Experiment set1S25 for Azospirillum sp. SherDot2

Compare to:

NL-CCM, start OD=0.1

200 most detrimental genes:

  gene name fitness t score description  
MPMX19_03655 +1.4 4.0 hypothetical protein compare
MPMX19_00297 +1.1 2.2 4-carboxy-4-hydroxy-2-oxoadipate aldolase compare
MPMX19_06197 +1.0 1.7 hypothetical protein compare
MPMX19_06610 +0.9 1.9 hypothetical protein compare
MPMX19_02816 +0.9 1.7 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_05853 +0.9 3.7 Lipopolysaccharide export system ATP-binding protein LptB compare
MPMX19_06488 +0.9 2.8 Taurine-binding periplasmic protein compare
MPMX19_02466 +0.8 2.1 Octopine permease ATP-binding protein P compare
MPMX19_04682 +0.8 2.0 hypothetical protein compare
MPMX19_00544 +0.8 1.3 hypothetical protein compare
MPMX19_02136 +0.8 1.2 Phage shock protein A compare
MPMX19_06763 +0.7 2.3 hypothetical protein compare
MPMX19_05906 +0.7 1.9 hypothetical protein compare
MPMX19_05798 +0.7 2.1 HTH-type transcriptional repressor NanR compare
MPMX19_05106 +0.7 3.4 Glycine betaine uptake system ATP-binding protein YehX compare
MPMX19_05193 +0.7 1.8 Taurine-binding periplasmic protein compare
MPMX19_06526 +0.7 2.9 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_01067 +0.7 0.8 hypothetical protein compare
MPMX19_03724 +0.7 1.8 hypothetical protein compare
MPMX19_05505 +0.7 2.2 Leucine-responsive regulatory protein compare
MPMX19_02536 +0.7 2.2 hypothetical protein compare
MPMX19_01376 +0.7 2.0 hypothetical protein compare
MPMX19_01059 +0.7 1.1 hypothetical protein compare
MPMX19_05188 +0.7 2.2 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_06456 +0.7 1.3 hypothetical protein compare
MPMX19_05656 +0.7 1.9 HTH-type transcriptional activator RhaR compare
MPMX19_00263 +0.7 1.9 hypothetical protein compare
MPMX19_03085 +0.6 1.5 Hydrogen peroxide-inducible genes activator compare
MPMX19_04687 +0.6 2.0 Atrazine chlorohydrolase compare
MPMX19_03073 +0.6 2.4 hypothetical protein compare
MPMX19_00208 +0.6 1.6 hypothetical protein compare
MPMX19_00334 +0.6 2.0 hypothetical protein compare
MPMX19_05581 +0.6 1.3 hypothetical protein compare
MPMX19_05575 +0.6 2.6 hypothetical protein compare
MPMX19_04205 +0.6 1.9 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_04518 +0.6 2.6 Acetyl-CoA:oxalate CoA-transferase compare
MPMX19_01614 +0.6 1.7 hypothetical protein compare
MPMX19_06506 +0.6 2.1 hypothetical protein compare
MPMX19_02538 +0.6 1.3 hypothetical protein compare
MPMX19_00664 +0.6 2.3 hypothetical protein compare
MPMX19_06967 +0.6 0.9 hypothetical protein compare
MPMX19_04095 +0.6 2.0 hypothetical protein compare
MPMX19_06989 +0.6 1.4 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_04863 +0.6 1.6 Transcriptional regulatory protein LnrK compare
MPMX19_01426 +0.6 1.0 hypothetical protein compare
MPMX19_06843 +0.6 2.1 hypothetical protein compare
MPMX19_06783 +0.6 2.6 5-keto-D-gluconate 5-reductase compare
MPMX19_06478 +0.6 2.7 hypothetical protein compare
MPMX19_04902 +0.6 2.8 hypothetical protein compare
MPMX19_06518 +0.6 2.9 Methionine import system permease protein MetP compare
MPMX19_00008 +0.6 2.0 hypothetical protein compare
MPMX19_02787 +0.6 2.1 (R)-benzylsuccinyl-CoA dehydrogenase compare
MPMX19_05430 +0.6 1.3 HTH-type transcriptional regulator DmlR compare
MPMX19_05989 +0.6 1.5 HTH-type transcriptional regulator HdfR compare
MPMX19_01479 +0.6 3.2 hypothetical protein compare
MPMX19_00675 +0.6 1.7 Peptidoglycan-associated lipoprotein compare
MPMX19_02613 +0.6 1.7 hypothetical protein compare
MPMX19_04286 +0.6 2.7 hypothetical protein compare
MPMX19_04145 +0.6 1.4 hypothetical protein compare
MPMX19_06463 +0.6 3.1 Hydroxycarboxylate dehydrogenase B compare
MPMX19_05551 +0.6 1.9 Chemotaxis protein CheY compare
MPMX19_05005 +0.6 2.1 hypothetical protein compare
MPMX19_06420 +0.5 2.0 hypothetical protein compare
MPMX19_06509 +0.5 1.7 Putative aliphatic sulfonates transport permease protein SsuC compare
MPMX19_01947 +0.5 2.2 Chemotaxis protein CheY compare
MPMX19_01073 +0.5 1.9 5'-nucleotidase compare
MPMX19_06768 +0.5 1.9 hypothetical protein compare
MPMX19_03523 +0.5 2.1 hypothetical protein compare
MPMX19_01454 +0.5 1.5 hypothetical protein compare
MPMX19_02735 +0.5 1.1 Sensor histidine kinase RcsC compare
MPMX19_05548 +0.5 2.2 D-methionine transport system permease protein MetI compare
MPMX19_06537 +0.5 2.5 NADH-dependent FMN reductase SfnF compare
MPMX19_06207 +0.5 1.6 hypothetical protein compare
MPMX19_01918 +0.5 0.9 tRNA-Ala compare
MPMX19_04520 +0.5 2.5 hypothetical protein compare
MPMX19_00240 +0.5 1.2 hypothetical protein compare
MPMX19_02041 +0.5 1.2 Protein YciI compare
MPMX19_03396 +0.5 2.1 High-affinity branched-chain amino acid transport ATP-binding protein LivF compare
MPMX19_04686 +0.5 2.8 Maleate isomerase compare
MPMX19_00294 +0.5 1.5 Adaptive-response sensory-kinase SasA compare
MPMX19_05011 +0.5 2.4 tRNA (cytidine(34)-2'-O)-methyltransferase compare
MPMX19_00846 +0.5 1.5 hypothetical protein compare
MPMX19_06656 +0.5 4.2 Dodecaprenyl-phosphate galacturonate synthase compare
MPMX19_04726 +0.5 1.8 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_06914 +0.5 1.3 Acyl-CoA dehydrogenase FadE27 compare
MPMX19_06759 +0.5 1.5 Taurine import ATP-binding protein TauB compare
MPMX19_06770 +0.5 2.8 NAD-dependent glycerol dehydrogenase compare
MPMX19_04265 +0.5 1.6 Aliphatic sulfonates import ATP-binding protein SsuB compare
MPMX19_05177 +0.5 1.6 Glyoxylate/hydroxypyruvate reductase A compare
MPMX19_00492 +0.5 2.0 Cobalamin biosynthesis protein CbiB compare
MPMX19_01203 +0.5 1.9 hypothetical protein compare
MPMX19_02604 +0.5 2.3 Mycothiol acetyltransferase compare
MPMX19_06901 +0.5 2.7 Alpha-ketoglutaric semialdehyde dehydrogenase compare
MPMX19_04620 +0.5 1.9 HTH-type transcriptional regulator CynR compare
MPMX19_03072 +0.5 0.7 hypothetical protein compare
MPMX19_01757 +0.5 2.1 Ferredoxin--NADP reductase compare
MPMX19_04096 +0.5 2.5 hypothetical protein compare
MPMX19_00132 +0.5 2.2 hypothetical protein compare
MPMX19_05618 +0.5 1.6 putative manganese efflux pump MntP compare
MPMX19_04570 +0.5 1.9 ECF RNA polymerase sigma factor SigF compare
MPMX19_03959 +0.5 1.2 hypothetical protein compare
MPMX19_05190 +0.5 2.2 putative malonic semialdehyde reductase RutE compare
MPMX19_03694 +0.5 1.1 hypothetical protein compare
MPMX19_05734 +0.5 2.2 Tol-Pal system protein TolQ compare
MPMX19_03470 +0.5 1.3 Phosphatidylinositol phosphate synthase compare
MPMX19_05226 +0.5 2.5 Oxidoreductase UcpA compare
MPMX19_06096 +0.5 2.7 hypothetical protein compare
MPMX19_02780 +0.4 2.2 hypothetical protein compare
MPMX19_02608 +0.4 1.9 hypothetical protein compare
MPMX19_04161 +0.4 0.9 hypothetical protein compare
MPMX19_00212 +0.4 3.6 Nitrogen fixation regulation protein FixK compare
MPMX19_02679 +0.4 1.1 hypothetical protein compare
MPMX19_02295 +0.4 2.3 Periplasmic nitrate reductase, electron transfer subunit compare
MPMX19_05203 +0.4 1.5 hypothetical protein compare
MPMX19_00923 +0.4 1.4 hypothetical protein compare
MPMX19_01596 +0.4 1.6 hypothetical protein compare
MPMX19_04100 +0.4 1.6 hypothetical protein compare
MPMX19_02817 +0.4 0.9 Serine 3-dehydrogenase compare
MPMX19_06195 +0.4 1.3 hypothetical protein compare
MPMX19_04664 +0.4 1.9 hypothetical protein compare
MPMX19_06774 +0.4 2.1 hypothetical protein compare
MPMX19_01460 +0.4 1.8 hypothetical protein compare
MPMX19_06193 +0.4 1.1 Flagellar hook-basal body complex protein FliE compare
MPMX19_00574 +0.4 1.8 hypothetical protein compare
MPMX19_06924 +0.4 1.7 hypothetical protein compare
MPMX19_04225 +0.4 2.0 hypothetical protein compare
MPMX19_01050 +0.4 1.0 hypothetical protein compare
MPMX19_04669 +0.4 1.3 Glucose 1-dehydrogenase compare
MPMX19_00204 +0.4 1.5 hypothetical protein compare
MPMX19_02580 +0.4 1.3 Acetyltransferase compare
MPMX19_05762 +0.4 1.3 hypothetical protein compare
MPMX19_03924 +0.4 1.2 hypothetical protein compare
MPMX19_03642 +0.4 1.2 hypothetical protein compare
MPMX19_06642 +0.4 3.5 Ubiquinone biosynthesis O-methyltransferase, mitochondrial compare
MPMX19_02633 +0.4 2.2 Chaperone protein DnaJ compare
MPMX19_06351 +0.4 0.7 Arsenate reductase compare
MPMX19_01413 +0.4 2.1 hypothetical protein compare
MPMX19_06807 +0.4 2.2 Solute-binding protein compare
MPMX19_03916 +0.4 0.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
MPMX19_00095 +0.4 2.5 ATP-dependent RNA helicase HrpB compare
MPMX19_02832 +0.4 2.4 putative cystine transporter YijE compare
MPMX19_00253 +0.4 2.7 FtsZ-localized protein A compare
MPMX19_03800 +0.4 1.0 hypothetical protein compare
MPMX19_03570 +0.4 2.2 Phenoxybenzoate dioxygenase subunit beta compare
MPMX19_06973 +0.4 2.0 2-methylfumaryl-CoA isomerase compare
MPMX19_06378 +0.4 2.2 hypothetical protein compare
MPMX19_05333 +0.4 1.1 Thymidine phosphorylase compare
MPMX19_05624 +0.4 0.7 hypothetical protein compare
MPMX19_03308 +0.4 1.3 hypothetical protein compare
MPMX19_01755 +0.4 1.6 hypothetical protein compare
MPMX19_00129 +0.4 0.7 hypothetical protein compare
MPMX19_03871 +0.4 1.0 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
MPMX19_00064 +0.4 2.2 hypothetical protein compare
MPMX19_02043 +0.4 2.3 hypothetical protein compare
MPMX19_05690 +0.4 2.3 Protein phosphotransferase ChpT compare
MPMX19_03109 +0.4 1.2 hypothetical protein compare
MPMX19_04680 +0.4 1.0 Inner membrane ABC transporter permease protein YdcV compare
MPMX19_02094 +0.4 1.5 hypothetical protein compare
MPMX19_01875 +0.4 1.6 hypothetical protein compare
MPMX19_03631 +0.4 0.8 hypothetical protein compare
MPMX19_03549 +0.4 1.4 HTH-type transcriptional regulator PgrR compare
MPMX19_06668 +0.4 2.7 2-deoxystreptamine glucosyltransferase compare
MPMX19_02374 +0.4 2.1 hypothetical protein compare
MPMX19_04002 +0.4 2.3 HTH-type transcriptional regulator MurR compare
MPMX19_02084 +0.4 0.8 hypothetical protein compare
MPMX19_04064 +0.4 2.3 hypothetical protein compare
MPMX19_06876 +0.4 1.2 Inner membrane amino-acid ABC transporter permease protein YhdY compare
MPMX19_03666 +0.4 1.7 hypothetical protein compare
MPMX19_02851 +0.4 1.5 hypothetical protein compare
MPMX19_06465 +0.4 1.6 hypothetical protein compare
MPMX19_04202 +0.4 1.2 Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system compare
MPMX19_00863 +0.4 2.2 Flagellar basal-body rod protein FlgC compare
MPMX19_00840 +0.4 1.2 Pyridoxine 5'-phosphate synthase compare
MPMX19_03595 +0.4 2.1 C4-dicarboxylate transport protein 2 compare
MPMX19_00766 +0.4 0.6 hypothetical protein compare
MPMX19_00518 +0.4 1.3 hypothetical protein compare
MPMX19_06903 +0.4 1.9 Acetolactate synthase isozyme 2 large subunit compare
MPMX19_01263 +0.4 2.4 hypothetical protein compare
MPMX19_02353 +0.4 1.7 hypothetical protein compare
MPMX19_03715 +0.4 1.4 Response regulator ArlR compare
MPMX19_00225 +0.4 1.9 hypothetical protein compare
MPMX19_05178 +0.4 1.7 Alkanesulfonate monooxygenase compare
MPMX19_00543 +0.4 0.8 Molybdenum cofactor guanylyltransferase compare
MPMX19_06825 +0.4 2.1 hypothetical protein compare
MPMX19_06196 +0.4 1.7 Flagellum-specific ATP synthase compare
MPMX19_00515 +0.4 2.5 hypothetical protein compare
MPMX19_05292 +0.4 1.4 hypothetical protein compare
MPMX19_05779 +0.4 1.2 Beta-ketoadipyl-CoA thiolase compare
MPMX19_05234 +0.4 1.6 Glycine betaine/choline transport system permease protein OusW compare
MPMX19_00822 +0.4 2.0 Divalent metal cation transporter MntH compare
MPMX19_04392 +0.4 1.0 Bifunctional methionine biosynthesis protein MetXA/MetW compare
MPMX19_01704 +0.4 0.9 hypothetical protein compare
MPMX19_05838 +0.4 1.8 hypothetical protein compare
MPMX19_05104 +0.4 1.0 hypothetical protein compare
MPMX19_05623 +0.4 1.6 Photosynthetic apparatus regulatory protein RegA compare
MPMX19_04786 +0.4 2.3 Thymidylate kinase compare
MPMX19_02609 +0.4 1.5 tRNA-Gly compare
MPMX19_04267 +0.4 1.3 hypothetical protein compare
MPMX19_06387 +0.4 1.6 hypothetical protein compare
MPMX19_02363 +0.4 2.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Azospirillum sp. SherDot2 in nl-ccm experiments