Experiment set1S141 for Escherichia coli HS(pFamp)R (ATCC 700891)

Compare to:

lib only

200 most important genes:

  gene name fitness t score description  
OHPLBJKB_01653 -3.9 -2.7 hypothetical protein compare
OHPLBJKB_01663 -3.5 -2.4 dTDP-4-dehydrorhamnose 3,5-epimerase compare
OHPLBJKB_01652 -3.2 -3.0 hypothetical protein compare
OHPLBJKB_01662 -2.9 -5.8 dTDP-4-dehydrorhamnose reductase compare
OHPLBJKB_01418 -2.5 -2.4 NAD(P)H-quinone oxidoreductase subunit 3 compare
OHPLBJKB_03543 -2.5 -1.7 Aconitate hydratase B compare
OHPLBJKB_04276 -2.3 -2.2 ATP-dependent DNA helicase Rep compare
OHPLBJKB_04393 -2.2 -2.0 hypothetical protein compare
OHPLBJKB_02047 -2.2 -2.5 Major outer membrane prolipoprotein Lpp compare
OHPLBJKB_00821 -2.1 -4.0 Tyrosine recombinase XerD compare
OHPLBJKB_02778 -2.1 -2.4 DNA translocase FtsK compare
OHPLBJKB_01422 -2.1 -4.4 NADH-quinone oxidoreductase subunit F compare
OHPLBJKB_01420 -2.1 -4.9 NADH-quinone oxidoreductase subunit C/D compare
OHPLBJKB_03032 -2.0 -2.9 Ferric uptake regulation protein compare
OHPLBJKB_00496 -1.9 -3.4 Nitrogen regulatory protein compare
OHPLBJKB_00498 -1.9 -2.2 RNA polymerase sigma-54 factor compare
OHPLBJKB_01650 -1.9 -2.1 putative low molecular weight protein-tyrosine-phosphatase AmsI compare
OHPLBJKB_01428 -1.9 -5.6 NADH-quinone oxidoreductase subunit L compare
OHPLBJKB_01425 -1.8 -2.7 NADH-quinone oxidoreductase subunit I compare
OHPLBJKB_01426 -1.8 -2.3 NADH-quinone oxidoreductase subunit J compare
OHPLBJKB_01419 -1.8 -5.9 NADH-quinone oxidoreductase subunit B compare
OHPLBJKB_02603 -1.7 -6.4 Dihydroorotase compare
OHPLBJKB_03865 -1.7 -3.0 Adenylosuccinate synthetase compare
OHPLBJKB_01423 -1.7 -6.3 NADH-quinone oxidoreductase subunit G compare
OHPLBJKB_01427 -1.7 -3.3 NADH-quinone oxidoreductase subunit K compare
OHPLBJKB_04235 -1.7 -2.5 Magnesium transport protein CorA compare
OHPLBJKB_04088 -1.6 -2.6 Soluble pyridine nucleotide transhydrogenase compare
OHPLBJKB_01201 -1.6 -3.9 'Inosine-5'-monophosphate dehydrogenase' transl_table=11 compare
OHPLBJKB_00809 -1.6 -3.6 2-octaprenylphenol hydroxylase compare
OHPLBJKB_04239 -1.6 -2.8 Tyrosine recombinase XerC compare
OHPLBJKB_02496 -1.6 -1.8 Murein tetrapeptide carboxypeptidase compare
OHPLBJKB_03497 -1.6 -2.3 Bifunctional uridylyltransferase/uridylyl-removing enzyme compare
OHPLBJKB_02976 -1.6 -3.7 Protein TolQ compare
OHPLBJKB_01387 -1.6 -3.0 tRNA pseudouridine synthase A compare
OHPLBJKB_03796 -1.6 -1.8 Trehalose-6-phosphate hydrolase compare
OHPLBJKB_01430 -1.5 -3.9 NADH-quinone oxidoreductase subunit N compare
OHPLBJKB_02992 -1.5 -4.4 Succinate dehydrogenase iron-sulfur subunit compare
OHPLBJKB_00071 -1.5 -1.7 Lipopolysaccharide core biosynthesis protein RfaG compare
OHPLBJKB_00210 -1.5 -4.0 Low-affinity inorganic phosphate transporter 1 compare
OHPLBJKB_02991 -1.5 -2.9 2-oxoglutarate dehydrogenase E1 component compare
OHPLBJKB_03244 -1.5 -2.9 Cytochrome bo(3) ubiquinol oxidase subunit 4 compare
OHPLBJKB_02990 -1.4 -2.1 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
OHPLBJKB_01218 -1.4 -2.5 hypothetical protein compare
OHPLBJKB_00092 -1.4 -2.4 Serine acetyltransferase compare
OHPLBJKB_03501 -1.4 -2.6 Periplasmic serine endoprotease DegP compare
OHPLBJKB_03885 -1.4 -5.2 Elongation factor P--(R)-beta-lysine ligase compare
OHPLBJKB_00314 -1.4 -4.8 3-dehydroquinate synthase compare
OHPLBJKB_00519 -1.4 -1.8 Transcription elongation factor GreA compare
OHPLBJKB_04204 -1.3 -3.2 Trk system potassium uptake protein TrkH compare
OHPLBJKB_02448 -1.3 -1.2 DNA-binding protein H-NS compare
OHPLBJKB_03896 -1.3 -5.8 L-lysine 2,3-aminomutase compare
OHPLBJKB_01433 -1.3 -1.6 hypothetical protein compare
OHPLBJKB_02973 -1.3 -5.6 Protein TolB compare
OHPLBJKB_02975 -1.3 -2.5 Protein TolR compare
OHPLBJKB_02031 -1.3 -2.4 3-dehydroquinate dehydratase compare
OHPLBJKB_03624 -1.2 -7.4 Carbamoyl-phosphate synthase large chain compare
OHPLBJKB_02995 -1.2 -2.5 Succinate dehydrogenase cytochrome b556 subunit compare
OHPLBJKB_00298 -1.2 -2.9 Transcriptional regulatory protein OmpR compare
OHPLBJKB_02721 -1.2 -4.6 Dihydroorotate dehydrogenase (quinone) compare
OHPLBJKB_01649 -1.2 -5.9 hypothetical protein compare
OHPLBJKB_03607 -1.2 -4.5 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical' transl_table=11 compare
OHPLBJKB_04209 -1.2 -5.5 NAD(P)H-flavin reductase compare
OHPLBJKB_02401 -1.2 -4.7 'Orotidine 5'-phosphate decarboxylase' transl_table=11 compare
OHPLBJKB_03517 -1.1 -4.8 RNA polymerase-binding transcription factor DksA compare
OHPLBJKB_03236 -1.1 -5.1 ATP-dependent Clp protease proteolytic subunit compare
OHPLBJKB_03789 -1.1 -6.6 Aspartate carbamoyltransferase catalytic subunit compare
OHPLBJKB_00161 -1.1 -1.4 tRNA-Pro compare
OHPLBJKB_00471 -1.1 -2.2 Inner membrane protein YhcB compare
OHPLBJKB_04326 -1.1 -3.2 Phosphate transport system permease protein PstC compare
OHPLBJKB_00468 -1.1 -3.7 Malate dehydrogenase compare
OHPLBJKB_03625 -1.1 -6.3 Carbamoyl-phosphate synthase small chain compare
OHPLBJKB_01429 -1.1 -3.5 NADH-quinone oxidoreductase subunit M compare
OHPLBJKB_02993 -1.1 -6.6 Succinate dehydrogenase flavoprotein subunit compare
OHPLBJKB_00908 -1.1 -2.3 RecBCD enzyme subunit RecC compare
OHPLBJKB_00102 -1.0 -3.8 Mannitol-1-phosphate 5-dehydrogenase compare
OHPLBJKB_01131 -1.0 -5.7 ATP-dependent RNA helicase SrmB compare
OHPLBJKB_00278 -1.0 -4.8 Aerobic glycerol-3-phosphate dehydrogenase compare
OHPLBJKB_03605 -1.0 -2.8 Ribosomal RNA small subunit methyltransferase A compare
OHPLBJKB_03579 -1.0 -4.4 Catabolite repressor/activator compare
OHPLBJKB_01424 -1.0 -2.6 NADH-quinone oxidoreductase subunit H compare
OHPLBJKB_01661 -1.0 -4.2 Glucose-1-phosphate thymidylyltransferase 2 compare
OHPLBJKB_02988 -1.0 -4.3 Succinate--CoA ligase [ADP-forming] subunit alpha compare
OHPLBJKB_02996 -1.0 -2.7 hypothetical protein compare
OHPLBJKB_04438 -1.0 -1.8 Toxin CcdB compare
OHPLBJKB_02974 -1.0 -3.5 Protein TolA compare
OHPLBJKB_04217 -1.0 -2.1 hypothetical protein compare
OHPLBJKB_03803 -0.9 -5.0 Fructose-1,6-bisphosphatase class 1 compare
OHPLBJKB_02997 -0.9 -5.4 Citrate synthase compare
OHPLBJKB_00818 -0.9 -1.7 FAD assembly factor SdhE compare
OHPLBJKB_02399 -0.9 -1.3 Osmotically-inducible lipoprotein B compare
OHPLBJKB_03410 -0.9 -2.2 hypothetical protein compare
OHPLBJKB_00876 -0.9 -1.4 hypothetical protein compare
OHPLBJKB_04371 -0.9 -1.5 Cyclic di-GMP phosphodiesterase PdeL compare
OHPLBJKB_01087 -0.9 -2.6 SsrA-binding protein compare
OHPLBJKB_02994 -0.9 -4.1 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
OHPLBJKB_00150 -0.9 -2.2 Cold shock protein CspA compare
OHPLBJKB_04425 -0.9 -1.4 hypothetical protein compare
OHPLBJKB_03904 -0.9 -5.4 Aspartate ammonia-lyase compare
OHPLBJKB_00078 -0.9 -1.7 O-antigen ligase compare
OHPLBJKB_01138 -0.9 -3.0 Elongation factor 4 compare
OHPLBJKB_02972 -0.9 -3.0 Peptidoglycan-associated lipoprotein compare
OHPLBJKB_03028 -0.9 -3.4 Negative modulator of initiation of replication compare
OHPLBJKB_01254 -0.9 -3.3 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
OHPLBJKB_00872 -0.8 -1.6 hypothetical protein compare
OHPLBJKB_01785 -0.8 -2.4 hypothetical protein compare
OHPLBJKB_03519 -0.8 -4.6 Poly(A) polymerase I compare
OHPLBJKB_02989 -0.8 -2.7 Succinate--CoA ligase [ADP-forming] subunit beta compare
OHPLBJKB_00060 -0.8 -4.5 Orotate phosphoribosyltransferase compare
OHPLBJKB_04392 -0.8 -0.9 hypothetical protein compare
OHPLBJKB_04123 -0.8 -1.6 Cell division protein ZapB compare
OHPLBJKB_02780 -0.8 -1.1 Thioredoxin reductase compare
OHPLBJKB_01045 -0.8 -5.5 Glutamate--cysteine ligase compare
OHPLBJKB_04059 -0.8 -1.0 Sulfur carrier protein ThiS compare
OHPLBJKB_03683 -0.8 -2.5 putative metal-dependent hydrolase YjjV compare
OHPLBJKB_02457 -0.8 -1.6 Nitrate reductase molybdenum cofactor assembly chaperone NarJ compare
OHPLBJKB_02224 -0.8 -1.4 Glutamate decarboxylase beta compare
OHPLBJKB_04237 -0.8 -4.9 DNA helicase II compare
OHPLBJKB_00422 -0.8 -3.1 Shikimate dehydrogenase (NADP(+)) compare
OHPLBJKB_02153 -0.8 -1.4 HTH-type transcriptional regulator GadW compare
OHPLBJKB_03235 -0.7 -2.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
OHPLBJKB_03396 -0.7 -1.8 tRNA-Thr compare
OHPLBJKB_00475 -0.7 -3.6 Stringent starvation protein A compare
OHPLBJKB_02033 -0.7 -1.9 Inner membrane transport protein YdiN compare
OHPLBJKB_02074 -0.7 -2.2 Lactoylglutathione lyase compare
OHPLBJKB_03158 -0.7 -2.5 N5-carboxyaminoimidazole ribonucleotide mutase compare
OHPLBJKB_04325 -0.7 -3.5 Phosphate-binding protein PstS compare
OHPLBJKB_01366 -0.7 -2.0 Phosphohistidine phosphatase SixA compare
OHPLBJKB_00458 -0.7 -3.7 Ribonuclease G compare
OHPLBJKB_00865 -0.7 -1.5 hypothetical protein compare
OHPLBJKB_04327 -0.7 -2.6 Phosphate transport system permease protein PstA compare
OHPLBJKB_00525 -0.7 -1.4 Protein-export membrane protein SecG compare
OHPLBJKB_00274 -0.7 -1.3 hypothetical protein compare
OHPLBJKB_00237 -0.7 -2.3 hypothetical protein compare
OHPLBJKB_03234 -0.7 -3.0 Lon protease compare
OHPLBJKB_04044 -0.7 -3.5 Phosphoribosylamine--glycine ligase compare
OHPLBJKB_02636 -0.7 -1.8 hypothetical protein compare
OHPLBJKB_02094 -0.7 -1.6 Electron transport complex subunit RsxE compare
OHPLBJKB_01634 -0.7 -1.8 hypothetical protein compare
OHPLBJKB_00531 -0.7 -0.8 Transcription termination/antitermination protein NusA compare
OHPLBJKB_04353 -0.7 -1.8 Carboxylesterase A compare
OHPLBJKB_01393 -0.7 -4.3 Amidophosphoribosyltransferase compare
OHPLBJKB_02388 -0.6 -1.6 Peptide transport periplasmic protein SapA compare
OHPLBJKB_03784 -0.6 -3.0 putative protein YjgL compare
OHPLBJKB_01566 -0.6 -1.4 hypothetical protein compare
OHPLBJKB_02664 -0.6 -1.8 putative protein YccJ compare
OHPLBJKB_04135 -0.6 -2.5 ATP-dependent 6-phosphofructokinase isozyme 1 compare
OHPLBJKB_04193 -0.6 -2.5 Thiol:disulfide interchange protein DsbA compare
OHPLBJKB_02365 -0.6 -1.7 Beta-phosphoglucomutase compare
OHPLBJKB_04118 -0.6 -1.5 Cell division protein FtsN compare
OHPLBJKB_02835 -0.6 -1.3 hypothetical protein compare
OHPLBJKB_01367 -0.6 -1.3 putative fimbrial-like protein YfcV compare
OHPLBJKB_02409 -0.6 -1.8 HTH-type transcriptional regulator CysB compare
OHPLBJKB_00536 -0.6 -3.4 Polyribonucleotide nucleotidyltransferase compare
OHPLBJKB_04354 -0.6 -0.8 Outer membrane protease OmpP compare
OHPLBJKB_01150 -0.6 -5.0 Phosphoribosylformylglycinamidine synthase compare
OHPLBJKB_00579 -0.6 -3.5 Glycerate 2-kinase compare
OHPLBJKB_04043 -0.6 -4.3 Bifunctional purine biosynthesis protein PurH compare
OHPLBJKB_00257 -0.6 -1.9 hypothetical protein compare
OHPLBJKB_00604 -0.6 -2.5 Putative L-lactate dehydrogenase operon regulatory protein compare
OHPLBJKB_02856 -0.6 -1.0 hypothetical protein compare
OHPLBJKB_03243 -0.6 -2.5 Cytochrome bo(3) ubiquinol oxidase subunit 3 compare
OHPLBJKB_00217 -0.6 -1.0 ISAs1 family transposase ISEc1 compare
OHPLBJKB_01967 -0.6 -1.4 Putative NAD(P)H nitroreductase YdjA compare
OHPLBJKB_04314 -0.6 -1.9 ATP synthase protein I compare
OHPLBJKB_01660 -0.6 -2.1 dTDP-glucose 4,6-dehydratase 2 compare
OHPLBJKB_02521 -0.6 -1.8 hypothetical protein compare
OHPLBJKB_01506 -0.6 -2.1 Ferredoxin-type protein NapG compare
OHPLBJKB_03864 -0.6 -2.6 HTH-type transcriptional repressor NsrR compare
OHPLBJKB_01135 -0.6 -1.0 Anti-sigma-E factor RseA compare
OHPLBJKB_02071 -0.6 -2.0 Glutaredoxin 4 compare
OHPLBJKB_03116 -0.6 -1.6 Ferric enterobactin transport system permease protein FepD compare
OHPLBJKB_03422 -0.6 -1.1 hypothetical protein compare
OHPLBJKB_02493 -0.5 -1.1 hypothetical protein compare
OHPLBJKB_01863 -0.5 -2.0 Dihydroneopterin triphosphate diphosphatase compare
OHPLBJKB_00277 -0.5 -1.6 hypothetical protein compare
OHPLBJKB_00289 -0.5 -1.9 Fe/S biogenesis protein NfuA compare
OHPLBJKB_04247 -0.5 -2.4 Adenylate cyclase compare
OHPLBJKB_04181 -0.5 -3.7 GTP-binding protein TypA/BipA compare
OHPLBJKB_01731 -0.5 -1.5 hypothetical protein compare
OHPLBJKB_00300 -0.5 -3.8 Phosphoenolpyruvate carboxykinase (ATP) compare
OHPLBJKB_03867 -0.5 -2.4 Modulator of FtsH protease HflC compare
OHPLBJKB_00355 -0.5 -0.8 Protein SlyX compare
OHPLBJKB_03270 -0.5 -2.5 Queuine tRNA-ribosyltransferase compare
OHPLBJKB_01937 -0.5 -1.0 Protein YoaG compare
OHPLBJKB_02668 -0.5 -1.1 Chaperone modulatory protein CbpM compare
OHPLBJKB_01059 -0.5 -1.4 Glutaredoxin-like protein NrdH compare
OHPLBJKB_04411 -0.5 -1.7 Pilin compare
OHPLBJKB_02810 -0.5 -1.3 Inner membrane protein YbjO compare
OHPLBJKB_01386 -0.5 -1.0 USG-1 protein compare
OHPLBJKB_01641 -0.5 -0.8 dCTP deaminase compare
OHPLBJKB_03017 -0.5 -1.0 Protein RhsC compare
OHPLBJKB_01904 -0.5 -2.7 Transcriptional regulator KdgR compare
OHPLBJKB_02492 -0.5 -1.8 hypothetical protein compare
OHPLBJKB_01879 -0.5 -1.0 KHG/KDPG aldolase compare
OHPLBJKB_01824 -0.5 -1.3 Bacterial non-heme ferritin compare
OHPLBJKB_00714 -0.5 -2.0 hypothetical protein compare
OHPLBJKB_01789 -0.5 -1.6 Flagellar assembly protein FliH compare
OHPLBJKB_00059 -0.5 -2.0 Ribonuclease PH compare
OHPLBJKB_03172 -0.5 -1.4 Hydroxypyruvate isomerase compare
OHPLBJKB_01298 -0.5 -3.2 Thiosulfate-binding protein compare


Specific Phenotypes

None in this experiment

For Escherichia coli HS(pFamp)R (ATCC 700891) in phage experiments