Experiment set1S18 for Rhodanobacter sp. FW510-T8

Compare to:

R2A_PIPES with Cobalt chloride hexahydrate 512 uM

200 most detrimental genes:

  gene name fitness t score description  
OKGIIK_09315 feoB +1.7 15.5 ferrous iron transport protein B compare
OKGIIK_09310 +1.4 6.2 DUF6587 domain-containing protein compare
OKGIIK_01595 +1.1 2.7 Polyisoprenoid-binding protein compare
OKGIIK_14700 +0.9 3.3 Hexosyltransferase compare
OKGIIK_14990 +0.9 3.5 DUF883 domain-containing protein compare
OKGIIK_03295 +0.9 2.5 hypothetical protein compare
OKGIIK_10945 +0.8 5.4 Histidine kinase compare
OKGIIK_12085 uRH1 +0.8 3.0 nucleoside hydrolase compare
OKGIIK_08700 +0.7 2.3 hypothetical protein compare
OKGIIK_12565 +0.7 1.9 hypothetical protein compare
OKGIIK_01475 +0.7 2.3 Response regulatory domain-containing protein compare
OKGIIK_03895 panD +0.7 2.4 aspartate 1-decarboxylase compare
OKGIIK_11815 +0.7 1.7 GIY-YIG domain-containing protein compare
OKGIIK_02370 atl1 +0.7 1.6 cysteine methyltransferase compare
OKGIIK_00350 +0.7 2.2 TonB-dependent receptor compare
OKGIIK_12025 +0.7 2.4 DUF4381 domain-containing protein compare
OKGIIK_09425 +0.7 2.7 Cupin compare
OKGIIK_04565 +0.7 1.3 hypothetical protein compare
OKGIIK_02920 tar +0.7 1.6 Methyl-accepting chemotaxis protein (MCP) compare
OKGIIK_13330 yifB +0.6 2.8 YifB family Mg chelatase-like AAA ATPase compare
OKGIIK_15305 rbsK +0.6 1.6 ribokinase compare
OKGIIK_16780 +0.6 1.5 hypothetical protein compare
OKGIIK_13980 Ile2_trna +0.6 1.1 tRNA-Ile2 compare
OKGIIK_16095 +0.6 1.5 Cytochrome C compare
OKGIIK_13280 +0.6 2.0 Acyltransferase compare
OKGIIK_08520 +0.6 1.1 MarR family transcriptional regulator compare
OKGIIK_08825 +0.6 1.9 hypothetical protein compare
OKGIIK_11235 pssA +0.5 1.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
OKGIIK_00725 +0.5 1.7 DUF6348 domain-containing protein compare
OKGIIK_07060 +0.5 1.5 hypothetical protein compare
OKGIIK_01710 ompR +0.5 3.5 two-component system response regulator compare
OKGIIK_06825 +0.5 2.7 hypothetical protein compare
OKGIIK_07110 moeB +0.5 2.4 molybdopterin-synthase adenylyltransferase MoeB compare
OKGIIK_01355 hslO +0.5 2.3 heat-shock protein Hsp33 compare
OKGIIK_16375 folA +0.5 1.3 deaminase compare
OKGIIK_14580 +0.5 2.4 EthD family reductase compare
OKGIIK_07855 +0.5 0.9 Histidine kinase compare
OKGIIK_06450 +0.5 1.6 hypothetical protein compare
OKGIIK_17060 +0.5 2.0 hypothetical protein compare
OKGIIK_16460 +0.5 1.2 hypothetical protein compare
OKGIIK_13835 +0.5 1.0 hypothetical protein compare
OKGIIK_15000 +0.5 1.6 Phospholipid-binding protein compare
OKGIIK_08195 +0.5 4.0 diguanylate cyclase compare
OKGIIK_02725 +0.5 1.2 hypothetical protein compare
OKGIIK_00855 +0.5 1.9 Cytochrome B compare
OKGIIK_08880 +0.5 0.7 hypothetical protein compare
OKGIIK_13140 +0.5 1.7 DUF2249 domain-containing protein compare
OKGIIK_14390 +0.5 1.1 DUF4142 domain-containing protein compare
OKGIIK_01270 +0.5 0.9 Transcriptional regulator compare
OKGIIK_03480 msrB +0.5 2.1 peptide-methionine (R)-S-oxide reductase compare
OKGIIK_08670 +0.5 1.3 N-acetyltransferase domain-containing protein compare
OKGIIK_02690 flgJ +0.5 1.7 flagellar assembly peptidoglycan hydrolase FlgJ compare
OKGIIK_00955 +0.5 2.6 Transcriptional regulator compare
OKGIIK_15165 +0.5 0.7 hypothetical protein compare
OKGIIK_05905 ibpA +0.5 1.4 heat-shock protein Hsp20 compare
OKGIIK_05020 +0.5 1.6 NUDIX hydrolase compare
OKGIIK_08505 +0.5 1.6 Rick-17kDa-Anti domain-containing protein compare
OKGIIK_12845 +0.5 2.5 DUF1993 domain-containing protein compare
OKGIIK_01730 atoC +0.5 2.9 sigma-54-dependent Fis family transcriptional regulator compare
OKGIIK_02650 flgB +0.5 1.9 flagellar basal body rod protein FlgB compare
OKGIIK_06085 merR +0.4 1.8 Hg(II)-responsive transcriptional regulator compare
OKGIIK_13335 ubiK +0.4 1.1 Ubiquinone biosynthesis accessory factor UbiK compare
OKGIIK_08130 truD +0.4 2.3 tRNA pseudouridine(13) synthase TruD compare
OKGIIK_09855 +0.4 0.8 hypothetical protein compare
OKGIIK_05085 pTR2 +0.4 2.9 MFS transporter compare
OKGIIK_04800 rimL +0.4 0.8 N-acetyltransferase compare
OKGIIK_01515 metB +0.4 2.9 cystathionine gamma-synthase compare
OKGIIK_08340 +0.4 1.7 Addiction module toxin RelE compare
OKGIIK_12165 +0.4 2.5 DUF1631 domain-containing protein compare
OKGIIK_06760 rlmB +0.4 1.6 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
OKGIIK_13685 +0.4 2.0 DNA-3-methyladenine glycosylase compare
OKGIIK_09700 +0.4 2.2 Oxidoreductase compare
OKGIIK_14825 +0.4 1.3 SDR family NAD(P)-dependent oxidoreductase compare
OKGIIK_00390 +0.4 3.2 hypothetical protein compare
OKGIIK_10725 +0.4 1.2 Nucleotidyltransferase compare
OKGIIK_16770 +0.4 2.5 Heme biosynthesis protein HemY compare
OKGIIK_07785 +0.4 1.6 LysR family transcriptional regulator compare
OKGIIK_03790 phoB +0.4 2.2 phosphate regulon transcriptional regulator PhoB compare
OKGIIK_05125 +0.4 1.7 Mechanosensitive ion channel protein MscS compare
OKGIIK_13000 gph +0.4 1.4 HAD family hydrolase compare
OKGIIK_02850 motC +0.4 2.7 flagellar motor protein compare
OKGIIK_14855 dps +0.4 1.3 DNA starvation/stationary phase protection protein compare
OKGIIK_01640 +0.4 1.2 Oxidoreductase compare
OKGIIK_02765 fliJ +0.4 0.9 flagellar export protein FliJ compare
OKGIIK_16080 zapE +0.4 2.7 cell division protein ZapE compare
OKGIIK_12725 +0.4 2.1 Lysophospholipase compare
OKGIIK_16360 +0.4 1.2 VanZ like family compare
OKGIIK_12070 +0.4 2.3 hypothetical protein compare
OKGIIK_04620 +0.4 1.9 hypothetical protein compare
OKGIIK_02385 purR +0.4 2.3 LacI family transcriptional regulator compare
OKGIIK_12995 glk +0.4 2.3 glucokinase compare
OKGIIK_09670 +0.4 2.0 Peptidyl-prolyl cis-trans isomerase compare
OKGIIK_08235 +0.4 0.8 3-dmu-9-3-mt domain-containing protein compare
OKGIIK_10125 glnD +0.4 0.5 [protein-PII] uridylyltransferase compare
OKGIIK_09925 nirD +0.4 2.4 benzene 1,2-dioxygenase compare
OKGIIK_02825 +0.4 1.0 Cobyrinic acid a,c-diamide synthase compare
OKGIIK_14780 +0.4 2.0 RNA polymerase subunit sigma-70 compare
OKGIIK_05680 moxR +0.4 1.4 AAA family ATPase compare
OKGIIK_15100 +0.4 2.0 DNA-binding transcriptional regulator compare
OKGIIK_13625 ubiA +0.4 0.7 4-hydroxybenzoate octaprenyltransferase compare
OKGIIK_00305 +0.4 1.4 Phosphodiesterase compare
OKGIIK_16005 +0.4 1.2 Xanthomonadin biosynthesis protein compare
OKGIIK_13870 +0.4 2.0 Ketosteroid isomerase-related protein compare
OKGIIK_00565 +0.4 1.6 hypothetical protein compare
OKGIIK_16500 +0.4 2.2 Restriction endonuclease compare
OKGIIK_14575 yciW +0.4 1.0 carboxymuconolactone decarboxylase compare
OKGIIK_11265 +0.3 1.9 DNA (Cytosine-5-)-methyltransferase compare
OKGIIK_03935 +0.3 0.9 Enoyl-CoA hydratase compare
OKGIIK_08740 +0.3 1.4 hypothetical protein compare
OKGIIK_14470 +0.3 1.4 PAS domain-containing sensor histidine kinase compare
OKGIIK_16195 +0.3 1.2 Methyltransferase compare
OKGIIK_11375 +0.3 2.8 aldo/keto reductase compare
OKGIIK_01650 +0.3 1.5 Ketoglutarate semialdehyde dehydrogenase compare
OKGIIK_02795 fliP +0.3 1.2 flagellar type III secretion system pore protein FliP compare
OKGIIK_15160 splB +0.3 2.1 DNA repair photolyase compare
OKGIIK_00870 +0.3 1.1 osmotically inducible protein C compare
OKGIIK_04930 +0.3 1.2 30S ribosomal protein THX compare
OKGIIK_11995 +0.3 1.8 efflux RND transporter periplasmic adaptor subunit compare
OKGIIK_10885 dgkA +0.3 1.1 diacylglycerol kinase compare
OKGIIK_11045 +0.3 2.0 Chemotaxis protein CheB compare
OKGIIK_01535 +0.3 2.7 Amino acid transporter compare
OKGIIK_00345 +0.3 1.1 GCN5 family acetyltransferase compare
OKGIIK_09840 trxA +0.3 0.6 thioredoxin compare
OKGIIK_00765 +0.3 2.3 Dihydroorotate dehydrogenase compare
OKGIIK_08425 hutI +0.3 1.5 imidazolonepropionase compare
OKGIIK_06100 +0.3 0.8 DUF2282 domain-containing protein compare
OKGIIK_02810 flhB +0.3 1.3 flagellar biosynthesis protein FlhB compare
OKGIIK_02380 araJ +0.3 2.7 MFS transporter compare
OKGIIK_08610 +0.3 2.2 cysteine dioxygenase compare
OKGIIK_02815 flhA +0.3 2.4 flagellar biosynthesis protein FlhA compare
OKGIIK_11315 +0.3 1.8 Peptide ABC transporter permease compare
OKGIIK_14500 +0.3 1.7 Glycosyl transferase family 2 compare
OKGIIK_00525 +0.3 1.5 PEROXIDASE-4 domain-containing protein compare
OKGIIK_16045 +0.3 1.1 Beta-ketoacyl-[acyl-carrier-protein] synthase II compare
OKGIIK_05030 +0.3 1.4 Fasciclin compare
OKGIIK_09525 yciI +0.3 0.7 YCII domain-containing protein compare
OKGIIK_14985 +0.3 0.8 hypothetical protein compare
OKGIIK_03840 ylaK +0.3 1.9 phosphate starvation-inducible protein PhoH compare
OKGIIK_05980 cysG +0.3 1.3 siroheme synthase CysG compare
OKGIIK_01300 +0.3 2.6 Multifunctional fusion protein compare
OKGIIK_11775 +0.3 1.9 SAM-dependent methyltransferase compare
OKGIIK_09930 +0.3 1.4 GNAT family N-acetyltransferase compare
OKGIIK_08815 +0.3 1.1 hypothetical protein compare
OKGIIK_14515 lpdA +0.3 2.3 pyridine nucleotide-disulfide oxidoreductase compare
OKGIIK_11435 nrdR +0.3 0.9 transcriptional regulator NrdR compare
OKGIIK_12270 crp +0.3 2.4 cAMP-activated global transcriptional regulator CRP compare
OKGIIK_05185 +0.3 2.3 hypothetical protein compare
OKGIIK_11020 +0.3 1.1 hypothetical protein compare
OKGIIK_11645 +0.3 1.9 M23 family peptidase compare
OKGIIK_16510 +0.3 0.8 DUF2244 domain-containing protein compare
OKGIIK_01585 yceI +0.3 1.1 polyisoprenoid-binding protein compare
OKGIIK_16420 +0.3 1.1 hypothetical protein compare
OKGIIK_08905 recT +0.3 0.9 recombination protein RecT compare
OKGIIK_03330 citB +0.3 0.4 DNA-binding response regulator compare
OKGIIK_08365 adaA +0.3 1.5 Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains compare
OKGIIK_12410 baeS +0.3 2.1 histidine kinase compare
OKGIIK_00450 cls +0.3 2.0 cardiolipin synthase compare
OKGIIK_05990 hxlR +0.3 1.0 transcriptional regulator compare
OKGIIK_11010 +0.3 1.1 Type II secretion system protein N compare
OKGIIK_14540 +0.3 0.5 DUF2282 domain-containing protein compare
OKGIIK_05250 +0.3 1.0 hypothetical protein compare
OKGIIK_11990 acrB +0.3 2.4 acriflavine resistance protein B compare
OKGIIK_12550 +0.3 1.8 ATP-grasp domain-containing protein compare
OKGIIK_03215 +0.3 1.8 hypothetical protein compare
OKGIIK_07030 +0.3 1.5 YciI family protein compare
OKGIIK_11190 +0.3 0.6 WGR domain-containing protein compare
OKGIIK_00295 +0.3 1.8 DUF3016 domain-containing protein compare
OKGIIK_00910 +0.3 1.7 Alginate-exp domain-containing protein compare
OKGIIK_02560 yggX +0.3 1.4 oxidative damage protection protein compare
OKGIIK_00815 +0.3 1.1 GNAT family acetyltransferase compare
OKGIIK_07050 msrA +0.3 1.8 peptide-methionine (S)-S-oxide reductase compare
OKGIIK_05000 mtnB +0.3 1.8 methylthioribulose 1-phosphate dehydratase compare
OKGIIK_13165 pip +0.3 1.3 prolyl aminopeptidase compare
OKGIIK_14260 +0.3 1.6 MBL fold metallo-hydrolase compare
OKGIIK_04340 yhfA +0.3 1.1 peroxiredoxin compare
OKGIIK_13770 dprA +0.3 0.8 DNA-processing protein DprA compare
OKGIIK_05755 +0.3 2.0 GlcNAc-PI de-N-acetylase compare
OKGIIK_14735 +0.3 1.3 hypothetical protein compare
OKGIIK_02755 +0.3 1.4 Flagellar assembly protein FliH compare
OKGIIK_00065 +0.3 1.8 Gluconate 2-dehydrogenase compare
OKGIIK_00615 +0.3 1.7 hypothetical protein compare
OKGIIK_05130 +0.3 2.0 Aldehyde-activating protein compare
OKGIIK_13665 bioH +0.3 1.5 pimeloyl-ACP methyl ester esterase BioH compare
OKGIIK_04615 +0.3 1.2 Copper-binding protein compare
OKGIIK_02310 purN +0.3 1.1 phosphoribosylglycinamide formyltransferase compare
OKGIIK_12775 fabG +0.3 0.8 SDR family oxidoreductase compare
OKGIIK_16280 +0.3 1.7 Peptidase M28 compare
OKGIIK_12500 +0.3 0.8 2-keto-3-deoxy-galactonokinase compare
OKGIIK_13705 ilvA +0.3 0.7 serine dehydratase compare
OKGIIK_03155 +0.3 1.1 Copper ABC transporter ATP-binding protein compare
OKGIIK_08540 phaR +0.3 1.4 polyhydroxyalkanoate synthesis repressor PhaR compare
OKGIIK_10205 rnhB +0.3 1.5 ribonuclease HII compare
OKGIIK_05035 +0.3 1.3 anti-sigma factor compare
OKGIIK_01990 yotD +0.3 1.6 rubrerythrin compare
OKGIIK_07130 +0.3 1.4 DUF4115 domain-containing protein compare
OKGIIK_12340 +0.3 0.5 hypothetical protein compare
OKGIIK_10230 +0.3 1.5 Bulb-type lectin domain-containing protein compare
OKGIIK_16795 +0.3 1.1 EamA-like transporter family compare
OKGIIK_12530 +0.3 1.5 UmuC domain-containing protein compare
OKGIIK_02900 +0.3 1.5 Chemotaxis protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp. FW510-T8 in stress experiments

For stress Cobalt chloride hexahydrate across organisms