Experiment set1S18 for Rhodanobacter sp. FW510-T8

Compare to:

R2A_PIPES with Cobalt chloride hexahydrate 512 uM

200 most important genes:

  gene name fitness t score description  
OKGIIK_07040 smc -4.6 -3.2 chromosome segregation protein SMC compare
OKGIIK_13570 thrC -4.5 -3.0 threonine synthase compare
OKGIIK_07300 -3.7 -3.5 carbamoyl phosphate synthase small subunit compare
OKGIIK_11115 fiu -3.6 -3.4 Outer membrane receptor for monomeric catechols compare
OKGIIK_01155 cpsB -3.4 -3.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
OKGIIK_02315 purM -3.1 -3.7 phosphoribosylformylglycinamidine cyclo-ligase compare
OKGIIK_01165 rfbC -3.1 -5.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
OKGIIK_11415 ldcA -3.1 -4.6 muramoyltetrapeptide carboxypeptidase compare
OKGIIK_00990 -3.0 -2.9 TonB-dependent copper receptor compare
OKGIIK_10175 rseP -3.0 -2.8 RIP metalloprotease RseP compare
OKGIIK_11505 purL -2.9 -4.0 phosphoribosylformylglycinamidine synthase compare
OKGIIK_01790 rluD -2.9 -6.4 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
OKGIIK_05570 purF -2.8 -4.2 amidophosphoribosyltransferase compare
OKGIIK_03000 degQ -2.8 -10.2 peptidase S1 compare
OKGIIK_07250 lapB -2.7 -8.3 lipopolysaccharide assembly protein LapB compare
OKGIIK_03430 -2.7 -5.1 N-acetylmuramoyl-L-alanine amidase compare
OKGIIK_06585 ompA -2.6 -10.1 flagellar motor protein MotB compare
OKGIIK_13750 purD -2.6 -2.5 phosphoribosylamine--glycine ligase compare
OKGIIK_01190 -2.5 -2.9 Transport permease protein compare
OKGIIK_01845 kup -2.5 -3.4 potassium uptake protein compare
OKGIIK_12965 -2.4 -6.7 glutamate--cysteine ligase compare
OKGIIK_01110 pgk -2.4 -5.7 phosphoglycerate kinase compare
OKGIIK_11105 baeS -2.4 -4.5 sensor histidine kinase compare
OKGIIK_14160 -2.4 -7.1 ABC transporter ATP-binding protein compare
OKGIIK_07900 rpoE -2.4 -9.0 RNA polymerase sigma factor RpoE compare
OKGIIK_14180 -2.4 -5.3 DNA-binding response regulator compare
OKGIIK_05630 elaC -2.4 -4.2 Ribonuclease BN, tRNA processing enzyme compare
OKGIIK_09995 yajC -2.3 -3.2 preprotein translocase subunit YajC compare
OKGIIK_07255 -2.3 -3.6 LapA-dom domain-containing protein compare
OKGIIK_07005 asnB -2.3 -8.2 asparagine synthase B compare
OKGIIK_12885 -2.2 -1.8 hypothetical protein compare
OKGIIK_13745 -2.2 -15.6 Type III secretion system lipoprotein chaperone (YscW) compare
OKGIIK_11445 ettA -2.2 -7.5 energy-dependent translational throttle protein EttA compare
OKGIIK_06755 rnr -2.2 -13.4 ribonuclease R compare
OKGIIK_06870 hflD -2.2 -6.4 high frequency lysogenization protein HflD compare
OKGIIK_05615 -2.2 -4.0 DUF6165 domain-containing protein compare
OKGIIK_14175 -2.2 -12.9 Sensor protein QseC compare
OKGIIK_01060 gap -2.1 -7.3 type I glyceraldehyde-3-phosphate dehydrogenase compare
OKGIIK_16565 mgtA -2.1 -6.1 magnesium-translocating P-type ATPase compare
OKGIIK_11965 mscL -2.1 -2.4 large-conductance mechanosensitive channel protein MscL compare
OKGIIK_07295 carB -2.1 -5.3 carbamoyl-phosphate synthase large subunit compare
OKGIIK_09020 adhE -2.1 -4.6 aldehyde dehydrogenase family protein compare
OKGIIK_12705 pta -2.1 -3.3 NADP-dependent malic enzyme compare
OKGIIK_11110 ompR -2.1 -7.6 DNA-binding response regulator compare
OKGIIK_05620 rfaF -2.0 -5.1 ADP-heptose--LPS heptosyltransferase compare
OKGIIK_00110 ctpA -2.0 -4.3 C-terminal processing protease CtpA/Prc, contains a PDZ domain compare
OKGIIK_09225 -2.0 -2.4 RecBCD enzyme subunit RecC compare
OKGIIK_08010 -2.0 -9.0 Peptidylprolyl isomerase compare
OKGIIK_09515 gph -2.0 -5.2 phosphoglycolate phosphatase compare
OKGIIK_15045 -1.9 -4.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
OKGIIK_14150 -1.9 -10.9 Alpha/beta hydrolase compare
OKGIIK_14170 -1.9 -11.5 TolC family protein compare
OKGIIK_02260 raiA -1.9 -10.1 ribosomal subunit interface protein compare
OKGIIK_00755 pdhA -1.9 -2.5 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
OKGIIK_03890 panC -1.9 -3.0 pantoate--beta-alanine ligase compare
OKGIIK_01195 -1.8 -4.0 ABC transporter, ATP-binding protein compare
OKGIIK_11495 -1.7 -6.8 Glycosyl transferase family 2 compare
OKGIIK_05210 -1.7 -2.4 HigA family addiction module antitoxin compare
OKGIIK_06640 hflK -1.7 -6.6 FtsH protease activity modulator HflK compare
OKGIIK_13840 tagB -1.7 -8.0 CDP-glycerol glycerophosphotransferase compare
OKGIIK_14165 lolE -1.7 -10.6 ABC transporter permease compare
OKGIIK_15650 ftsN -1.7 -3.4 sporulation protein compare
OKGIIK_01215 -1.7 -7.2 GDP-mannose 4,6 dehydratase compare
OKGIIK_01080 fba1 -1.7 -9.3 fructose-bisphosphate aldolase class I compare
OKGIIK_00795 ycgM -1.7 -6.1 2-keto-4-pentenoate hydratase compare
OKGIIK_06740 gcvP2 -1.6 -7.6 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain compare
OKGIIK_06555 ahpC -1.6 -3.6 alkyl hydroperoxide reductase subunit C compare
OKGIIK_14110 fabB -1.6 -5.6 3-oxoacyl-(acyl-carrier-protein) synthase compare
OKGIIK_14085 mtnX -1.6 -7.6 phosphatase compare
OKGIIK_16060 gpmA -1.6 -4.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
OKGIIK_09975 -1.6 -6.9 Aminoglycoside phosphotransferase compare
OKGIIK_06880 -1.6 -1.4 Phosphatase NudJ compare
OKGIIK_05955 tauE -1.6 -6.8 sulfite exporter TauE/SafE family protein compare
OKGIIK_03795 -1.6 -10.4 Putative beta-barrel assembly-enhancing protease compare
OKGIIK_01310 gcvH -1.6 -3.4 glycine cleavage system protein GcvH compare
OKGIIK_03870 Glu_trna -1.6 -1.2 tRNA-Glu compare
OKGIIK_16075 -1.5 -1.7 Peptidase C13 compare
OKGIIK_15695 -1.5 -6.4 MFS transporter compare
OKGIIK_11075 gshB -1.5 -4.4 glutathione synthase compare
OKGIIK_02200 dmeF -1.5 -9.6 CDF family Co(II)/Ni(II) efflux transporter DmeF compare
OKGIIK_07245 -1.5 -5.6 Glycosyl transferase family 4 compare
OKGIIK_09230 -1.5 -2.0 RecBCD enzyme subunit RecB compare
OKGIIK_01235 -1.5 -8.7 Glycosyl transferases group 1 compare
OKGIIK_03065 yqjQ -1.5 -4.0 Short-chain dehydrogenase compare
OKGIIK_06645 hflC -1.4 -6.4 protease modulator HflC compare
OKGIIK_00275 -1.4 -2.9 Antitoxin compare
OKGIIK_01160 rfbD -1.4 -4.4 dTDP-4-dehydrorhamnose reductase compare
OKGIIK_02250 rapZ -1.4 -6.9 RNase adapter RapZ compare
OKGIIK_14090 argD -1.4 -8.5 aspartate aminotransferase family protein compare
OKGIIK_16630 -1.4 -4.9 hypothetical protein compare
OKGIIK_01320 -1.4 -4.0 Protein TonB compare
OKGIIK_07670 ccoP -1.4 -2.7 cytochrome-c oxidase, cbb3-type subunit III compare
OKGIIK_07125 -1.4 -2.6 Ancillary SecYEG translocon subunit compare
OKGIIK_01175 rfbB -1.4 -7.7 dTDP-glucose 4,6-dehydratase compare
OKGIIK_14155 -1.4 -4.3 Secretion protein HlyD compare
OKGIIK_09590 rplI -1.3 -2.2 50S ribosomal protein L9 compare
OKGIIK_01240 -1.3 -3.7 EamA domain-containing protein compare
OKGIIK_12590 lpdA -1.3 -2.5 dihydrolipoyl dehydrogenase compare
OKGIIK_04850 trpA -1.3 -3.6 tryptophan synthase subunit alpha compare
OKGIIK_15705 -1.3 -4.7 anhydro-N-acetylmuramic acid kinase compare
OKGIIK_11005 suhB -1.3 -3.2 Archaeal fructose-1,6-bisphosphatase or related enzyme, inositol monophosphatase family compare
OKGIIK_01170 rfbA -1.3 -6.6 glucose-1-phosphate thymidylyltransferase RfbA compare
OKGIIK_08355 -1.3 -1.8 hypothetical protein compare
OKGIIK_13440 -1.3 -7.6 type I restriction-modification system subunit M compare
OKGIIK_07655 ccoN -1.3 -3.3 cytochrome-c oxidase, cbb3-type subunit I compare
OKGIIK_07400 -1.3 -1.4 4a-hydroxytetrahydrobiopterin dehydratase compare
OKGIIK_03555 metP -1.2 -4.9 metal ABC transporter permease compare
OKGIIK_05625 -1.2 -4.9 3-deoxy-D-manno-octulosonic acid kinase compare
OKGIIK_08030 lon -1.2 -8.5 endopeptidase La compare
OKGIIK_01780 -1.2 -3.0 NAD+ synthase compare
OKGIIK_01095 tkt -1.2 -4.8 transketolase compare
OKGIIK_01220 -1.2 -8.6 Phosphomannomutase compare
OKGIIK_06965 -1.2 -5.5 conjugal transfer protein TraB compare
OKGIIK_14565 -1.2 -1.1 Lipid A 3-O-deacylase (PagL) compare
OKGIIK_14345 nagA -1.2 -4.9 N-acetylglucosamine-6-phosphate deacetylase compare
OKGIIK_08705 -1.1 -1.3 hypothetical protein compare
OKGIIK_02875 -1.1 -2.0 Flg-hook domain-containing protein compare
OKGIIK_13825 -1.1 -7.5 hypothetical protein compare
OKGIIK_03865 -1.1 -1.5 ferredoxin compare
OKGIIK_09875 glpG -1.1 -7.7 DUF1751 domain-containing protein compare
OKGIIK_11030 -1.1 -6.3 P63C domain-containing protein compare
OKGIIK_16455 bioD -1.1 -1.8 dethiobiotin synthase compare
OKGIIK_05880 phaC -1.1 -7.0 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
OKGIIK_04845 trpB -1.1 -5.5 tryptophan synthase subunit beta compare
OKGIIK_07870 rnc -1.0 -1.1 ribonuclease III compare
OKGIIK_15595 -1.0 -7.5 Phospholipase D family protein compare
OKGIIK_06435 scpA -1.0 -2.4 Chromatin segregation and condensation protein Rec8/ScpA/Scc1, kleisin family compare
OKGIIK_06910 serC -1.0 -5.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
OKGIIK_09445 -1.0 -2.4 acetylornithine deacetylase compare
OKGIIK_07885 -1.0 -4.9 Elongation factor 4 compare
OKGIIK_04970 hisA -1.0 -3.9 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
OKGIIK_16680 natA -1.0 -2.9 ABC transporter compare
OKGIIK_08100 -1.0 -4.4 Peptidase M23 compare
OKGIIK_04805 aroC -1.0 -2.9 chorismate synthase compare
OKGIIK_01890 -1.0 -3.3 7-carboxy-7-deazaguanine synthase compare
OKGIIK_06580 prpD -1.0 -3.8 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
OKGIIK_12820 sYLF -1.0 -3.4 Las17-binding protein actin regulator compare
OKGIIK_09575 ypjD -1.0 -4.0 Cytochrome C assembly protein compare
OKGIIK_01075 -1.0 -7.0 Energy transducer TonB compare
OKGIIK_07290 greA -1.0 -3.1 transcription elongation factor GreA compare
OKGIIK_03550 nlpA -1.0 -4.0 methionine ABC transporter substrate-binding protein compare
OKGIIK_07430 secG -1.0 -3.3 preprotein translocase subunit SecG compare
OKGIIK_11440 glyA -0.9 -4.7 serine hydroxymethyltransferase compare
OKGIIK_08855 -0.9 -1.7 hypothetical protein compare
OKGIIK_09500 dksA -0.9 -1.0 RNA polymerase-binding protein DksA compare
OKGIIK_07285 lysR -0.9 -6.0 LysR family transcriptional regulator compare
OKGIIK_03070 marC -0.9 -4.8 YhgN family NAAT transporter compare
OKGIIK_15520 pgi -0.9 -2.6 glucose-6-phosphate isomerase compare
OKGIIK_02115 ttdA -0.9 -3.4 fumarate hydratase compare
OKGIIK_02070 -0.9 -2.2 hypothetical protein compare
OKGIIK_03335 -0.9 -6.5 Polyketide cyclase compare
OKGIIK_12205 -0.9 -1.1 hypothetical protein compare
OKGIIK_09420 proB -0.9 -2.3 glutamate 5-kinase compare
OKGIIK_16560 -0.9 -3.9 hypothetical protein compare
OKGIIK_07240 flaA1 -0.9 -5.9 polysaccharide biosynthesis protein compare
OKGIIK_13155 -0.8 -1.2 AsnC family transcriptional regulator compare
OKGIIK_12920 ctpA -0.8 -5.4 C-terminal processing protease CtpA/Prc, contains a PDZ domain compare
OKGIIK_00825 -0.8 -4.1 Cytochrome B compare
OKGIIK_04705 dcd -0.8 -5.4 dCTP deaminase compare
OKGIIK_12095 ridA -0.8 -4.9 reactive intermediate/imine deaminase compare
OKGIIK_00685 -0.8 -1.7 hypothetical protein compare
OKGIIK_01200 -0.8 -4.9 FkbM family methyltransferase compare
OKGIIK_11740 -0.8 -4.7 LppC putative lipoprotein compare
OKGIIK_05875 -0.8 -3.2 Poly(3-hydroxyalkanoate) polymerase subunit PhaE compare
OKGIIK_06200 -0.8 -3.0 DUF411 domain-containing protein compare
OKGIIK_06145 merE -0.8 -0.9 broad-spectrum mercury transporter MerE compare
OKGIIK_00680 -0.8 -2.2 hypothetical protein compare
OKGIIK_06630 hfq -0.8 -3.1 RNA chaperone Hfq compare
OKGIIK_06095 -0.8 -1.0 (2Fe-2S)-binding protein compare
OKGIIK_01125 -0.8 -2.6 DUF4398 domain-containing protein compare
OKGIIK_04860 -0.8 -2.8 phosphatase PAP2 family protein compare
OKGIIK_12135 mlaF -0.8 -3.5 ABC transporter ATP-binding protein compare
OKGIIK_04085 -0.8 -1.0 hypothetical protein compare
OKGIIK_09060 yurZ -0.8 -1.9 Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family compare
OKGIIK_11255 yjjB -0.8 -1.7 Putative threonine/serine exporter compare
OKGIIK_02255 hprK -0.7 -3.9 HPr(Ser) kinase/phosphatase compare
OKGIIK_01830 tACO1 -0.7 -0.7 YebC/PmpR family DNA-binding transcriptional regulator compare
OKGIIK_08775 -0.7 -0.9 hypothetical protein compare
OKGIIK_07365 -0.7 -2.2 RnfH family protein compare
OKGIIK_00465 -0.7 -1.1 Energy transducer TonB compare
OKGIIK_06140 merD -0.7 -3.5 mercuric resistance transcriptional repressor protein MerD compare
OKGIIK_11330 lolD -0.7 -1.0 ABC transporter ATP-binding protein compare
OKGIIK_16950 tolC -0.7 -4.9 Outer membrane protein TolC compare
OKGIIK_13445 -0.7 -3.5 Restriction endonuclease subunit S compare
OKGIIK_04335 -0.7 -2.3 branched-chain amino acid transporter AzlD compare
OKGIIK_14850 -0.7 -1.7 3-beta hydroxysteroid dehydrogenase compare
OKGIIK_03635 fabG -0.7 -4.6 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
OKGIIK_10950 ompR -0.7 -4.7 DNA-binding response regulator compare
OKGIIK_11180 -0.7 -2.6 Shikimate kinase compare
OKGIIK_10960 -0.7 -1.2 ABC transporter compare
OKGIIK_09430 argH -0.7 -2.6 argininosuccinate lyase compare
OKGIIK_12065 -0.7 -5.3 Penicillin-binding protein 1A compare
OKGIIK_13065 -0.7 -2.7 hypothetical protein compare
OKGIIK_16440 -0.7 -1.8 Cytochrome C compare
OKGIIK_08285 -0.7 -1.2 RNA signal recognition particle compare
OKGIIK_08045 tig -0.7 -2.6 trigger factor compare
OKGIIK_16685 natB -0.7 -3.6 ABC transporter permease compare
OKGIIK_05950 roxA -0.7 -1.3 transcription factor compare
OKGIIK_01560 -0.7 -1.3 HTH cro/C1-type domain-containing protein compare
OKGIIK_09370 fabG -0.7 -1.9 3-hydroxyacyl-CoA dehydrogenase compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp. FW510-T8 in stress experiments

For stress Cobalt chloride hexahydrate across organisms