosphotransferase, nitrogen regulation associated compare
GFF824 -3.3 -7.3 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
GFF818 -3.3 -9.8 Phosphoserine aminotransferase (EC 2.6.1.52) compare
GFF826 -3.3 -8.9 Cobalamin synthase (EC 2.7.8.26) compare
GFF2054 -3.3 -19.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
GFF1490 -3.3 -15.2 Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) compare
GFF1053 -3.2 -14.8 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
GFF2628 -3.2 -11.7 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
GFF3455 -3.2 -15.6 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
GFF3534 -3.2 -14.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
GFF3793 -3.2 -13.0 Argininosuccinate lyase (EC 4.3.2.1) compare
GFF3336 -3.2 -5.3 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) compare
GFF1424 -3.2 -18.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
GFF878 -3.2 -15.3 Aerobic cobaltochelatase CobN subunit (EC 6.6.1.2) compare
GFF633 -3.2 -17.7 Homoserine dehydrogenase (EC 1.1.1.3) compare
GFF814 -3.2 -16.7 Adenylosuccinate synthetase (EC 6.3.4.4) compare
GFF1626 -3.2 -5.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
GFF2468 -3.1 -10.9 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
GFF2404 -3.1 -16.4 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) compare
GFF765 -3.1 -23.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
GFF2481 -3.1 -12.4 Prephenate dehydratase (EC 4.2.1.51) compare
GFF1148 -3.1 -17.6 Nitrogen regulation protein NR(I), GlnG (=NtrC) compare
GFF828 -3.1 -7.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
GFF3697 -3.1 -15.9 Argininosuccinate synthase (EC 6.3.4.5) compare
GFF2060 -3.1 -18.0 2-isopropylmalate synthase (EC 2.3.3.13) compare
GFF763 -3.1 -15.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
GFF403 -3.1 -14.8 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF2370 -3.1 -16.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
GFF3537 -3.1 -13.7 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
GFF952 -3.1 -14.4 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
GFF2630 -3.1 -20.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
GFF1678 -3.0 -5.0 Ferredoxin, 2Fe-2S compare
GFF3061 -3.0 -12.4 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
GFF3818 -3.0 -6.4 Phosphocarrier protein, nitrogen regulation associated compare
GFF1149 -3.0 -12.8 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
GFF3746 -3.0 -10.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
GFF2056 -2.9 -12.6 Acetolactate synthase small subunit (EC 2.2.1.6) compare
GFF2789 -2.9 -10.2 N-acetylglutamate kinase (EC 2.7.2.8) compare
GFF1454 -2.9 -6.2 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) compare
GFF3062 -2.9 -14.4 Imidazole glycerol phosphate synthase cyclase subunit compare
GFF1299 -2.9 -5.8 N5-carboxyaminoimidazole ribonucleotide mutase (EC 5.4.99.18) compare
GFF2901 -2.9 -4.8 HflC protein compare
GFF2270 -2.9 -11.9 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
GFF879 -2.9 -10.1 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
GFF1891 -2.9 -14.5 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
GFF825 -2.9 -8.9 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
GFF2311 -2.8 -3.4 Transcriptional regulator, GntR family compare
GFF3242 -2.8 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs compare
GFF1668 -2.8 -9.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
GFF3060 -2.8 -10.2 Imidazole glycerol phosphate synthase amidotransferase subunit HisH compare
GFF3241 -2.8 -13.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
GFF1593 -2.8 -5.9 Phosphogluconate dehydratase (EC 4.2.1.12) compare
GFF3434 -2.8 -4.6 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
GFF233 -2.8 -15.9 'Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II' transl_table=11 compare
GFF646 -2.8 -15.2 Aspartate aminotransferase (EC 2.6.1.1) compare
GFF719 -2.7 -3.7 hypothetical protein compare
GFF816 -2.7 -12.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
GFF3795 -2.7 -11.8 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
GFF785 -2.7 -18.2 Ammonium transporter compare
GFF120 -2.6 -13.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
GFF1909 -2.6 -10.6 Chorismate mutase I (EC 5.4.99.5) compare
GFF5413 -2.5 -4.9 Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4) compare
GFF379 -2.5 -5.1 Tim44-like domain protein compare
GFF234 -2.5 -3.3 hypothetical protein compare
GFF4947 -2.5 -13.9 Glutamate N-acetyltransferase (EC 2.3.1.35) @ N-acetylglutamate synthase (EC 2.3.1.1) compare
GFF3439 -2.4 -5.7 Phosphoribosylformylglycinamidine synthase, PurS subunit (EC 6.3.5.3) compare
GFF2369 -2.4 -11.6 hypothetical protein compare
GFF3059 -2.4 -7.5 hypothetical protein compare
GFF2077 -2.3 -3.6 Pyruvate dehydrogenase E1 component alpha subunit (EC 1.2.4.1) compare
GFF784 -2.3 -5.2 Nitrogen regulatory protein P-II, GlnK compare
GFF4076 -2.2 -6.4 Two-component transcriptional response regulator, LuxR family compare
GFF4760 -2.1 -3.9 tRNA-modifying protein YgfZ compare
GFF2079 -2.1 -5.9 Enolase (EC 4.2.1.11) compare
GFF3291 -2.1 -10.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
GFF2900 -2.0 -3.1 HflK protein compare
GFF5255 -2.0 -8.9 Mobilization protein MobA @ Conjugal transfer protein TraA compare
GFF3770 -2.0 -3.0 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase II (EC 2.5.1.54) compare
GFF148 -2.0 -5.1 ATP-dependent protease subunit HslV (EC 3.4.25.2) compare
GFF2891 -1.9 -3.1 putative TonB-dependent receptor compare
GFF1460 -1.8 -5.9 glycoside hydrolase, family 25 compare
GFF4800 -1.8 -3.2 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) compare
GFF2286 -1.8 -9.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
GFF2076 -1.7 -2.6 Pyruvate dehydrogenase E1 component beta subunit (EC 1.2.4.1) compare
GFF1746 -1.7 -5.6 Efflux ABC transporter for glutathione/L-cysteine, essential for assembly of bd-type respiratory oxidases => CydD subunit compare
GFF1583 -1.7 -2.3 6-phosphogluconolactonase (EC 3.1.1.31), eukaryotic type compare
GFF5078 -1.7 -4.0 hypothetical protein compare
GFF1851 -1.7 -7.4 Precorrin-6A synthase (deacetylating) (EC 2.1.1.152) compare
GFF5252 -1.7 -4.4 Prevent host death protein, Phd antitoxin compare
GFF1300 -1.7 -6.7 Phosphoglycerate mutase (EC 5.4.2.11) compare
GFF1852 -1.7 -7.4 Hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolyzing) (EC 6.3.5.9) compare
GFF2787 -1.7 -4.7 Cell division integral membrane protein, YggT and half-length relatives compare
GFF4211 -1.7 -3.0 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) compare
GFF5249 -1.6 -4.5 hypothetical protein compare
GFF817 -1.6 -4.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
GFF3323 -1.6 -7.6 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) compare
GFF147 -1.6 -5.7 ATP-dependent hsl protease ATP-binding subunit HslU compare
GFF1856 -1.5 -6.4 Precorrin-6A reductase (EC 1.3.1.54) compare
GFF2053 -1.5 -4.1 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF1853 -1.5 -7.1 Precorrin-4 C(11)-methyltransferase (EC 2.1.1.133) compare
GFF4103 -1.5 -1.9 Peptide chain release factor N(5)-glutamine methyltransferase (EC 2.1.1.297) compare
GFF5247 -1.5 -10.6 hypothetical protein compare
GFF2132 -1.4 -9.4 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
GFF2293 -1.4 -4.1 Inner membrane protein YbhL compare
GFF5 -1.4 -2.9 DNA-binding protein compare
GFF142 -1.4 -10.6 Polyhydroxyalkanoic acid synthase compare
GFF4225 -1.4 -2.0 hypothetical protein compare
GFF3927 -1.4 -4.3 hypothetical protein compare
GFF1150 -1.4 -5.6 tRNA-dihydrouridine synthase DusB compare
GFF5248 -1.4 -5.2 hypothetical protein compare
GFF2890 -1.4 -3.3 PKHD-type hydroxylase YbiX compare
GFF2269 -1.4 -5.5 NLP/P60 family lipoprotein compare
GFF2034 -1.3 -7.4 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
GFF5251 -1.3 -4.3 Death on curing protein, Doc toxin compare
GFF3564 -1.3 -2.6 hypothetical protein compare
GFF645 -1.3 -10.2 Polyhydroxyalkanoic acid synthase compare
GFF5254 -1.3 -5.1 Mobilization protein compare
GFF3783 -1.3 -7.2 L-aspartate oxidase (EC 1.4.3.16) compare
GFF184 -1.3 -5.1 Alkyl hydroperoxide reductase protein C (EC 1.11.1.15) compare
GFF1858 -1.3 -3.9 Precorrin-2 C(20)-methyltransferase (EC 2.1.1.130) compare
GFF1855 -1.3 -5.8 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] (EC 2.1.1.132) compare
GFF1764 -1.3 -2.5 Outer membrane protein A precursor compare
GFF319 -1.2 -3.3 Intracellular septation protein IspA compare
GFF3819 -1.2 -2.6 PTS system permease (IIAMan), nitrogen regulatory IIA protein compare
GFF4438 -1.2 -6.3 Plasmid replication protein RepA compare
GFF950 -1.1 -2.6 hypothetical protein compare
GFF1859 -1.1 -4.0 Precorrin-8X methylmutase (EC 5.4.99.61) compare
GFF644 -1.1 -3.4 hypothetical protein compare
GFF3569 -1.1 -4.1 hypothetical protein compare
GFF4075 -1.1 -7.3 Two-component system sensor histidine kinase compare
GFF4171 -1.1 -4.1 Phosphoenolpyruvate synthase regulatory protein compare
GFF4297 -1.1 -2.6 hypothetical protein compare
GFF4767 -1.1 -6.7 Cytochrome c oxidase polypeptide III (EC 1.9.3.1) compare
GFF1679 -1.1 -5.6 Cysteine desulfurase (EC 2.8.1.7) compare
GFF282 -1.0 -3.8 hypothetical protein compare
GFF492 -1.0 -2.8 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) compare
GFF276 -1.0 -4.1 hypothetical protein compare
GFF2893 -1.0 -7.2 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
GFF1747 -1.0 -3.3 hypothetical protein compare
GFF668 -1.0 -4.3 Rrf2 family transcriptional regulator compare
GFF949 -1.0 -4.5 hypothetical protein compare
GFF1854 -1.0 -3.6 Cobalamin biosynthesis protein CobE compare
GFF243 -1.0 -4.4 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
GFF5253 -1.0 -4.9 hypothetical protein compare
GFF3048 -1.0 -3.6 Two-component nitrogen fixation transcriptional regulator FixJ compare
GFF246 -1.0 -4.8 Quinolinate synthetase (EC 2.5.1.72) compare
GFF5079 -1.0 -5.5 hypothetical protein compare
GFF4130 -1.0 -3.0 Chromosome (plasmid) partitioning protein ParA compare
GFF1857 -1.0 -4.2 Precorrin-3B C(17)-methyltransferase (EC 2.1.1.131) compare
GFF3064 -1.0 -3.5 Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
GFF3760 -1.0 -5.5 Ubiquinol-cytochrome C reductase, cytochrome C1 subunit compare
GFF659 -1.0 -3.5 Phosphohistidine phosphatase SixA compare
GFF251 -1.0 -3.6 Site-specific tyrosine recombinase XerC compare
GFF820 -0.9 -2.3 hypothetical protein compare
GFF3758 -0.9 -5.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
GFF3567 -0.9 -3.3 hypothetical protein compare
GFF3576 -0.9 -4.6 hypothetical protein compare
GFF5295 -0.9 -3.4 hypothetical protein compare
GFF33 -0.9 -1.6 hypothetical protein compare
GFF1921 -0.9 -6.2 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) compare
GFF2593 -0.9 -4.8 hypothetical protein compare
GFF2322 -0.9 -2.6 hypothetical protein compare
GFF2412 -0.9 -3.6 Flp pilus assembly protein, pilin Flp compare
GFF2409 -0.9 -2.3 hypothetical protein compare
GFF2902 -0.9 -3.3 HtrA protease/chaperone protein compare
GFF1344 -0.9 -1.0 hypothetical protein compare
GFF4777 -0.9 -6.1 Signal peptidase I (EC 3.4.21.89) compare
GFF4772 -0.9 -6.3 Cytochrome c oxidase polypeptide II (EC 1.9.3.1) compare
GFF4055 -0.9 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
GFF582 -0.9 -2.4 NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13) compare


Specific Phenotypes

None in this experiment

For Sphingobium sp. HT1-2 in carbon and nitrogen source experiments

For carbon and nitrogen source Sucrose across organisms