Experiment set1S25 for Rhodanobacter sp. FW510-T8

Compare to:

R2A_PIPES with Nickel (II) chloride hexahydrate 424 uM

200 most important genes:

  gene name fitness t score description  
OKGIIK_13570 thrC -4.3 -2.8 threonine synthase compare
OKGIIK_07300 -4.1 -2.8 carbamoyl phosphate synthase small subunit compare
OKGIIK_10175 rseP -3.7 -2.5 RIP metalloprotease RseP compare
OKGIIK_01155 cpsB -3.3 -4.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
OKGIIK_03000 degQ -3.1 -9.0 peptidase S1 compare
OKGIIK_10125 glnD -3.1 -2.9 [protein-PII] uridylyltransferase compare
OKGIIK_11105 baeS -3.0 -4.1 sensor histidine kinase compare
OKGIIK_13750 purD -3.0 -2.0 phosphoribosylamine--glycine ligase compare
OKGIIK_02315 purM -2.9 -3.9 phosphoribosylformylglycinamidine cyclo-ligase compare
OKGIIK_09225 -2.8 -4.3 RecBCD enzyme subunit RecC compare
OKGIIK_07870 rnc -2.8 -2.7 ribonuclease III compare
OKGIIK_11505 purL -2.8 -3.8 phosphoribosylformylglycinamidine synthase compare
OKGIIK_12965 -2.8 -5.8 glutamate--cysteine ligase compare
OKGIIK_05570 purF -2.7 -3.7 amidophosphoribosyltransferase compare
OKGIIK_12885 -2.7 -3.0 hypothetical protein compare
OKGIIK_05630 elaC -2.6 -3.9 Ribonuclease BN, tRNA processing enzyme compare
OKGIIK_11415 ldcA -2.6 -5.1 muramoyltetrapeptide carboxypeptidase compare
OKGIIK_06870 hflD -2.6 -6.1 high frequency lysogenization protein HflD compare
OKGIIK_03865 -2.6 -3.0 ferredoxin compare
OKGIIK_07255 -2.5 -2.7 LapA-dom domain-containing protein compare
OKGIIK_01165 rfbC -2.5 -5.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
OKGIIK_11075 gshB -2.5 -5.4 glutathione synthase compare
OKGIIK_01060 gap -2.4 -6.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
OKGIIK_14540 -2.4 -1.9 DUF2282 domain-containing protein compare
OKGIIK_00990 -2.4 -3.1 TonB-dependent copper receptor compare
OKGIIK_02260 raiA -2.4 -11.3 ribosomal subunit interface protein compare
OKGIIK_01310 gcvH -2.3 -5.1 glycine cleavage system protein GcvH compare
OKGIIK_05615 -2.3 -5.1 DUF6165 domain-containing protein compare
OKGIIK_11965 mscL -2.3 -1.7 large-conductance mechanosensitive channel protein MscL compare
OKGIIK_03430 -2.2 -5.1 N-acetylmuramoyl-L-alanine amidase compare
OKGIIK_09515 gph -2.2 -5.3 phosphoglycolate phosphatase compare
OKGIIK_06880 -2.2 -1.5 Phosphatase NudJ compare
OKGIIK_11370 -2.1 -2.7 Hemin transporter compare
OKGIIK_00795 ycgM -2.1 -6.5 2-keto-4-pentenoate hydratase compare
OKGIIK_01845 kup -2.1 -3.4 potassium uptake protein compare
OKGIIK_14345 nagA -2.1 -7.1 N-acetylglucosamine-6-phosphate deacetylase compare
OKGIIK_16565 mgtA -2.1 -6.0 magnesium-translocating P-type ATPase compare
OKGIIK_07250 lapB -2.1 -7.6 lipopolysaccharide assembly protein LapB compare
OKGIIK_06755 rnr -2.1 -12.7 ribonuclease R compare
OKGIIK_06585 ompA -2.0 -8.8 flagellar motor protein MotB compare
OKGIIK_14565 -2.0 -1.4 Lipid A 3-O-deacylase (PagL) compare
OKGIIK_01240 -2.0 -3.7 EamA domain-containing protein compare
OKGIIK_05620 rfaF -2.0 -5.3 ADP-heptose--LPS heptosyltransferase compare
OKGIIK_09975 -2.0 -9.1 Aminoglycoside phosphotransferase compare
OKGIIK_09995 yajC -2.0 -2.9 preprotein translocase subunit YajC compare
OKGIIK_11110 ompR -1.9 -6.9 DNA-binding response regulator compare
OKGIIK_01780 -1.9 -4.0 NAD+ synthase compare
OKGIIK_16060 gpmA -1.9 -4.2 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
OKGIIK_07900 rpoE -1.9 -7.8 RNA polymerase sigma factor RpoE compare
OKGIIK_15695 -1.8 -6.8 MFS transporter compare
OKGIIK_07295 carB -1.8 -4.3 carbamoyl-phosphate synthase large subunit compare
OKGIIK_16630 -1.8 -6.0 hypothetical protein compare
OKGIIK_07140 rlmN -1.7 -2.5 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
OKGIIK_11445 ettA -1.7 -6.8 energy-dependent translational throttle protein EttA compare
OKGIIK_07005 asnB -1.7 -7.0 asparagine synthase B compare
OKGIIK_01110 pgk -1.6 -5.0 phosphoglycerate kinase compare
OKGIIK_14160 -1.6 -5.6 ABC transporter ATP-binding protein compare
OKGIIK_09020 adhE -1.6 -3.8 aldehyde dehydrogenase family protein compare
OKGIIK_03560 abcC -1.6 -3.8 methionine ABC transporter ATP-binding protein compare
OKGIIK_11440 glyA -1.6 -7.4 serine hydroxymethyltransferase compare
OKGIIK_01080 fba1 -1.5 -8.6 fructose-bisphosphate aldolase class I compare
OKGIIK_14175 -1.5 -9.3 Sensor protein QseC compare
OKGIIK_13565 thrB -1.5 -1.9 homoserine kinase compare
OKGIIK_13745 -1.5 -10.6 Type III secretion system lipoprotein chaperone (YscW) compare
OKGIIK_01195 -1.5 -3.5 ABC transporter, ATP-binding protein compare
OKGIIK_08010 -1.5 -7.2 Peptidylprolyl isomerase compare
OKGIIK_07125 -1.4 -2.9 Ancillary SecYEG translocon subunit compare
OKGIIK_06640 hflK -1.4 -5.6 FtsH protease activity modulator HflK compare
OKGIIK_00110 ctpA -1.4 -3.1 C-terminal processing protease CtpA/Prc, contains a PDZ domain compare
OKGIIK_02250 rapZ -1.4 -6.7 RNase adapter RapZ compare
OKGIIK_01270 -1.4 -1.6 Transcriptional regulator compare
OKGIIK_08775 -1.4 -1.4 hypothetical protein compare
OKGIIK_04850 trpA -1.4 -3.4 tryptophan synthase subunit alpha compare
OKGIIK_03030 -1.4 -2.6 DUF3301 domain-containing protein compare
OKGIIK_02255 hprK -1.4 -6.1 HPr(Ser) kinase/phosphatase compare
OKGIIK_11115 fiu -1.4 -2.1 Outer membrane receptor for monomeric catechols compare
OKGIIK_05210 -1.3 -2.0 HigA family addiction module antitoxin compare
OKGIIK_12705 pta -1.3 -2.7 NADP-dependent malic enzyme compare
OKGIIK_06645 hflC -1.3 -5.7 protease modulator HflC compare
OKGIIK_00755 pdhA -1.3 -1.2 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
OKGIIK_03555 metP -1.3 -4.2 metal ABC transporter permease compare
OKGIIK_02640 -1.3 -1.3 Chemotaxis protein compare
OKGIIK_11495 -1.3 -4.9 Glycosyl transferase family 2 compare
OKGIIK_01190 -1.3 -2.3 Transport permease protein compare
OKGIIK_04975 hisF -1.3 -3.8 imidazole glycerol phosphate synthase subunit HisF compare
OKGIIK_15045 -1.3 -3.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
OKGIIK_01170 rfbA -1.3 -6.1 glucose-1-phosphate thymidylyltransferase RfbA compare
OKGIIK_01175 rfbB -1.2 -7.0 dTDP-glucose 4,6-dehydratase compare
OKGIIK_06580 prpD -1.2 -4.2 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
OKGIIK_03795 -1.2 -7.7 Putative beta-barrel assembly-enhancing protease compare
OKGIIK_03550 nlpA -1.2 -3.6 methionine ABC transporter substrate-binding protein compare
OKGIIK_07040 smc -1.2 -2.1 chromosome segregation protein SMC compare
OKGIIK_08045 tig -1.2 -2.7 trigger factor compare
OKGIIK_01215 -1.1 -5.4 GDP-mannose 4,6 dehydratase compare
OKGIIK_06090 -1.1 -2.8 hypothetical protein compare
OKGIIK_14150 -1.1 -7.0 Alpha/beta hydrolase compare
OKGIIK_01790 rluD -1.1 -4.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
OKGIIK_14085 mtnX -1.1 -5.4 phosphatase compare
OKGIIK_09590 rplI -1.1 -1.9 50S ribosomal protein L9 compare
OKGIIK_12700 aceE -1.1 -7.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
OKGIIK_07240 flaA1 -1.1 -6.8 polysaccharide biosynthesis protein compare
OKGIIK_11065 ompR -1.1 -2.4 two-component system response regulator compare
OKGIIK_03320 -1.1 -2.6 GNAT family N-acetyltransferase compare
OKGIIK_14110 fabB -1.1 -3.3 3-oxoacyl-(acyl-carrier-protein) synthase compare
OKGIIK_09575 ypjD -1.1 -4.1 Cytochrome C assembly protein compare
OKGIIK_14155 -1.1 -3.6 Secretion protein HlyD compare
OKGIIK_14165 lolE -1.1 -7.0 ABC transporter permease compare
OKGIIK_13560 thrA -1.1 -3.4 homoserine dehydrogenase compare
OKGIIK_14025 mnhF -1.1 -1.4 K+/H+ antiporter subunit F compare
OKGIIK_08940 -1.1 -1.2 DUF4224 domain-containing protein compare
OKGIIK_04330 azlC -1.1 -2.0 putative branched-chain amino acid permease (azaleucine resistance) compare
OKGIIK_04970 hisA -1.1 -3.6 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
OKGIIK_00600 -1.1 -1.5 GPW-gp25 domain-containing protein compare
OKGIIK_07670 ccoP -1.1 -1.9 cytochrome-c oxidase, cbb3-type subunit III compare
OKGIIK_02070 -1.0 -2.2 hypothetical protein compare
OKGIIK_14825 -1.0 -2.2 SDR family NAD(P)-dependent oxidoreductase compare
OKGIIK_07895 -1.0 -1.8 Anti-anti-sigma factor compare
OKGIIK_14180 -1.0 -2.5 DNA-binding response regulator compare
OKGIIK_14170 -1.0 -6.0 TolC family protein compare
OKGIIK_01235 -1.0 -6.1 Glycosyl transferases group 1 compare
OKGIIK_12440 djlA -1.0 -2.7 co-chaperone DjlA compare
OKGIIK_06795 -1.0 -3.3 hypothetical protein compare
OKGIIK_15705 -1.0 -3.0 anhydro-N-acetylmuramic acid kinase compare
OKGIIK_06740 gcvP2 -1.0 -4.7 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain compare
OKGIIK_04845 trpB -1.0 -4.9 tryptophan synthase subunit beta compare
OKGIIK_01160 rfbD -1.0 -3.3 dTDP-4-dehydrorhamnose reductase compare
OKGIIK_02245 manX -1.0 -4.6 PTS fructose IIA subunit family protein compare
OKGIIK_04035 -1.0 -1.0 DeoR/GlpR family DNA-binding transcription regulator compare
OKGIIK_10620 -1.0 -1.1 acylphosphatase compare
OKGIIK_06280 -1.0 -2.2 Cobalt-zinc-cadmium resistance protein CzcD compare
OKGIIK_13440 -0.9 -4.6 type I restriction-modification system subunit M compare
OKGIIK_16560 -0.9 -3.0 hypothetical protein compare
OKGIIK_11740 -0.9 -5.5 LppC putative lipoprotein compare
OKGIIK_04705 dcd -0.9 -5.7 dCTP deaminase compare
OKGIIK_16835 aroQ -0.9 -2.5 type II 3-dehydroquinate dehydratase compare
OKGIIK_11030 -0.9 -5.7 P63C domain-containing protein compare
OKGIIK_12225 -0.9 -4.6 5-formyltetrahydrofolate cyclo-ligase compare
OKGIIK_11390 pgpA -0.9 -2.3 Phosphatidylglycerophosphatase A compare
OKGIIK_03230 -0.9 -1.9 hypothetical protein compare
OKGIIK_16035 -0.9 -2.8 Dolichyl-phosphate mannose synthase compare
OKGIIK_06565 prpB -0.9 -1.9 methylisocitrate lyase compare
OKGIIK_01445 -0.9 -0.9 hypothetical protein compare
OKGIIK_01220 -0.9 -6.4 Phosphomannomutase compare
OKGIIK_06095 -0.9 -2.0 (2Fe-2S)-binding protein compare
OKGIIK_16685 natB -0.9 -3.8 ABC transporter permease compare
OKGIIK_11725 mraZ -0.9 -2.8 division/cell wall cluster transcriptional repressor MraZ compare
OKGIIK_03885 panB -0.9 -1.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
OKGIIK_07885 -0.9 -4.0 Elongation factor 4 compare
OKGIIK_06890 clpA -0.9 -5.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
OKGIIK_01210 gmd -0.8 -5.5 GDP-mannose 4,6-dehydratase compare
OKGIIK_11330 lolD -0.8 -1.5 ABC transporter ATP-binding protein compare
OKGIIK_04805 aroC -0.8 -2.4 chorismate synthase compare
OKGIIK_15520 pgi -0.8 -2.2 glucose-6-phosphate isomerase compare
OKGIIK_15650 ftsN -0.8 -2.6 sporulation protein compare
OKGIIK_05430 -0.8 -2.1 Biopolymer transporter ExbD compare
OKGIIK_01285 fixX -0.8 -4.8 electron transfer flavoprotein-ubiquinone oxidoreductase compare
OKGIIK_03635 fabG -0.8 -4.9 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
OKGIIK_02935 -0.8 -2.1 hypothetical protein compare
OKGIIK_03065 yqjQ -0.8 -2.4 Short-chain dehydrogenase compare
OKGIIK_08100 -0.8 -3.5 Peptidase M23 compare
OKGIIK_11635 apaH -0.8 -2.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
OKGIIK_07365 -0.8 -2.2 RnfH family protein compare
OKGIIK_06915 pheA -0.8 -3.5 prephenate dehydratase compare
OKGIIK_14885 ompR -0.8 -2.7 DNA-binding response regulator compare
OKGIIK_07245 -0.8 -2.1 Glycosyl transferase family 4 compare
OKGIIK_14090 argD -0.8 -4.7 aspartate aminotransferase family protein compare
OKGIIK_01095 tkt -0.8 -3.1 transketolase compare
OKGIIK_12065 -0.8 -5.6 Penicillin-binding protein 1A compare
OKGIIK_02170 relA -0.8 -5.1 GTP diphosphokinase compare
OKGIIK_07430 secG -0.8 -2.7 preprotein translocase subunit SecG compare
OKGIIK_11525 -0.7 -2.3 Transporter compare
OKGIIK_04955 hisC -0.7 -4.3 histidinol-phosphate transaminase compare
OKGIIK_08705 -0.7 -0.8 hypothetical protein compare
OKGIIK_06910 serC -0.7 -4.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
OKGIIK_16915 rfaB -0.7 -4.4 glycosyl transferase compare
OKGIIK_16690 -0.7 -3.4 EF-hand domain-containing protein compare
OKGIIK_03875 pcnB -0.7 -2.7 tRNA nucleotidyltransferase/poly(A) polymerase compare
OKGIIK_12595 aceF -0.7 -1.8 dihydrolipoyllysine-residue acetyltransferase compare
OKGIIK_12950 -0.7 -3.9 ATP-dependent RNA helicase RhlB compare
OKGIIK_01320 -0.7 -1.9 Protein TonB compare
OKGIIK_11005 suhB -0.7 -1.9 Archaeal fructose-1,6-bisphosphatase or related enzyme, inositol monophosphatase family compare
OKGIIK_02980 -0.7 -2.7 ABC transporter ATP-binding protein compare
OKGIIK_11600 -0.7 -1.0 ATP:cob(I)alamin adenosyltransferase compare
OKGIIK_11035 -0.7 -0.7 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
OKGIIK_01305 gcvT -0.7 -1.3 glycine cleavage system aminomethyltransferase GcvT compare
OKGIIK_00470 -0.7 -1.4 Alanyl-tRNA synthetase compare
OKGIIK_03140 -0.7 -1.5 Sec-independent protein translocase protein TatA compare
OKGIIK_06315 -0.7 -1.9 Transposase compare
OKGIIK_04620 -0.7 -3.0 hypothetical protein compare
OKGIIK_04010 fTR1 -0.7 -1.9 High-affinity Fe2+/Pb2+ permease compare
OKGIIK_15125 fbp -0.7 -4.8 class 1 fructose-bisphosphatase compare
OKGIIK_11870 rimK -0.7 -2.6 30S ribosomal protein S6--L-glutamate ligase compare
OKGIIK_01405 -0.6 -1.7 DUF4442 domain-containing protein compare
OKGIIK_12125 mlaD -0.6 -3.8 outer membrane lipid asymmetry maintenance protein MlaD compare
OKGIIK_13525 ubiG -0.6 -3.6 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG compare
OKGIIK_03500 yajQ -0.6 -2.6 YajQ family cyclic di-GMP-binding protein compare
OKGIIK_05885 mtnA -0.6 -1.9 S-methyl-5-thioribose-1-phosphate isomerase compare
OKGIIK_10710 -0.6 -2.7 Putative NAD(P)H nitroreductase compare
OKGIIK_08845 -0.6 -1.7 hypothetical protein compare
OKGIIK_13340 glnK -0.6 -2.3 P-II family nitrogen regulator compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp. FW510-T8 in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms