Experiment set1S25 for Azospirillum sp. SherDot2

Compare to:

NL-CCM, start OD=0.1

200 most important genes:

  gene name fitness t score description  
MPMX19_00705 -2.4 -2.9 Cell division coordinator CpoB compare
MPMX19_00478 -2.4 -2.8 putative protein RP812 compare
MPMX19_03906 -2.2 -12.7 Pca regulon regulatory protein compare
MPMX19_00841 -2.2 -2.9 Holo-[acyl-carrier-protein] synthase compare
MPMX19_04115 -1.9 -1.7 Sensor histidine kinase RcsC compare
MPMX19_00838 -1.9 -3.3 GTP pyrophosphokinase rsh compare
MPMX19_01395 -1.8 -2.0 hypothetical protein compare
MPMX19_02303 -1.8 -3.1 hypothetical protein compare
MPMX19_01247 -1.6 -1.8 Transcriptional regulatory protein DegU compare
MPMX19_00128 -1.6 -10.4 hypothetical protein compare
MPMX19_00046 -1.6 -2.4 hypothetical protein compare
MPMX19_00126 -1.5 -3.2 hypothetical protein compare
MPMX19_04952 -1.5 -2.1 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_01597 -1.5 -2.5 23S rRNA (uridine(2479)-2'-O)-methyltransferase compare
MPMX19_01545 -1.5 -1.4 Lon protease compare
MPMX19_04408 -1.5 -2.6 tRNA1(Val) (adenine(37)-N6)-methyltransferase compare
MPMX19_01113 -1.5 -2.7 Adaptive-response sensory-kinase SasA compare
MPMX19_02402 -1.5 -2.1 hypothetical protein compare
MPMX19_00304 -1.5 -2.7 Phosphatidylcholine synthase compare
MPMX19_02981 -1.5 -4.7 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_00530 -1.4 -3.1 Orotate phosphoribosyltransferase compare
MPMX19_04610 -1.4 -3.1 putative enoyl-CoA hydratase 1 compare
MPMX19_03654 -1.3 -2.9 Fructokinase compare
MPMX19_01015 -1.3 -3.9 Anthranilate phosphoribosyltransferase compare
MPMX19_03722 -1.3 -2.0 hypothetical protein compare
MPMX19_01718 -1.3 -2.3 Ribosomal large subunit pseudouridine synthase C compare
MPMX19_04354 -1.3 -2.8 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_02674 -1.3 -1.9 NADH:quinone reductase compare
MPMX19_00714 -1.3 -5.6 Ferrous-iron efflux pump FieF compare
MPMX19_02657 -1.3 -10.4 Glutamate synthase [NADPH] large chain compare
MPMX19_01111 -1.2 -2.3 Sensory histidine kinase/phosphatase NtrB compare
MPMX19_01796 -1.2 -2.1 hypothetical protein compare
MPMX19_04429 -1.2 -3.7 N-acetylmuramoyl-L-alanine amidase AmiA compare
MPMX19_02207 -1.2 -2.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
MPMX19_00266 -1.2 -2.0 hypothetical protein compare
MPMX19_05773 -1.2 -3.0 Putative 1,2-phenylacetyl-CoA epoxidase, subunit D compare
MPMX19_02267 -1.1 -1.5 hypothetical protein compare
MPMX19_04835 -1.1 -2.2 hypothetical protein compare
MPMX19_03728 -1.1 -1.9 hypothetical protein compare
MPMX19_05449 -1.1 -2.6 hypothetical protein compare
MPMX19_06353 -1.1 -1.2 hypothetical protein compare
MPMX19_05442 -1.1 -2.3 Ribosomal large subunit pseudouridine synthase D compare
MPMX19_00906 -1.1 -7.0 Amidophosphoribosyltransferase compare
MPMX19_01054 -1.1 -4.1 Aspartate carbamoyltransferase compare
MPMX19_02057 -1.1 -3.0 hypothetical protein compare
MPMX19_02531 -1.1 -1.1 hypothetical protein compare
MPMX19_05521 -1.1 -2.4 Nitrogen regulatory protein P-II 2 compare
MPMX19_04864 -1.1 -2.0 hypothetical protein compare
MPMX19_05217 -1.1 -1.6 Flagellin compare
MPMX19_00182 -1.0 -2.0 hypothetical protein compare
MPMX19_02658 -1.0 -7.1 Glutamate synthase [NADPH] small chain compare
MPMX19_06762 -1.0 -2.1 Peptide deformylase compare
MPMX19_03252 -1.0 -2.6 hypothetical protein compare
MPMX19_05387 -1.0 -1.8 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
MPMX19_04000 -1.0 -2.5 Flagellar motor switch protein FliG compare
MPMX19_05144 -1.0 -2.1 hypothetical protein compare
MPMX19_04968 -1.0 -1.8 hypothetical protein compare
MPMX19_05298 -1.0 -3.6 Periplasmic [NiFeSe] hydrogenase large subunit compare
MPMX19_01714 -1.0 -1.5 tRNA-modifying protein YgfZ compare
MPMX19_05727 -0.9 -4.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX19_01586 -0.9 -2.4 hypothetical protein compare
MPMX19_06928 -0.9 -2.0 hypothetical protein compare
MPMX19_03389 -0.9 -2.7 Carbon monoxide dehydrogenase small chain compare
MPMX19_02031 -0.9 -1.2 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ compare
MPMX19_02002 -0.9 -2.4 hypothetical protein compare
MPMX19_05070 -0.9 -3.7 hypothetical protein compare
MPMX19_01084 -0.9 -3.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX19_00020 -0.9 -1.2 hypothetical protein compare
MPMX19_05686 -0.9 -2.2 Chemotaxis protein CheY compare
MPMX19_01330 -0.9 -2.4 3-mercaptopyruvate sulfurtransferase compare
MPMX19_05825 -0.9 -2.1 hypothetical protein compare
MPMX19_05221 -0.9 -2.5 hypothetical protein compare
MPMX19_05658 -0.9 -2.2 hypothetical protein compare
MPMX19_05314 -0.9 -1.1 hypothetical protein compare
MPMX19_06985 -0.9 -1.4 L-malyl-CoA/beta-methylmalyl-CoA lyase compare
MPMX19_01053 -0.9 -2.6 Dihydroorotase compare
MPMX19_00511 -0.9 -3.1 hypothetical protein compare
MPMX19_05915 -0.9 -1.7 Flagellar M-ring protein compare
MPMX19_03652 -0.9 -3.3 Sorbitol dehydrogenase compare
MPMX19_04996 -0.9 -1.8 hypothetical protein compare
MPMX19_00025 -0.9 -1.7 hypothetical protein compare
MPMX19_04958 -0.9 -2.2 Methyl-accepting chemotaxis protein compare
MPMX19_06422 -0.9 -2.6 hypothetical protein compare
MPMX19_02171 -0.9 -4.1 putative ABC transporter ATP-binding protein YejF compare
MPMX19_02573 -0.9 -2.1 Dihydrofolate reductase compare
MPMX19_01012 -0.8 -1.9 Cyclic pyranopterin monophosphate synthase compare
MPMX19_01811 -0.8 -1.9 hypothetical protein compare
MPMX19_04210 -0.8 -1.8 hypothetical protein compare
MPMX19_02054 -0.8 -2.1 hypothetical protein compare
MPMX19_03798 -0.8 -2.2 hypothetical protein compare
MPMX19_05872 -0.8 -2.0 Redox-sensitive transcriptional activator SoxR compare
MPMX19_03613 -0.8 -2.2 N-acetylglucosamine-6-phosphate deacetylase compare
MPMX19_00237 -0.8 -2.4 Cysteine synthase compare
MPMX19_06471 -0.8 -2.3 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_04118 -0.8 -1.7 Sensor histidine kinase RcsC compare
MPMX19_06014 -0.8 -3.9 Histidinol-phosphate aminotransferase compare
MPMX19_01277 -0.8 -4.1 hypothetical protein compare
MPMX19_06001 -0.8 -2.4 hypothetical protein compare
MPMX19_05252 -0.8 -2.2 Carbon monoxide dehydrogenase medium chain compare
MPMX19_05355 -0.8 -2.4 Transcriptional regulator SlyA compare
MPMX19_00795 -0.8 -2.9 Adaptive-response sensory-kinase SasA compare
MPMX19_05831 -0.8 -2.1 Protein/nucleic acid deglycase 2 compare
MPMX19_03116 -0.8 -1.8 Vitamin B12 import ATP-binding protein BtuD compare
MPMX19_01304 -0.8 -5.1 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX19_05016 -0.8 -1.3 Sensor histidine kinase RcsC compare
MPMX19_03297 -0.8 -1.7 hypothetical protein compare
MPMX19_05534 -0.8 -1.4 DNA gyrase inhibitor YacG compare
MPMX19_02902 -0.8 -1.9 hypothetical protein compare
MPMX19_05023 -0.8 -1.1 hypothetical protein compare
MPMX19_03548 -0.8 -2.9 Dihydroanticapsin 7-dehydrogenase compare
MPMX19_03972 -0.7 -2.3 Enolase compare
MPMX19_03200 -0.7 -2.5 Transcriptional regulatory protein LiaR compare
MPMX19_06508 -0.7 -2.0 Nitrilotriacetate monooxygenase component A compare
MPMX19_05389 -0.7 -2.8 Pyruvate kinase compare
MPMX19_02543 -0.7 -1.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX19_04985 -0.7 -1.1 HTH-type transcriptional regulator DmlR compare
MPMX19_00260 -0.7 -1.1 Hydrogen cyanide synthase subunit HcnC compare
MPMX19_02544 -0.7 -2.3 hypothetical protein compare
MPMX19_04893 -0.7 -2.3 hypothetical protein compare
MPMX19_02675 -0.7 -5.5 Phosphoenolpyruvate-dependent phosphotransferase system compare
MPMX19_03155 -0.7 -2.1 hypothetical protein compare
MPMX19_03469 -0.7 -1.9 hypothetical protein compare
MPMX19_05824 -0.7 -2.1 hypothetical protein compare
MPMX19_01560 -0.7 -1.6 3'-5' exonuclease DinG compare
MPMX19_01201 -0.7 -2.0 hypothetical protein compare
MPMX19_05207 -0.7 -1.1 Hemolysin secretion protein D, plasmid compare
MPMX19_01487 -0.7 -2.0 hypothetical protein compare
MPMX19_00887 -0.7 -1.4 hypothetical protein compare
MPMX19_03612 -0.7 -2.1 hypothetical protein compare
MPMX19_00748 -0.7 -1.6 Organic hydroperoxide resistance transcriptional regulator compare
MPMX19_06887 -0.7 -1.9 Adenine deaminase compare
MPMX19_01365 -0.7 -1.7 hypothetical protein compare
MPMX19_00201 -0.7 -2.7 hypothetical protein compare
MPMX19_02177 -0.7 -2.1 Succinylornithine transaminase/acetylornithine aminotransferase compare
MPMX19_01645 -0.7 -1.2 HTH-type transcriptional regulator GltC compare
MPMX19_03257 -0.7 -2.0 Glycine betaine/proline betaine transport system ATP-binding protein ProV compare
MPMX19_01834 -0.7 -1.0 hypothetical protein compare
MPMX19_06180 -0.7 -1.5 Sensor histidine kinase RegB compare
MPMX19_04948 -0.7 -1.0 HTH-type transcriptional regulator GltR compare
MPMX19_00319 -0.7 -0.9 hypothetical protein compare
MPMX19_01822 -0.7 -3.2 2-isopropylmalate synthase compare
MPMX19_05454 -0.7 -1.4 hypothetical protein compare
MPMX19_05362 -0.7 -1.3 hypothetical protein compare
MPMX19_02234 -0.7 -2.7 hypothetical protein compare
MPMX19_06546 -0.7 -1.7 hypothetical protein compare
MPMX19_04668 -0.7 -1.7 HTH-type transcriptional regulator DmlR compare
MPMX19_01445 -0.7 -1.6 hypothetical protein compare
MPMX19_05810 -0.7 -2.3 Methylated-DNA--protein-cysteine methyltransferase compare
MPMX19_03915 -0.7 -1.7 hypothetical protein compare
MPMX19_03552 -0.7 -1.7 hypothetical protein compare
MPMX19_05967 -0.7 -2.4 D-erythritol 1-phosphate dehydrogenase compare
MPMX19_02601 -0.7 -3.7 hypothetical protein compare
MPMX19_05930 -0.7 -1.7 Dipeptidyl-peptidase 6 compare
MPMX19_03329 -0.7 -1.6 hypothetical protein compare
MPMX19_05862 -0.7 -2.2 3-carboxy-cis,cis-muconate cycloisomerase compare
MPMX19_01492 -0.7 -2.4 RNA polymerase-binding transcription factor DksA compare
MPMX19_02862 -0.7 -2.4 hypothetical protein compare
MPMX19_00163 -0.6 -2.7 hypothetical protein compare
MPMX19_05850 -0.6 -0.9 hypothetical protein compare
MPMX19_01400 -0.6 -1.4 hypothetical protein compare
MPMX19_05170 -0.6 -2.8 Fe(3+) dicitrate transport ATP-binding protein FecE compare
MPMX19_05272 -0.6 -1.9 hypothetical protein compare
MPMX19_06258 -0.6 -2.1 hypothetical protein compare
MPMX19_02397 -0.6 -1.7 hypothetical protein compare
MPMX19_06272 -0.6 -0.7 hypothetical protein compare
MPMX19_01243 -0.6 -1.1 hypothetical protein compare
MPMX19_03042 -0.6 -2.1 hypothetical protein compare
MPMX19_05167 -0.6 -1.7 hypothetical protein compare
MPMX19_06102 -0.6 -1.8 Membrane-bound lytic murein transglycosylase C compare
MPMX19_06004 -0.6 -1.5 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_05241 -0.6 -1.9 hypothetical protein compare
MPMX19_05921 -0.6 -1.2 hypothetical protein compare
MPMX19_04903 -0.6 -2.0 hypothetical protein compare
MPMX19_04093 -0.6 -1.5 hypothetical protein compare
MPMX19_01321 -0.6 -1.8 tRNA-Cys compare
MPMX19_01342 -0.6 -1.5 hypothetical protein compare
MPMX19_06988 -0.6 -2.2 hypothetical protein compare
MPMX19_04218 -0.6 -2.8 Protein phosphatase PrpC compare
MPMX19_05160 -0.6 -2.6 hypothetical protein compare
MPMX19_02815 -0.6 -1.4 2-keto-4-pentenoate hydratase compare
MPMX19_06765 -0.6 -1.2 Hydrogen peroxide-inducible genes activator compare
MPMX19_03787 -0.6 -0.9 hypothetical protein compare
MPMX19_04119 -0.6 -1.1 hypothetical protein compare
MPMX19_06677 -0.6 -1.5 hypothetical protein compare
MPMX19_03251 -0.6 -2.3 hypothetical protein compare
MPMX19_00633 -0.6 -2.9 Intermembrane phospholipid transport system lipoprotein MlaA compare
MPMX19_01333 -0.6 -2.7 hypothetical protein compare
MPMX19_03772 -0.6 -1.9 hypothetical protein compare
MPMX19_03736 -0.6 -2.5 Cytochrome c2 compare
MPMX19_00066 -0.6 -1.0 hypothetical protein compare
MPMX19_01014 -0.6 -1.8 Indole-3-glycerol phosphate synthase compare
MPMX19_03212 -0.6 -1.3 hypothetical protein compare
MPMX19_02115 -0.6 -1.9 hypothetical protein compare
MPMX19_05065 -0.6 -1.3 Farnesyl diphosphate synthase compare
MPMX19_01630 -0.6 -1.9 Phosphoribosylamine--glycine ligase compare
MPMX19_02378 -0.6 -1.3 hypothetical protein compare
MPMX19_01955 -0.6 -0.9 Putative anti-sigma factor antagonist compare
MPMX19_01190 -0.6 -1.3 Response regulator receiver protein CpdR compare
MPMX19_03452 -0.6 -1.6 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_05796 -0.6 -2.1 HTH-type transcriptional repressor BdcR compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm experiments