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Metrics
Experiment set1S25 for
Azospirillum sp. SherDot2
Compare to:
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NL-CCM, start OD=0.1
200 most detrimental genes:
gene
name
fitness
t score
description
MPMX19
_03655
+1.4
4.0
hypothetical protein
compare
MPMX19
_00297
+1.1
2.2
4-carboxy-4-hydroxy-2-oxoadipate aldolase
compare
MPMX19
_06197
+1.0
1.7
hypothetical protein
compare
MPMX19
_06610
+0.9
1.9
hypothetical protein
compare
MPMX19
_02816
+0.9
1.7
3-oxoacyl-[acyl-carrier-protein] reductase FabG
compare
MPMX19
_05853
+0.9
3.7
Lipopolysaccharide export system ATP-binding protein LptB
compare
MPMX19
_06488
+0.9
2.8
Taurine-binding periplasmic protein
compare
MPMX19
_02466
+0.8
2.1
Octopine permease ATP-binding protein P
compare
MPMX19
_04682
+0.8
2.0
hypothetical protein
compare
MPMX19
_00544
+0.8
1.3
hypothetical protein
compare
MPMX19
_02136
+0.8
1.2
Phage shock protein A
compare
MPMX19
_06763
+0.7
2.3
hypothetical protein
compare
MPMX19
_05906
+0.7
1.9
hypothetical protein
compare
MPMX19
_05798
+0.7
2.1
HTH-type transcriptional repressor NanR
compare
MPMX19
_05106
+0.7
3.4
Glycine betaine uptake system ATP-binding protein YehX
compare
MPMX19
_05193
+0.7
1.8
Taurine-binding periplasmic protein
compare
MPMX19
_06526
+0.7
2.9
Putative aliphatic sulfonates transport permease protein SsuC
compare
MPMX19
_01067
+0.7
0.8
hypothetical protein
compare
MPMX19
_03724
+0.7
1.8
hypothetical protein
compare
MPMX19
_05505
+0.7
2.2
Leucine-responsive regulatory protein
compare
MPMX19
_02536
+0.7
2.2
hypothetical protein
compare
MPMX19
_01376
+0.7
2.0
hypothetical protein
compare
MPMX19
_01059
+0.7
1.1
hypothetical protein
compare
MPMX19
_05188
+0.7
2.2
Aliphatic sulfonates import ATP-binding protein SsuB
compare
MPMX19
_06456
+0.7
1.3
hypothetical protein
compare
MPMX19
_05656
+0.7
1.9
HTH-type transcriptional activator RhaR
compare
MPMX19
_00263
+0.7
1.9
hypothetical protein
compare
MPMX19
_03085
+0.6
1.5
Hydrogen peroxide-inducible genes activator
compare
MPMX19
_04687
+0.6
2.0
Atrazine chlorohydrolase
compare
MPMX19
_03073
+0.6
2.4
hypothetical protein
compare
MPMX19
_00208
+0.6
1.6
hypothetical protein
compare
MPMX19
_00334
+0.6
2.0
hypothetical protein
compare
MPMX19
_05581
+0.6
1.3
hypothetical protein
compare
MPMX19
_05575
+0.6
2.6
hypothetical protein
compare
MPMX19
_04205
+0.6
1.9
3-oxoacyl-[acyl-carrier-protein] reductase FabG
compare
MPMX19
_04518
+0.6
2.6
Acetyl-CoA:oxalate CoA-transferase
compare
MPMX19
_01614
+0.6
1.7
hypothetical protein
compare
MPMX19
_06506
+0.6
2.1
hypothetical protein
compare
MPMX19
_02538
+0.6
1.3
hypothetical protein
compare
MPMX19
_00664
+0.6
2.3
hypothetical protein
compare
MPMX19
_06967
+0.6
0.9
hypothetical protein
compare
MPMX19
_04095
+0.6
2.0
hypothetical protein
compare
MPMX19
_06989
+0.6
1.4
3-oxoacyl-[acyl-carrier-protein] reductase FabG
compare
MPMX19
_04863
+0.6
1.6
Transcriptional regulatory protein LnrK
compare
MPMX19
_01426
+0.6
1.0
hypothetical protein
compare
MPMX19
_06843
+0.6
2.1
hypothetical protein
compare
MPMX19
_06783
+0.6
2.6
5-keto-D-gluconate 5-reductase
compare
MPMX19
_06478
+0.6
2.7
hypothetical protein
compare
MPMX19
_04902
+0.6
2.8
hypothetical protein
compare
MPMX19
_06518
+0.6
2.9
Methionine import system permease protein MetP
compare
MPMX19
_00008
+0.6
2.0
hypothetical protein
compare
MPMX19
_02787
+0.6
2.1
(R)-benzylsuccinyl-CoA dehydrogenase
compare
MPMX19
_05430
+0.6
1.3
HTH-type transcriptional regulator DmlR
compare
MPMX19
_05989
+0.6
1.5
HTH-type transcriptional regulator HdfR
compare
MPMX19
_01479
+0.6
3.2
hypothetical protein
compare
MPMX19
_00675
+0.6
1.7
Peptidoglycan-associated lipoprotein
compare
MPMX19
_02613
+0.6
1.7
hypothetical protein
compare
MPMX19
_04286
+0.6
2.7
hypothetical protein
compare
MPMX19
_04145
+0.6
1.4
hypothetical protein
compare
MPMX19
_06463
+0.6
3.1
Hydroxycarboxylate dehydrogenase B
compare
MPMX19
_05551
+0.6
1.9
Chemotaxis protein CheY
compare
MPMX19
_05005
+0.6
2.1
hypothetical protein
compare
MPMX19
_06420
+0.5
2.0
hypothetical protein
compare
MPMX19
_06509
+0.5
1.7
Putative aliphatic sulfonates transport permease protein SsuC
compare
MPMX19
_01947
+0.5
2.2
Chemotaxis protein CheY
compare
MPMX19
_01073
+0.5
1.9
5'-nucleotidase
compare
MPMX19
_06768
+0.5
1.9
hypothetical protein
compare
MPMX19
_03523
+0.5
2.1
hypothetical protein
compare
MPMX19
_01454
+0.5
1.5
hypothetical protein
compare
MPMX19
_02735
+0.5
1.1
Sensor histidine kinase RcsC
compare
MPMX19
_05548
+0.5
2.2
D-methionine transport system permease protein MetI
compare
MPMX19
_06537
+0.5
2.5
NADH-dependent FMN reductase SfnF
compare
MPMX19
_06207
+0.5
1.6
hypothetical protein
compare
MPMX19
_01918
+0.5
0.9
tRNA-Ala
compare
MPMX19
_04520
+0.5
2.5
hypothetical protein
compare
MPMX19
_00240
+0.5
1.2
hypothetical protein
compare
MPMX19
_02041
+0.5
1.2
Protein YciI
compare
MPMX19
_03396
+0.5
2.1
High-affinity branched-chain amino acid transport ATP-binding protein LivF
compare
MPMX19
_04686
+0.5
2.8
Maleate isomerase
compare
MPMX19
_00294
+0.5
1.5
Adaptive-response sensory-kinase SasA
compare
MPMX19
_05011
+0.5
2.4
tRNA (cytidine(34)-2'-O)-methyltransferase
compare
MPMX19
_00846
+0.5
1.5
hypothetical protein
compare
MPMX19
_06656
+0.5
4.2
Dodecaprenyl-phosphate galacturonate synthase
compare
MPMX19
_04726
+0.5
1.8
Glycine betaine/choline transport system permease protein OusW
compare
MPMX19
_06914
+0.5
1.3
Acyl-CoA dehydrogenase FadE27
compare
MPMX19
_06759
+0.5
1.5
Taurine import ATP-binding protein TauB
compare
MPMX19
_06770
+0.5
2.8
NAD-dependent glycerol dehydrogenase
compare
MPMX19
_04265
+0.5
1.6
Aliphatic sulfonates import ATP-binding protein SsuB
compare
MPMX19
_05177
+0.5
1.6
Glyoxylate/hydroxypyruvate reductase A
compare
MPMX19
_00492
+0.5
2.0
Cobalamin biosynthesis protein CbiB
compare
MPMX19
_01203
+0.5
1.9
hypothetical protein
compare
MPMX19
_02604
+0.5
2.3
Mycothiol acetyltransferase
compare
MPMX19
_06901
+0.5
2.7
Alpha-ketoglutaric semialdehyde dehydrogenase
compare
MPMX19
_04620
+0.5
1.9
HTH-type transcriptional regulator CynR
compare
MPMX19
_03072
+0.5
0.7
hypothetical protein
compare
MPMX19
_01757
+0.5
2.1
Ferredoxin--NADP reductase
compare
MPMX19
_04096
+0.5
2.5
hypothetical protein
compare
MPMX19
_00132
+0.5
2.2
hypothetical protein
compare
MPMX19
_05618
+0.5
1.6
putative manganese efflux pump MntP
compare
MPMX19
_04570
+0.5
1.9
ECF RNA polymerase sigma factor SigF
compare
MPMX19
_03959
+0.5
1.2
hypothetical protein
compare
MPMX19
_05190
+0.5
2.2
putative malonic semialdehyde reductase RutE
compare
MPMX19
_03694
+0.5
1.1
hypothetical protein
compare
MPMX19
_05734
+0.5
2.2
Tol-Pal system protein TolQ
compare
MPMX19
_03470
+0.5
1.3
Phosphatidylinositol phosphate synthase
compare
MPMX19
_05226
+0.5
2.5
Oxidoreductase UcpA
compare
MPMX19
_06096
+0.5
2.7
hypothetical protein
compare
MPMX19
_02780
+0.4
2.2
hypothetical protein
compare
MPMX19
_02608
+0.4
1.9
hypothetical protein
compare
MPMX19
_04161
+0.4
0.9
hypothetical protein
compare
MPMX19
_00212
+0.4
3.6
Nitrogen fixation regulation protein FixK
compare
MPMX19
_02679
+0.4
1.1
hypothetical protein
compare
MPMX19
_02295
+0.4
2.3
Periplasmic nitrate reductase, electron transfer subunit
compare
MPMX19
_05203
+0.4
1.5
hypothetical protein
compare
MPMX19
_00923
+0.4
1.4
hypothetical protein
compare
MPMX19
_01596
+0.4
1.6
hypothetical protein
compare
MPMX19
_04100
+0.4
1.6
hypothetical protein
compare
MPMX19
_02817
+0.4
0.9
Serine 3-dehydrogenase
compare
MPMX19
_06195
+0.4
1.3
hypothetical protein
compare
MPMX19
_04664
+0.4
1.9
hypothetical protein
compare
MPMX19
_06774
+0.4
2.1
hypothetical protein
compare
MPMX19
_01460
+0.4
1.8
hypothetical protein
compare
MPMX19
_06193
+0.4
1.1
Flagellar hook-basal body complex protein FliE
compare
MPMX19
_00574
+0.4
1.8
hypothetical protein
compare
MPMX19
_06924
+0.4
1.7
hypothetical protein
compare
MPMX19
_04225
+0.4
2.0
hypothetical protein
compare
MPMX19
_01050
+0.4
1.0
hypothetical protein
compare
MPMX19
_04669
+0.4
1.3
Glucose 1-dehydrogenase
compare
MPMX19
_00204
+0.4
1.5
hypothetical protein
compare
MPMX19
_02580
+0.4
1.3
Acetyltransferase
compare
MPMX19
_05762
+0.4
1.3
hypothetical protein
compare
MPMX19
_03924
+0.4
1.2
hypothetical protein
compare
MPMX19
_03642
+0.4
1.2
hypothetical protein
compare
MPMX19
_06642
+0.4
3.5
Ubiquinone biosynthesis O-methyltransferase, mitochondrial
compare
MPMX19
_02633
+0.4
2.2
Chaperone protein DnaJ
compare
MPMX19
_06351
+0.4
0.7
Arsenate reductase
compare
MPMX19
_01413
+0.4
2.1
hypothetical protein
compare
MPMX19
_06807
+0.4
2.2
Solute-binding protein
compare
MPMX19
_03916
+0.4
0.9
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
compare
MPMX19
_00095
+0.4
2.5
ATP-dependent RNA helicase HrpB
compare
MPMX19
_02832
+0.4
2.4
putative cystine transporter YijE
compare
MPMX19
_00253
+0.4
2.7
FtsZ-localized protein A
compare
MPMX19
_03800
+0.4
1.0
hypothetical protein
compare
MPMX19
_03570
+0.4
2.2
Phenoxybenzoate dioxygenase subunit beta
compare
MPMX19
_06973
+0.4
2.0
2-methylfumaryl-CoA isomerase
compare
MPMX19
_06378
+0.4
2.2
hypothetical protein
compare
MPMX19
_05333
+0.4
1.1
Thymidine phosphorylase
compare
MPMX19
_05624
+0.4
0.7
hypothetical protein
compare
MPMX19
_03308
+0.4
1.3
hypothetical protein
compare
MPMX19
_01755
+0.4
1.6
hypothetical protein
compare
MPMX19
_00129
+0.4
0.7
hypothetical protein
compare
MPMX19
_03871
+0.4
1.0
3-oxoacyl-[acyl-carrier-protein] reductase FabG
compare
MPMX19
_00064
+0.4
2.2
hypothetical protein
compare
MPMX19
_02043
+0.4
2.3
hypothetical protein
compare
MPMX19
_05690
+0.4
2.3
Protein phosphotransferase ChpT
compare
MPMX19
_03109
+0.4
1.2
hypothetical protein
compare
MPMX19
_04680
+0.4
1.0
Inner membrane ABC transporter permease protein YdcV
compare
MPMX19
_02094
+0.4
1.5
hypothetical protein
compare
MPMX19
_01875
+0.4
1.6
hypothetical protein
compare
MPMX19
_03631
+0.4
0.8
hypothetical protein
compare
MPMX19
_03549
+0.4
1.4
HTH-type transcriptional regulator PgrR
compare
MPMX19
_06668
+0.4
2.7
2-deoxystreptamine glucosyltransferase
compare
MPMX19
_02374
+0.4
2.1
hypothetical protein
compare
MPMX19
_04002
+0.4
2.3
HTH-type transcriptional regulator MurR
compare
MPMX19
_02084
+0.4
0.8
hypothetical protein
compare
MPMX19
_04064
+0.4
2.3
hypothetical protein
compare
MPMX19
_06876
+0.4
1.2
Inner membrane amino-acid ABC transporter permease protein YhdY
compare
MPMX19
_03666
+0.4
1.7
hypothetical protein
compare
MPMX19
_02851
+0.4
1.5
hypothetical protein
compare
MPMX19
_06465
+0.4
1.6
hypothetical protein
compare
MPMX19
_04202
+0.4
1.2
Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system
compare
MPMX19
_00863
+0.4
2.2
Flagellar basal-body rod protein FlgC
compare
MPMX19
_00840
+0.4
1.2
Pyridoxine 5'-phosphate synthase
compare
MPMX19
_03595
+0.4
2.1
C4-dicarboxylate transport protein 2
compare
MPMX19
_00766
+0.4
0.6
hypothetical protein
compare
MPMX19
_00518
+0.4
1.3
hypothetical protein
compare
MPMX19
_06903
+0.4
1.9
Acetolactate synthase isozyme 2 large subunit
compare
MPMX19
_01263
+0.4
2.4
hypothetical protein
compare
MPMX19
_02353
+0.4
1.7
hypothetical protein
compare
MPMX19
_03715
+0.4
1.4
Response regulator ArlR
compare
MPMX19
_00225
+0.4
1.9
hypothetical protein
compare
MPMX19
_05178
+0.4
1.7
Alkanesulfonate monooxygenase
compare
MPMX19
_00543
+0.4
0.8
Molybdenum cofactor guanylyltransferase
compare
MPMX19
_06825
+0.4
2.1
hypothetical protein
compare
MPMX19
_06196
+0.4
1.7
Flagellum-specific ATP synthase
compare
MPMX19
_00515
+0.4
2.5
hypothetical protein
compare
MPMX19
_05292
+0.4
1.4
hypothetical protein
compare
MPMX19
_05779
+0.4
1.2
Beta-ketoadipyl-CoA thiolase
compare
MPMX19
_05234
+0.4
1.6
Glycine betaine/choline transport system permease protein OusW
compare
MPMX19
_00822
+0.4
2.0
Divalent metal cation transporter MntH
compare
MPMX19
_04392
+0.4
1.0
Bifunctional methionine biosynthesis protein MetXA/MetW
compare
MPMX19
_01704
+0.4
0.9
hypothetical protein
compare
MPMX19
_05838
+0.4
1.8
hypothetical protein
compare
MPMX19
_05104
+0.4
1.0
hypothetical protein
compare
MPMX19
_05623
+0.4
1.6
Photosynthetic apparatus regulatory protein RegA
compare
MPMX19
_04786
+0.4
2.3
Thymidylate kinase
compare
MPMX19
_02609
+0.4
1.5
tRNA-Gly
compare
MPMX19
_04267
+0.4
1.3
hypothetical protein
compare
MPMX19
_06387
+0.4
1.6
hypothetical protein
compare
MPMX19
_02363
+0.4
2.3
hypothetical protein
compare
Specific Phenotypes
None in this experiment
For Azospirillum sp. SherDot2 in nl-ccm experiments