Experiment set1S185 for Escherichia coli ECOR27

Compare to:

Control_ECOR27

200 most important genes:

  gene name fitness t score description  
NOLOHH_13070 rseC -3.5 -2.4 SoxR-reducing system protein RseC compare
NOLOHH_08375 pitA -2.9 -3.8 inorganic phosphate transporter PitA compare
NOLOHH_20295 rluB -2.6 -3.5 23S rRNA pseudouridine(2605) synthase RluB compare
NOLOHH_14465 nuoB -2.4 -3.6 NADH-quinone oxidoreductase subunit NuoB compare
NOLOHH_07535 rfaG -2.3 -3.7 Lipopolysaccharide core biosynthesis protein RfaG compare
NOLOHH_19915 lysR -2.2 -3.2 LysR family transcriptional regulator compare
NOLOHH_09590 argR -2.1 -3.1 transcriptional regulator ArgR compare
NOLOHH_08720 glpD -2.0 -4.6 glycerol-3-phosphate dehydrogenase compare
NOLOHH_03190 apaH -2.0 -3.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
NOLOHH_06675 wzxE -1.9 -3.4 lipid III flippase WzxE compare
NOLOHH_18735 ydeA -1.8 -3.3 L-arabinose MFS transporter compare
NOLOHH_19930 abgT -1.8 -2.6 p-aminobenzoyl-glutamate transporter compare
NOLOHH_11490 fldB -1.8 -4.7 flavodoxin FldB compare
NOLOHH_14305 truA -1.7 -3.0 tRNA pseudouridine(38-40) synthase TruA compare
NOLOHH_23240 tolB -1.7 -3.1 Tol-Pal system protein TolB compare
NOLOHH_17720 ydiB -1.7 -2.3 quinate/shikimate dehydrogenase compare
NOLOHH_07540 rfaP -1.6 -3.7 lipopolysaccharide core heptose(I) kinase RfaP compare
NOLOHH_23105 pgl -1.5 -3.7 6-phosphogluconolactonase compare
NOLOHH_19370 cybB -1.4 -2.4 cytochrome b561 compare
NOLOHH_07625 grxC -1.3 -2.6 glutaredoxin 3 compare
NOLOHH_17905 purR -1.3 -2.1 HTH-type transcriptional repressor PurR compare
NOLOHH_11940 recD -1.3 -2.2 exodeoxyribonuclease V subunit alpha compare
NOLOHH_01975 ecpR -1.3 -2.6 ECP biosynthesis operon DNA-binding transcriptional regulator EcpR compare
NOLOHH_22860 -1.3 -2.6 terminase small subunit compare
NOLOHH_04085 rraB -1.2 -2.2 ribonuclease E inhibitor RraB compare
NOLOHH_13035 srmB -1.2 -3.7 ATP-dependent RNA helicase SrmB compare
NOLOHH_20055 ycjP -1.2 -2.4 Inner membrane ABC transporter permease protein YcjP compare
NOLOHH_05815 metL -1.2 -7.3 bifunctional aspartate kinase/homoserine dehydrogenase II compare
NOLOHH_14945 yejG -1.2 -2.4 Uncharacterized protein YejG compare
NOLOHH_15435 -1.2 -2.9 ADP-ribosylglycohydrolase family protein compare
NOLOHH_01255 lon_P403L -1.2 -3.9 Lon protease compare
NOLOHH_09585 yhcN -1.2 -2.3 peroxide/acid stress response protein YhcN compare
NOLOHH_02315 rnhA -1.1 -2.4 ribonuclease HI compare
NOLOHH_14470 nuoC -1.1 -2.1 NADH-quinone oxidoreductase subunit C/D compare
NOLOHH_10580 ubiK -1.1 -2.2 ubiquinone biosynthesis accessory factor UbiK compare
NOLOHH_14510 nuoL -1.1 -2.2 NADH-quinone oxidoreductase subunit L compare
NOLOHH_13390 bamB -1.1 -2.6 outer membrane protein assembly factor BamB compare
NOLOHH_14185 yfcZ -1.1 -2.2 UPF0381 protein YfcZ compare
NOLOHH_16835 pyk -1.1 -1.7 pyruvate kinase compare
NOLOHH_08305 -1.1 -2.9 transcriptional regulator compare
NOLOHH_13185 glyA -1.1 -1.9 serine hydroxymethyltransferase compare
NOLOHH_04490 nsrR -1.0 -3.1 nitric oxide-sensing transcriptional repressor NsrR compare
NOLOHH_00625 ylcG -1.0 -2.7 Uncharacterized protein YlcG compare
NOLOHH_23970 fepG -1.0 -2.5 iron-enterobactin ABC transporter permease compare
NOLOHH_22845 -1.0 -2.4 phage capsid protein compare
NOLOHH_21035 nagZ -1.0 -1.7 beta-N-acetylhexosaminidase compare
NOLOHH_10290 exuR -1.0 -3.4 transcriptional regulator ExuR compare
NOLOHH_23300 sucD -1.0 -2.7 succinate--CoA ligase subunit alpha compare
NOLOHH_02790 hpt -1.0 -4.0 hypoxanthine phosphoribosyltransferase compare
NOLOHH_15660 wcaD -1.0 -2.0 putative colanic acid polymerase WcaD compare
NOLOHH_03600 prfC -1.0 -5.0 peptide chain release factor 3 compare
NOLOHH_15470 gatB -1.0 -2.4 PTS galactitol transporter subunit IIB compare
NOLOHH_21670 appA -0.9 -1.7 bifunctional acid phosphatase/4-phytase compare
NOLOHH_00635 ybcO -0.9 -2.4 Putative nuclease YbcO compare
NOLOHH_17645 selO -0.9 -1.9 protein adenylyltransferase SelO compare
NOLOHH_21660 etp -0.9 -2.2 protein-tyrosine-phosphatase Etp compare
NOLOHH_03030 cra -0.9 -1.9 catabolite repressor/activator compare
NOLOHH_14740 yfaP -0.9 -2.6 Uncharacterized protein YfaP compare
NOLOHH_22300 artJ -0.9 -1.9 ABC transporter substrate-binding protein ArtJ compare
NOLOHH_08145 bcsZ -0.9 -5.1 cellulose synthase complex periplasmic endoglucanase BcsZ compare
NOLOHH_14215 fimC -0.9 -2.3 fimbrial protein compare
NOLOHH_17955 nemA -0.9 -1.8 N-ethylmaleimide reductase compare
NOLOHH_18150 fumB -0.9 -2.5 class I fumarate hydratase compare
NOLOHH_12870 yfiB -0.9 -1.5 OmpA family protein compare
NOLOHH_05930 yfcZ -0.9 -1.6 DUF406 domain-containing protein compare
NOLOHH_09940 pnp -0.9 -4.0 polyribonucleotide nucleotidyltransferase compare
NOLOHH_12455 hycI -0.9 -2.8 hydrogenase maturation peptidase HycI compare
NOLOHH_22835 -0.9 -1.7 hypothetical protein compare
NOLOHH_00385 -0.9 -1.0 hypothetical protein compare
NOLOHH_00360 -0.9 -5.1 relaxase/mobilization nuclease compare
NOLOHH_20950 potD -0.9 -1.7 spermidine/putrescine ABC transporter substrate-binding protein PotD compare
NOLOHH_08320 arsR -0.9 -2.7 As(III)-sensing metalloregulatory transcriptional repressor ArsR compare
NOLOHH_06385 fre -0.9 -3.8 NAD(P)H-flavin reductase compare
NOLOHH_09905 nusA -0.9 -1.6 Transcription termination/antitermination protein NusA compare
NOLOHH_09100 yheO -0.9 -2.6 Uncharacterized protein YheO compare
NOLOHH_17900 punR -0.9 -1.4 DNA-binding transcriptional activator PunR compare
NOLOHH_20925 roxA -0.9 -1.8 [50S ribosomal protein L16]-arginine 3-hydroxylase compare
NOLOHH_22855 -0.9 -2.5 PBSX family phage terminase large subunit compare
NOLOHH_23545 nagA -0.9 -2.8 N-acetylglucosamine-6-phosphate deacetylase compare
NOLOHH_03215 fixX -0.8 -1.7 ferredoxin-like protein FixX compare
NOLOHH_01535 proC -0.8 -2.3 pyrroline-5-carboxylate reductase compare
NOLOHH_14400 yfcD -0.8 -1.8 NUDIX hydrolase YfcD compare
NOLOHH_08530 panM -0.8 -2.3 aspartate 1-decarboxylase autocleavage activator PanM compare
NOLOHH_09610 zapG -0.8 -2.1 Z-ring associated protein ZapG compare
NOLOHH_06585 cyaY -0.8 -2.4 iron donor protein CyaY compare
NOLOHH_16365 yedE -0.8 -1.9 selenium metabolism membrane protein YedE/FdhT compare
NOLOHH_05850 -0.8 -1.7 DsORF-f3 compare
NOLOHH_11260 fumE -0.8 -1.5 fumarase E compare
NOLOHH_23140 modF -0.8 -2.4 molybdate ABC transporter ATP-binding protein ModF compare
NOLOHH_14335 purF -0.8 -2.3 amidophosphoribosyltransferase compare
NOLOHH_24335 -0.8 -1.5 YdeA protein compare
NOLOHH_15600 alkA -0.8 -2.2 DNA-3-methyladenine glycosylase 2 compare
NOLOHH_10020 diaA -0.8 -4.3 DnaA initiator-associating protein DiaA compare
NOLOHH_21400 ycdY -0.8 -1.5 molecular chaperone YcdY compare
NOLOHH_00840 ylbF -0.8 -2.8 Uncharacterized protein YlbF compare
NOLOHH_05695 sthA -0.8 -2.0 Si-specific NAD(P)(+) transhydrogenase compare
NOLOHH_11415 pepP -0.8 -1.8 Xaa-Pro aminopeptidase compare
NOLOHH_14480 nuoF -0.8 -2.2 NADH-quinone oxidoreductase subunit NuoF compare
NOLOHH_20035 ycjT -0.8 -1.5 kojibiose phosphorylase compare
NOLOHH_00780 -0.8 -1.6 Usher protein compare
NOLOHH_05335 pgi -0.8 -3.7 glucose-6-phosphate isomerase compare
NOLOHH_22880 -0.8 -3.5 phage holin, lambda family compare
NOLOHH_06220 typA -0.8 -4.4 ribosome-dependent GTPase TypA compare
NOLOHH_09850 yhbY -0.8 -1.6 ribosome assembly RNA-binding protein YhbY compare
NOLOHH_22115 dmsA -0.7 -1.8 dimethylsulfoxide reductase subunit A compare
NOLOHH_00745 -0.7 -2.6 hypothetical protein compare
NOLOHH_04690 fxsA -0.7 -1.9 membrane protein FxsA compare
NOLOHH_01840 yahI -0.7 -2.0 Carbamate kinase-like protein YahI compare
NOLOHH_22940 -0.7 -1.9 NinA compare
NOLOHH_08775 -0.7 -1.7 NfuA family Fe-S biogenesis protein compare
NOLOHH_23975 fepC -0.7 -1.7 ferrienterobactin ABC transporter ATPase compare
NOLOHH_11355 argP -0.7 -1.9 DNA-binding transcriptional regulator ArgP compare
NOLOHH_21020 ndh -0.7 -2.0 NADH-quinone dehydrogenase compare
NOLOHH_06915 mioC -0.7 -2.7 FMN-binding protein MioC compare
NOLOHH_08905 aroB -0.7 -2.0 3-dehydroquinate synthase compare
NOLOHH_14855 ccmA -0.7 -1.2 cytochrome c biogenesis heme-transporting ATPase CcmA compare
NOLOHH_15610 udk -0.7 -1.4 uridine kinase compare
NOLOHH_11070 yggL -0.7 -2.0 Uncharacterized protein YggL compare
NOLOHH_01085 recR -0.7 -1.7 recombination mediator RecR compare
NOLOHH_11125 yggS -0.7 -3.0 pyridoxal phosphate homeostasis protein compare
NOLOHH_06250 hemN -0.7 -3.2 oxygen-independent coproporphyrinogen III oxidase compare
NOLOHH_01310 cyoD -0.7 -2.0 cytochrome o ubiquinol oxidase subunit III compare
NOLOHH_01035 ybaK -0.7 -1.7 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
NOLOHH_15340 rcnB -0.7 -1.6 Ni(II)/Co(II) efflux transporter accessory subunit RcnB compare
NOLOHH_21120 plsX -0.7 -1.9 phosphate acyltransferase PlsX compare
NOLOHH_07020 pstA -0.7 -1.6 phosphate ABC transporter permease PstA compare
NOLOHH_13445 ppx -0.7 -2.1 exopolyphosphatase compare
NOLOHH_12685 ygaM -0.7 -1.7 Uncharacterized protein YgaM compare
NOLOHH_21925 pncB -0.7 -2.0 nicotinate phosphoribosyltransferase compare
NOLOHH_23520 chiP -0.7 -2.0 chitoporin compare
NOLOHH_13850 cysM -0.7 -1.5 cysteine synthase B compare
NOLOHH_23345 gltA -0.7 -2.0 citrate synthase compare
NOLOHH_01375 yajO -0.7 -2.3 1-deoxyxylulose-5-phosphate synthase YajO compare
NOLOHH_23665 hscC -0.7 -1.5 molecular chaperone HscC compare
NOLOHH_15035 psuT -0.7 -1.4 Putative pseudouridine transporter compare
NOLOHH_08670 yhgO -0.7 -1.2 Protein YhgO compare
NOLOHH_14380 folX -0.7 -1.9 dihydroneopterin triphosphate 2'-epimerase compare
NOLOHH_06540 uvrD -0.7 -4.0 DNA helicase II compare
NOLOHH_08715 -0.7 -2.2 Ybl142 compare
NOLOHH_11145 gshB -0.7 -2.4 glutathione synthase compare
NOLOHH_22820 -0.7 -2.1 Phage-tail-NK domain-containing protein compare
NOLOHH_03055 leuL -0.7 -1.7 leu operon leader peptide compare
NOLOHH_23055 -0.7 -1.3 DUF550 domain-containing protein compare
NOLOHH_24420 -0.7 -1.8 F7-2 fimbrial protein compare
NOLOHH_14270 yfcL -0.7 -1.2 Uncharacterized protein YfcL compare
NOLOHH_09645 nanR -0.7 -1.6 transcriptional regulator NanR compare
NOLOHH_23810 dpiA -0.7 -2.3 two-component response regulator DpiA compare
NOLOHH_13410 guaB -0.7 -2.1 IMP dehydrogenase compare
NOLOHH_24280 yubM -0.7 -1.9 Uncharacterized protein YubM compare
NOLOHH_07550 rfaY -0.7 -1.9 lipopolysaccharide core heptose(II) kinase RfaY compare
NOLOHH_13520 hyfH -0.7 -2.5 hydrogenase 4 subunit H compare
NOLOHH_02805 yacC -0.7 -2.5 YacC family pilotin-like protein compare
NOLOHH_02450 yaeP -0.7 -1.8 YaeP family protein compare
NOLOHH_22945 ren -0.7 -1.4 Protein ren compare
NOLOHH_16960 yebS -0.7 -2.2 membrane integrity lipid transport subunit YebS compare
NOLOHH_09530 rng -0.7 -1.9 ribonuclease G compare
NOLOHH_08725 glpE -0.7 -2.7 thiosulfate sulfurtransferase GlpE compare
NOLOHH_21850 pyrD -0.7 -1.3 quinone-dependent dihydroorotate dehydrogenase compare
NOLOHH_22850 -0.6 -3.6 portal protein compare
NOLOHH_20725 dadA -0.6 -1.0 D-amino acid dehydrogenase compare
NOLOHH_11140 yqgE -0.6 -1.7 YqgE/AlgH family protein compare
NOLOHH_01445 queA -0.6 -2.2 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
NOLOHH_15010 fruB -0.6 -1.7 fused PTS fructose transporter subunit IIA/HPr protein compare
NOLOHH_07330 ilvN -0.6 -1.9 acetolactate synthase small subunit compare
NOLOHH_20640 ychH -0.6 -1.8 stress-induced protein YchH compare
NOLOHH_09355 aroE -0.6 -1.2 shikimate dehydrogenase compare
NOLOHH_06195 ompL -0.6 -1.9 porin OmpL compare
NOLOHH_14970 pdeN -0.6 -2.0 cyclic di-GMP phosphodiesterase compare
NOLOHH_10235 -0.6 -1.8 DUF805 domain-containing protein compare
NOLOHH_09725 rapZ -0.6 -1.6 RNase adapter RapZ compare
NOLOHH_22910 ninG -0.6 -1.3 Protein ninG compare
NOLOHH_20600 sirB2 -0.6 -1.0 invasion regulator SirB2 compare
NOLOHH_09755 lptC -0.6 -1.8 LPS export ABC transporter periplasmic protein LptC compare
NOLOHH_12925 rluD -0.6 -2.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
NOLOHH_12830 -0.6 -1.8 Cytoplasmic protein compare
NOLOHH_15015 fruB -0.6 -1.5 fused PTS fructose transporter subunit IIA/HPr protein compare
NOLOHH_17320 ansA -0.6 -1.5 asparaginase compare
NOLOHH_10655 qseC -0.6 -2.5 two-component system sensor histidine kinase QseC compare
NOLOHH_23025 -0.6 -2.2 DNA recombinase compare
NOLOHH_02600 degP -0.6 -2.9 serine endoprotease DegP compare
NOLOHH_21870 elfG -0.6 -1.7 Uncharacterized fimbrial-like protein ElfG compare
NOLOHH_23330 sdhD -0.6 -1.9 succinate dehydrogenase membrane anchor subunit compare
NOLOHH_07425 recG -0.6 -3.1 ATP-dependent DNA helicase RecG compare
NOLOHH_06665 wzyE -0.6 -1.9 ECA oligosaccharide polymerase compare
NOLOHH_23150 galT -0.6 -1.5 galactose-1-phosphate uridylyltransferase compare
NOLOHH_08270 hdeA -0.6 -1.2 acid-activated periplasmic chaperone HdeA compare
NOLOHH_22870 -0.6 -1.6 lysis protein compare
NOLOHH_03920 fimC -0.6 -2.2 type 1 fimbria chaperone FimC compare
NOLOHH_20180 yciW -0.6 -1.4 Uncharacterized protein YciW compare
NOLOHH_15890 sbcB -0.6 -1.1 exodeoxyribonuclease I compare
NOLOHH_12810 bamE -0.6 -2.0 outer membrane protein assembly factor BamE compare
NOLOHH_02745 panB -0.6 -2.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
NOLOHH_23100 ybhD -0.6 -1.3 Uncharacterized HTH-type transcriptional regulator YbhD compare
NOLOHH_06235 glnL -0.6 -2.0 nitrogen regulation protein NR(II) compare
NOLOHH_23685 djlB -0.6 -2.1 Uncharacterized J domain-containing protein DjlB compare
NOLOHH_03925 fimI -0.6 -1.9 Fimbrin-like protein fimI precursor compare
NOLOHH_21860 fimA -0.6 -1.4 fimbrial protein compare
NOLOHH_00645 ybcN -0.6 -2.5 DNA base-flipping protein YbcN compare
NOLOHH_03940 fimB -0.6 -2.0 type 1 fimbria switch DNA invertase FimB compare
NOLOHH_18420 quuQ -0.6 -1.1 Prophage antitermination Q-like protein QuuQ compare


Specific Phenotypes

None in this experiment

For Escherichia coli ECOR27 in no phage control experiments

For no phage control No phage across organisms