Experiment set1S25 for Rhodanobacter sp. FW510-T8

Compare to:

R2A_PIPES with Nickel (II) chloride hexahydrate 424 uM

200 most detrimental genes:

  gene name fitness t score description  
OKGIIK_02875 +1.1 3.4 Flg-hook domain-containing protein compare
OKGIIK_15165 +1.1 1.8 hypothetical protein compare
OKGIIK_07855 +1.0 1.8 Histidine kinase compare
OKGIIK_00775 +0.9 2.6 MarR family transcriptional regulator compare
OKGIIK_00465 +0.9 2.1 Energy transducer TonB compare
OKGIIK_12765 mtnN +0.9 6.6 AMP nucleosidase compare
OKGIIK_07060 +0.8 2.7 hypothetical protein compare
OKGIIK_13980 Ile2_trna +0.7 1.6 tRNA-Ile2 compare
OKGIIK_10725 +0.6 1.9 Nucleotidyltransferase compare
OKGIIK_16360 +0.6 1.6 VanZ like family compare
OKGIIK_14855 dps +0.6 1.7 DNA starvation/stationary phase protection protein compare
OKGIIK_02725 +0.6 1.3 hypothetical protein compare
OKGIIK_02890 +0.6 3.3 Histidine kinase compare
OKGIIK_00350 +0.6 1.7 TonB-dependent receptor compare
OKGIIK_03295 +0.6 1.0 hypothetical protein compare
OKGIIK_06425 +0.6 1.4 Pseudouridine synthase compare
OKGIIK_12335 +0.6 1.7 YkuD domain-containing protein compare
OKGIIK_14985 +0.6 1.8 hypothetical protein compare
OKGIIK_16460 +0.6 1.4 hypothetical protein compare
OKGIIK_14660 merR +0.5 1.5 Hg(II)-responsive transcriptional regulator compare
OKGIIK_01640 +0.5 1.1 Oxidoreductase compare
OKGIIK_08880 +0.5 1.0 hypothetical protein compare
OKGIIK_03385 hflC +0.5 2.7 SPFH domain / Band 7 family compare
OKGIIK_05990 hxlR +0.5 1.9 transcriptional regulator compare
OKGIIK_03185 +0.5 1.7 DUF1863 domain-containing protein compare
OKGIIK_16420 +0.5 2.5 hypothetical protein compare
OKGIIK_13685 +0.5 2.5 DNA-3-methyladenine glycosylase compare
OKGIIK_11995 +0.5 2.4 efflux RND transporter periplasmic adaptor subunit compare
OKGIIK_02835 cheY +0.5 1.5 chemotaxis response regulator CheY compare
OKGIIK_13665 bioH +0.5 2.8 pimeloyl-ACP methyl ester esterase BioH compare
OKGIIK_09440 argB +0.5 3.0 acetylglutamate kinase compare
OKGIIK_07410 +0.5 2.3 Ribonuclease E compare
OKGIIK_12445 cytC553 +0.5 1.8 cytochrome C compare
OKGIIK_10670 +0.5 1.8 hypothetical protein compare
OKGIIK_00590 vgrG +0.5 1.5 baseplate assembly protein compare
OKGIIK_12850 +0.5 1.4 hypothetical protein compare
OKGIIK_00405 tsaA +0.5 1.8 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
OKGIIK_05395 +0.5 2.4 Oxidored-molyb domain-containing protein compare
OKGIIK_07160 paaJ +0.5 2.8 acetyl-CoA C-acyltransferase compare
OKGIIK_06725 rpoE +0.5 0.7 RNA polymerase subunit sigma-70 compare
OKGIIK_00530 +0.5 1.4 hypothetical protein compare
OKGIIK_16005 +0.5 1.5 Xanthomonadin biosynthesis protein compare
OKGIIK_14700 +0.5 1.0 Hexosyltransferase compare
OKGIIK_13360 copY +0.5 1.2 methicillin resistance protein compare
OKGIIK_01490 +0.4 1.5 hypothetical protein compare
OKGIIK_14275 +0.4 1.3 MarR family transcriptional regulator compare
OKGIIK_12035 moxR +0.4 2.3 AAA family ATPase compare
OKGIIK_12165 +0.4 2.2 DUF1631 domain-containing protein compare
OKGIIK_16390 +0.4 1.8 Epimerase compare
OKGIIK_11385 wcaG +0.4 2.0 NAD dependent epimerase/dehydratase family compare
OKGIIK_07540 mntH +0.4 2.8 iron transporter compare
OKGIIK_00855 +0.4 1.5 Cytochrome B compare
OKGIIK_04640 +0.4 1.7 phospholipid methyltransferase compare
OKGIIK_13350 yhbQ +0.4 0.7 GIY-YIG nuclease compare
OKGIIK_12085 uRH1 +0.4 1.2 nucleoside hydrolase compare
OKGIIK_14690 +0.4 2.3 Flavin-Reduct domain-containing protein compare
OKGIIK_08180 yurZ +0.4 1.2 alkylhydroperoxidase compare
OKGIIK_03115 +0.4 1.9 hypothetical protein compare
OKGIIK_08830 +0.4 1.2 hypothetical protein compare
OKGIIK_08650 +0.4 1.3 hypothetical protein compare
OKGIIK_05905 ibpA +0.4 0.6 heat-shock protein Hsp20 compare
OKGIIK_13160 +0.4 2.6 Phospholipase C compare
OKGIIK_09090 gloA +0.4 2.0 extradiol dioxygenase compare
OKGIIK_00720 ygjP +0.4 2.3 metal-dependent hydrolase compare
OKGIIK_02940 +0.4 1.8 DNA mismatch repair protein MutT compare
OKGIIK_14980 +0.4 1.3 DUF883 domain-containing protein compare
OKGIIK_02570 +0.4 1.9 Membrane assembly protein AsmA compare
OKGIIK_10025 +0.4 2.0 Multidrug ABC transporter ATP-binding protein compare
OKGIIK_13415 +0.4 1.1 SseB family protein compare
OKGIIK_00765 +0.4 2.7 Dihydroorotate dehydrogenase compare
OKGIIK_01620 +0.4 2.7 AraC family transcriptional regulator compare
OKGIIK_16895 nfnB +0.4 1.7 malonic semialdehyde reductase compare
OKGIIK_13910 +0.4 1.1 DNA-binding protein compare
OKGIIK_12340 +0.4 0.5 hypothetical protein compare
OKGIIK_10955 tesA +0.4 2.6 Lysophospholipase L1 or related esterase Includes spore coat protein LipC/YcsK compare
OKGIIK_00860 +0.4 1.9 DNA-binding response regulator compare
OKGIIK_03960 caiD +0.4 1.8 enoyl-CoA hydratase/isomerase family protein compare
OKGIIK_00905 +0.4 1.2 Electron transporter SenC compare
OKGIIK_14615 +0.4 0.7 Heavy metal transporter compare
OKGIIK_10270 +0.4 0.8 DUF615 domain-containing protein compare
OKGIIK_13870 +0.4 2.1 Ketosteroid isomerase-related protein compare
OKGIIK_05985 cysK +0.4 1.9 cysteine synthase A compare
OKGIIK_16195 +0.4 1.2 Methyltransferase compare
OKGIIK_00865 +0.4 1.4 Sensor protein QseC compare
OKGIIK_14655 merT +0.4 1.1 mercuric ion transporter MerT compare
OKGIIK_06825 +0.4 1.5 hypothetical protein compare
OKGIIK_16510 +0.4 1.2 DUF2244 domain-containing protein compare
OKGIIK_00565 +0.4 1.2 hypothetical protein compare
OKGIIK_03610 fadH +0.4 1.4 oxidoreductase compare
OKGIIK_10205 rnhB +0.4 1.6 ribonuclease HII compare
OKGIIK_07695 +0.3 2.3 Cardiolipin synthase B compare
OKGIIK_16040 +0.3 1.8 Ketoacyl-synth-N domain-containing protein compare
OKGIIK_17025 +0.3 0.8 peptidase S16 compare
OKGIIK_06325 xerD +0.3 2.0 integrase compare
OKGIIK_00480 +0.3 1.8 TfoX-N domain-containing protein compare
OKGIIK_11890 +0.3 1.0 Sulfur carrier protein ThiS compare
OKGIIK_15765 +0.3 1.2 hypothetical protein compare
OKGIIK_00520 +0.3 1.5 phage tail protein compare
OKGIIK_04775 herA +0.3 2.2 ATP-binding protein compare
OKGIIK_02010 +0.3 2.2 hypothetical protein compare
OKGIIK_11830 metF +0.3 2.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
OKGIIK_05595 +0.3 1.9 hypothetical protein compare
OKGIIK_15115 +0.3 1.7 hypothetical protein compare
OKGIIK_02795 fliP +0.3 1.4 flagellar type III secretion system pore protein FliP compare
OKGIIK_09930 +0.3 1.4 GNAT family N-acetyltransferase compare
OKGIIK_14780 +0.3 1.7 RNA polymerase subunit sigma-70 compare
OKGIIK_04630 rhaT +0.3 1.3 EamA family transporter compare
OKGIIK_04150 +0.3 0.8 Glucose-regulated metallo-peptidase M90 compare
OKGIIK_00585 +0.3 2.2 hypothetical protein compare
OKGIIK_02060 +0.3 1.1 hypothetical protein compare
OKGIIK_00275 +0.3 0.5 Antitoxin compare
OKGIIK_02175 +0.3 1.0 hypothetical protein compare
OKGIIK_01710 ompR +0.3 2.0 two-component system response regulator compare
OKGIIK_07795 +0.3 1.6 Peptidase M4 compare
OKGIIK_14740 +0.3 2.0 Glycosyl transferase compare
OKGIIK_01610 +0.3 1.5 Sulfurtransferase compare
OKGIIK_04270 +0.3 1.5 alkyl hydroperoxide reductase compare
OKGIIK_03330 citB +0.3 0.5 DNA-binding response regulator compare
OKGIIK_16075 +0.3 0.5 Peptidase C13 compare
OKGIIK_13155 +0.3 0.5 AsnC family transcriptional regulator compare
OKGIIK_11865 +0.3 1.6 hypothetical protein compare
OKGIIK_04940 yerC +0.3 0.6 TrpR , YerC/YecD compare
OKGIIK_00605 +0.3 2.1 Putative baseplate assembly protein compare
OKGIIK_03340 ccmA +0.3 1.4 ABC transporter ATP-binding protein compare
OKGIIK_14895 +0.3 1.4 hypothetical protein compare
OKGIIK_00540 +0.3 1.5 AAA family ATPase compare
OKGIIK_03265 +0.3 0.8 hypothetical protein compare
OKGIIK_11755 +0.3 1.1 Uracil-DNA glycosylase compare
OKGIIK_05735 pabC +0.3 1.8 aminodeoxychorismate lyase compare
OKGIIK_04890 +0.3 2.5 Cytochrome-c peroxidase compare
OKGIIK_05995 gstA +0.3 2.3 glutathione transferase GstA compare
OKGIIK_12875 +0.3 0.8 Histidine utilization protein HutD compare
OKGIIK_07290 greA +0.3 1.1 transcription elongation factor GreA compare
OKGIIK_01650 +0.3 1.1 Ketoglutarate semialdehyde dehydrogenase compare
OKGIIK_07490 +0.3 1.3 VOC family protein compare
OKGIIK_03640 gluQRS +0.3 1.6 tRNA glutamyl-Q(34) synthetase GluQRS compare
OKGIIK_12840 +0.3 2.0 Tetracycline resistance MFS efflux pump compare
OKGIIK_05145 +0.3 1.6 Phospholipase compare
OKGIIK_11190 +0.3 0.6 WGR domain-containing protein compare
OKGIIK_01475 +0.3 0.5 Response regulatory domain-containing protein compare
OKGIIK_10230 +0.3 1.7 Bulb-type lectin domain-containing protein compare
OKGIIK_08175 cysK +0.3 1.6 pyridoxal-5-phosphate-dependent protein subunit beta compare
OKGIIK_14355 mngR +0.3 0.8 GntR family transcriptional regulator compare
OKGIIK_14260 +0.3 1.6 MBL fold metallo-hydrolase compare
OKGIIK_07130 +0.3 1.4 DUF4115 domain-containing protein compare
OKGIIK_09070 +0.3 1.2 Pseudouridine synthase compare
OKGIIK_16335 +0.3 1.9 DUF6159 domain-containing protein compare
OKGIIK_15300 +0.3 2.0 hypothetical protein compare
OKGIIK_06520 +0.3 2.0 Transglycosylase compare
OKGIIK_04245 +0.3 1.6 TP-methylase domain-containing protein compare
OKGIIK_12195 cydX +0.3 0.4 cytochrome bd-I oxidase subunit CydX compare
OKGIIK_01625 +0.3 1.7 Hydroxyproline-2-epimerase compare
OKGIIK_00535 +0.3 1.4 Pvc16-N domain-containing protein compare
OKGIIK_04810 +0.3 1.1 D-glycerate dehydrogenase compare
OKGIIK_06690 +0.3 2.0 DUF262 domain-containing protein compare
OKGIIK_08400 +0.3 1.1 GYD family protein compare
OKGIIK_14505 ubiE +0.3 1.9 methyltransferase type 11 compare
OKGIIK_08670 +0.3 0.6 N-acetyltransferase domain-containing protein compare
OKGIIK_05505 cobU +0.3 1.3 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
OKGIIK_15080 +0.3 1.6 DUF2384 domain-containing protein compare
OKGIIK_07780 +0.3 1.3 Aldehyde oxidase compare
OKGIIK_15610 +0.3 1.3 EH domain-containing protein compare
OKGIIK_05760 pilZ +0.3 1.9 pilus assembly protein PilZ compare
OKGIIK_05520 +0.3 1.9 adenosylcobinamide-GDP ribazoletransferase compare
OKGIIK_11895 thiS +0.3 1.6 thiazole synthase compare
OKGIIK_08265 +0.3 1.0 Bacterial archaeo-eukaryotic release factor family 12 compare
OKGIIK_04930 +0.3 1.0 30S ribosomal protein THX compare
OKGIIK_10210 +0.3 1.5 hypothetical protein compare
OKGIIK_00760 tDO2 +0.3 1.6 Tryptophan 2,3-dioxygenase (vermilion) compare
OKGIIK_08005 +0.3 1.9 Lytic transglycosylase compare
OKGIIK_14950 +0.3 1.7 Efflux RND transporter periplasmic adaptor subunit compare
OKGIIK_10840 +0.3 1.7 Transposase compare
OKGIIK_08335 +0.3 1.1 Transposase IS116/IS110/IS902 family compare
OKGIIK_12560 dinB +0.3 1.0 DNA polymerase IV compare
OKGIIK_02085 +0.3 1.4 hypothetical protein compare
OKGIIK_04765 greB +0.3 1.1 transcription elongation factor GreB compare
OKGIIK_02105 +0.3 2.0 amino acid permease compare
OKGIIK_00560 +0.3 1.3 DUF4157 domain-containing protein compare
OKGIIK_04435 hflC +0.3 1.4 SPFH domain / Band 7 family compare
OKGIIK_11645 +0.3 1.8 M23 family peptidase compare
OKGIIK_02385 purR +0.3 1.5 LacI family transcriptional regulator compare
OKGIIK_09215 +0.3 0.5 YCII domain-containing protein compare
OKGIIK_08365 adaA +0.3 1.3 Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains compare
OKGIIK_14010 +0.3 1.7 McrBC 5-methylcytosine restriction system component compare
OKGIIK_05965 cysI +0.3 1.7 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
OKGIIK_04485 +0.3 0.6 hypothetical protein compare
OKGIIK_08870 +0.2 0.8 hypothetical protein compare
OKGIIK_00105 lipA +0.2 1.3 lipoyl synthase compare
OKGIIK_16450 msrC +0.2 1.4 diguanylate cyclase compare
OKGIIK_04995 +0.2 1.1 cupin compare
OKGIIK_05260 moaA +0.2 1.4 GTP 3',8-cyclase MoaA compare
OKGIIK_05380 modA +0.2 1.5 substrate-binding domain-containing protein compare
OKGIIK_04445 +0.2 1.4 hypothetical protein compare
OKGIIK_13335 ubiK +0.2 0.5 Ubiquinone biosynthesis accessory factor UbiK compare
OKGIIK_14705 +0.2 0.8 Glycosyl transferase compare
OKGIIK_12900 ychJ +0.2 1.3 UPF0225 protein XHC_4340 compare
OKGIIK_07690 +0.2 2.0 Acetyl-CoA hydrolase compare
OKGIIK_16700 +0.2 1.3 Recombinase RmuC compare
OKGIIK_00525 +0.2 0.9 PEROXIDASE-4 domain-containing protein compare
OKGIIK_08630 +0.2 1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp. FW510-T8 in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms