Experiment set1S14 for Rhodanobacter sp. FW510-T8

Compare to:

R2A_PIPES with Cadmium chloride 128 uM

200 most important genes:

  gene name fitness t score description  
OKGIIK_14565 -4.2 -1.5 Lipid A 3-O-deacylase (PagL) compare
OKGIIK_06880 -3.9 -1.5 Phosphatase NudJ compare
OKGIIK_09230 -2.5 -1.7 RecBCD enzyme subunit RecB compare
OKGIIK_12705 pta -2.3 -2.2 NADP-dependent malic enzyme compare
OKGIIK_00755 pdhA -2.3 -2.2 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
OKGIIK_01040 -2.1 -2.5 Preprotein translocase subunit TatC compare
OKGIIK_13570 thrC -2.1 -1.5 threonine synthase compare
OKGIIK_10175 rseP -2.0 -1.8 RIP metalloprotease RseP compare
OKGIIK_12885 -2.0 -2.1 hypothetical protein compare
OKGIIK_16915 rfaB -2.0 -10.6 glycosyl transferase compare
OKGIIK_15615 -2.0 -2.4 Antitermination protein NusB compare
OKGIIK_01310 gcvH -1.9 -2.9 glycine cleavage system protein GcvH compare
OKGIIK_05630 elaC -1.9 -2.6 Ribonuclease BN, tRNA processing enzyme compare
OKGIIK_01240 -1.9 -3.4 EamA domain-containing protein compare
OKGIIK_11415 ldcA -1.9 -3.5 muramoyltetrapeptide carboxypeptidase compare
OKGIIK_07300 -1.9 -2.2 carbamoyl phosphate synthase small subunit compare
OKGIIK_01560 -1.9 -1.5 HTH cro/C1-type domain-containing protein compare
OKGIIK_11005 suhB -1.8 -2.9 Archaeal fructose-1,6-bisphosphatase or related enzyme, inositol monophosphatase family compare
OKGIIK_11075 gshB -1.8 -3.7 glutathione synthase compare
OKGIIK_15695 -1.8 -5.9 MFS transporter compare
OKGIIK_04120 -1.8 -1.4 DNA-binding protein compare
OKGIIK_14540 -1.8 -0.9 DUF2282 domain-containing protein compare
OKGIIK_08845 -1.7 -2.4 hypothetical protein compare
OKGIIK_09840 trxA -1.7 -2.0 thioredoxin compare
OKGIIK_08635 -1.7 -2.8 hypothetical protein compare
OKGIIK_08670 -1.7 -2.3 N-acetyltransferase domain-containing protein compare
OKGIIK_12965 -1.7 -4.3 glutamate--cysteine ligase compare
OKGIIK_12565 -1.7 -2.2 hypothetical protein compare
OKGIIK_14155 -1.6 -3.6 Secretion protein HlyD compare
OKGIIK_01155 cpsB -1.6 -4.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
OKGIIK_08315 -1.6 -2.1 3-demethylubiquinone-9 3-methyltransferase compare
OKGIIK_10960 -1.6 -1.3 ABC transporter compare
OKGIIK_10125 glnD -1.6 -1.8 [protein-PII] uridylyltransferase compare
OKGIIK_08235 -1.5 -2.2 3-dmu-9-3-mt domain-containing protein compare
OKGIIK_01845 kup -1.5 -2.3 potassium uptake protein compare
OKGIIK_15520 pgi -1.5 -4.2 glucose-6-phosphate isomerase compare
OKGIIK_04850 trpA -1.5 -3.0 tryptophan synthase subunit alpha compare
OKGIIK_11115 fiu -1.5 -2.0 Outer membrane receptor for monomeric catechols compare
OKGIIK_16620 ccmA -1.5 -4.5 ABC transporter compare
OKGIIK_04230 -1.5 -3.2 hypothetical protein compare
OKGIIK_00580 -1.5 -2.1 hypothetical protein compare
OKGIIK_03430 -1.5 -3.3 N-acetylmuramoyl-L-alanine amidase compare
OKGIIK_11505 purL -1.5 -3.2 phosphoribosylformylglycinamidine synthase compare
OKGIIK_01060 gap -1.4 -4.8 type I glyceraldehyde-3-phosphate dehydrogenase compare
OKGIIK_07105 -1.4 -1.9 Ribosomal-protein-serine acetyltransferase compare
OKGIIK_06260 -1.4 -6.3 TolC family protein compare
OKGIIK_03375 -1.4 -2.0 hypothetical protein compare
OKGIIK_11255 yjjB -1.4 -3.0 Putative threonine/serine exporter compare
OKGIIK_07250 lapB -1.4 -4.8 lipopolysaccharide assembly protein LapB compare
OKGIIK_11965 mscL -1.4 -1.5 large-conductance mechanosensitive channel protein MscL compare
OKGIIK_16375 folA -1.3 -2.2 deaminase compare
OKGIIK_11330 lolD -1.3 -1.7 ABC transporter ATP-binding protein compare
OKGIIK_07900 rpoE -1.3 -4.9 RNA polymerase sigma factor RpoE compare
OKGIIK_15045 -1.3 -2.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
OKGIIK_12595 aceF -1.3 -2.5 dihydrolipoyllysine-residue acetyltransferase compare
OKGIIK_01165 rfbC -1.3 -3.0 dTDP-4-dehydrorhamnose 3,5-epimerase compare
OKGIIK_14160 -1.3 -3.6 ABC transporter ATP-binding protein compare
OKGIIK_03230 -1.3 -2.4 hypothetical protein compare
OKGIIK_13615 ilvN -1.2 -1.5 acetolactate synthase small subunit compare
OKGIIK_02315 purM -1.2 -2.5 phosphoribosylformylglycinamidine cyclo-ligase compare
OKGIIK_16060 gpmA -1.2 -2.7 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
OKGIIK_07430 secG -1.2 -3.3 preprotein translocase subunit SecG compare
OKGIIK_03035 -1.2 -7.5 hypothetical protein compare
OKGIIK_03000 degQ -1.2 -4.9 peptidase S1 compare
OKGIIK_14165 lolE -1.2 -6.8 ABC transporter permease compare
OKGIIK_01195 -1.2 -2.6 ABC transporter, ATP-binding protein compare
OKGIIK_16615 -1.2 -7.2 ABC transporter permease compare
OKGIIK_07295 carB -1.2 -2.6 carbamoyl-phosphate synthase large subunit compare
OKGIIK_09430 argH -1.1 -3.3 argininosuccinate lyase compare
OKGIIK_07205 alkB -1.1 -2.4 DNA oxidative demethylase AlkB compare
OKGIIK_01210 gmd -1.1 -6.4 GDP-mannose 4,6-dehydratase compare
OKGIIK_05620 rfaF -1.1 -2.7 ADP-heptose--LPS heptosyltransferase compare
OKGIIK_03330 citB -1.1 -1.2 DNA-binding response regulator compare
OKGIIK_12280 trpC -1.1 -2.4 indole-3-glycerol phosphate synthase TrpC compare
OKGIIK_13750 purD -1.1 -1.6 phosphoribosylamine--glycine ligase compare
OKGIIK_14345 nagA -1.1 -4.2 N-acetylglucosamine-6-phosphate deacetylase compare
OKGIIK_07255 -1.1 -1.7 LapA-dom domain-containing protein compare
OKGIIK_14175 -1.1 -6.4 Sensor protein QseC compare
OKGIIK_06110 -1.0 -2.2 DUF2063 domain-containing protein compare
OKGIIK_01190 -1.0 -1.6 Transport permease protein compare
OKGIIK_14150 -1.0 -6.3 Alpha/beta hydrolase compare
OKGIIK_07125 -1.0 -1.8 Ancillary SecYEG translocon subunit compare
OKGIIK_14170 -1.0 -5.9 TolC family protein compare
OKGIIK_09310 -1.0 -1.4 DUF6587 domain-containing protein compare
OKGIIK_02610 -1.0 -1.3 MBL fold metallo-hydrolase compare
OKGIIK_14525 -1.0 -4.1 DoxX family protein compare
OKGIIK_15525 tal -0.9 -3.3 transaldolase compare
OKGIIK_16665 -0.9 -2.9 Transcriptional regulator compare
OKGIIK_11105 baeS -0.9 -1.7 sensor histidine kinase compare
OKGIIK_01110 pgk -0.9 -2.8 phosphoglycerate kinase compare
OKGIIK_02255 hprK -0.9 -4.1 HPr(Ser) kinase/phosphatase compare
OKGIIK_16630 -0.9 -2.8 hypothetical protein compare
OKGIIK_09370 fabG -0.9 -2.0 3-hydroxyacyl-CoA dehydrogenase compare
OKGIIK_11495 -0.9 -3.8 Glycosyl transferase family 2 compare
OKGIIK_11085 algH -0.9 -1.1 YqgE/AlgH family protein compare
OKGIIK_01780 -0.9 -1.6 NAD+ synthase compare
OKGIIK_13000 gph -0.9 -2.5 HAD family hydrolase compare
OKGIIK_00715 -0.9 -0.9 glyoxalase compare
OKGIIK_14090 argD -0.9 -4.6 aspartate aminotransferase family protein compare
OKGIIK_02260 raiA -0.9 -4.3 ribosomal subunit interface protein compare
OKGIIK_15710 oapA -0.9 -4.3 peptidase M23 compare
OKGIIK_08735 -0.9 -1.2 hypothetical protein compare
OKGIIK_11815 -0.9 -1.4 GIY-YIG domain-containing protein compare
OKGIIK_06585 ompA -0.9 -4.1 flagellar motor protein MotB compare
OKGIIK_01655 -0.8 -2.8 X-Pro dipeptidase compare
OKGIIK_11180 -0.8 -2.4 Shikimate kinase compare
OKGIIK_11725 mraZ -0.8 -1.7 division/cell wall cluster transcriptional repressor MraZ compare
OKGIIK_16340 -0.8 -2.7 pteridine reductase compare
OKGIIK_10005 queA -0.8 -2.2 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
OKGIIK_07060 -0.8 -1.2 hypothetical protein compare
OKGIIK_05020 -0.8 -1.4 NUDIX hydrolase compare
OKGIIK_04425 -0.8 -2.1 Transcriptional regulator compare
OKGIIK_15580 -0.8 -2.8 hypothetical protein compare
OKGIIK_13155 -0.8 -0.9 AsnC family transcriptional regulator compare
OKGIIK_08355 -0.8 -1.1 hypothetical protein compare
OKGIIK_09510 -0.8 -2.0 phytoene synthase compare
OKGIIK_07670 ccoP -0.8 -1.3 cytochrome-c oxidase, cbb3-type subunit III compare
OKGIIK_11605 -0.8 -1.7 Acetoin utilization protein compare
OKGIIK_01235 -0.8 -4.7 Glycosyl transferases group 1 compare
OKGIIK_06755 rnr -0.8 -5.2 ribonuclease R compare
OKGIIK_00685 -0.8 -1.4 hypothetical protein compare
OKGIIK_14590 yigB -0.8 -3.0 haloacid dehalogenase type II compare
OKGIIK_01080 fba1 -0.8 -4.4 fructose-bisphosphate aldolase class I compare
OKGIIK_07140 rlmN -0.8 -1.0 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
OKGIIK_08705 -0.8 -0.6 hypothetical protein compare
OKGIIK_00530 -0.8 -1.6 hypothetical protein compare
OKGIIK_11240 -0.8 -2.6 DUF4124 domain-containing protein compare
OKGIIK_03615 yhaK -0.8 -2.3 Pirin compare
OKGIIK_02680 flgH -0.8 -2.3 flagellar basal body L-ring protein FlgH compare
OKGIIK_01220 -0.8 -5.2 Phosphomannomutase compare
OKGIIK_00590 vgrG -0.8 -2.0 baseplate assembly protein compare
OKGIIK_09975 -0.8 -3.3 Aminoglycoside phosphotransferase compare
OKGIIK_11370 -0.8 -0.7 Hemin transporter compare
OKGIIK_01215 -0.8 -3.4 GDP-mannose 4,6 dehydratase compare
OKGIIK_15570 -0.8 -2.7 GCN5 family acetyltransferase compare
OKGIIK_03645 htpX -0.7 -2.1 protease HtpX compare
OKGIIK_11390 pgpA -0.7 -0.9 Phosphatidylglycerophosphatase A compare
OKGIIK_09135 caiA -0.7 -3.5 acyl-CoA dehydrogenase compare
OKGIIK_13490 ugpQ -0.7 -3.3 Glycerophosphoryl diester phosphodiesterase compare
OKGIIK_01175 rfbB -0.7 -4.0 dTDP-glucose 4,6-dehydratase compare
OKGIIK_02250 rapZ -0.7 -3.6 RNase adapter RapZ compare
OKGIIK_01405 -0.7 -1.7 DUF4442 domain-containing protein compare
OKGIIK_08135 mgtE -0.7 -2.0 magnesium transporter compare
OKGIIK_05225 -0.7 -2.9 Membrane fusion protein (MFP) family protein compare
OKGIIK_11960 -0.7 -1.6 Fumarylacetoacetate hydrolase compare
OKGIIK_11880 Gly_trna -0.7 -3.2 tRNA-Gly compare
OKGIIK_11110 ompR -0.7 -2.7 DNA-binding response regulator compare
OKGIIK_09775 -0.7 -2.6 Acetyltransferase compare
OKGIIK_06740 gcvP2 -0.7 -3.2 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain compare
OKGIIK_13745 -0.7 -4.6 Type III secretion system lipoprotein chaperone (YscW) compare
OKGIIK_06315 -0.7 -1.3 Transposase compare
OKGIIK_09445 -0.7 -1.7 acetylornithine deacetylase compare
OKGIIK_01185 -0.7 -4.0 Glycosyl transferase compare
OKGIIK_05030 -0.7 -2.5 Fasciclin compare
OKGIIK_10980 -0.7 -1.3 DUF4097 domain-containing protein compare
OKGIIK_05270 -0.7 -2.5 Molybdopterin molybdenumtransferase compare
OKGIIK_06295 -0.7 -3.1 Cation efflux family compare
OKGIIK_12285 trpD -0.7 -0.9 anthranilate phosphoribosyltransferase compare
OKGIIK_05540 -0.7 -1.9 heavy metal-responsive transcriptional regulator compare
OKGIIK_06910 serC -0.7 -3.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
OKGIIK_08930 -0.7 -2.2 hypothetical protein compare
OKGIIK_09185 metH1 -0.7 -3.1 5-methyltetrahydrofolate--homocysteine methyltransferase compare
OKGIIK_15705 -0.7 -2.0 anhydro-N-acetylmuramic acid kinase compare
OKGIIK_07400 -0.7 -0.7 4a-hydroxytetrahydrobiopterin dehydratase compare
OKGIIK_12455 -0.7 -3.1 2-hydroxy-palmitic acid dioxygenase Mpo1-like compare
OKGIIK_07200 -0.7 -2.9 Proline hydroxylase compare
OKGIIK_14110 fabB -0.7 -1.9 3-oxoacyl-(acyl-carrier-protein) synthase compare
OKGIIK_17055 -0.7 -2.8 Adhesin compare
OKGIIK_07305 -0.7 -3.0 2OG-FeII-Oxy-4 domain-containing protein compare
OKGIIK_10810 -0.7 -2.6 DNA-binding protein compare
OKGIIK_07240 flaA1 -0.7 -3.9 polysaccharide biosynthesis protein compare
OKGIIK_00575 -0.7 -1.9 Contractile injection system tube protein compare
OKGIIK_08650 -0.7 -1.6 hypothetical protein compare
OKGIIK_09355 -0.7 -2.6 DUF1801 domain-containing protein compare
OKGIIK_08540 phaR -0.7 -2.9 polyhydroxyalkanoate synthesis repressor PhaR compare
OKGIIK_06200 -0.7 -1.7 DUF411 domain-containing protein compare
OKGIIK_05885 mtnA -0.7 -1.7 S-methyl-5-thioribose-1-phosphate isomerase compare
OKGIIK_01170 rfbA -0.7 -3.0 glucose-1-phosphate thymidylyltransferase RfbA compare
OKGIIK_03795 -0.7 -4.1 Putative beta-barrel assembly-enhancing protease compare
OKGIIK_04745 -0.7 -1.4 Diadenosine tetraphosphate hydrolase compare
OKGIIK_08625 -0.7 -3.6 Chitinase compare
OKGIIK_06095 -0.7 -1.0 (2Fe-2S)-binding protein compare
OKGIIK_06270 cusA -0.6 -2.8 CusA/CzcA family heavy metal efflux RND transporter compare
OKGIIK_07005 asnB -0.6 -2.8 asparagine synthase B compare
OKGIIK_09580 radA -0.6 -2.2 DNA repair protein RadA compare
OKGIIK_07365 -0.6 -1.3 RnfH family protein compare
OKGIIK_02245 manX -0.6 -2.9 PTS fructose IIA subunit family protein compare
OKGIIK_03070 marC -0.6 -2.5 YhgN family NAAT transporter compare
OKGIIK_12560 dinB -0.6 -1.4 DNA polymerase IV compare
OKGIIK_06265 -0.6 -2.8 Efflux RND transporter periplasmic adaptor subunit compare
OKGIIK_10700 pntA -0.6 -2.3 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha compare
OKGIIK_09760 -0.6 -1.5 2-nitropropane dioxygenase compare
OKGIIK_13770 dprA -0.6 -1.2 DNA-processing protein DprA compare
OKGIIK_05915 pilH -0.6 -2.0 twitching motility response regulator PilH compare
OKGIIK_07225 csaA -0.6 -3.0 tRNA-binding protein compare
OKGIIK_16840 -0.6 -2.6 Redoxin compare
OKGIIK_08855 -0.6 -0.9 hypothetical protein compare
OKGIIK_06150 yjbI -0.6 -2.7 Truncated hemoglobin YjbI compare
OKGIIK_12415 -0.6 -2.8 hypothetical protein compare
OKGIIK_11440 glyA -0.6 -2.7 serine hydroxymethyltransferase compare


Specific Phenotypes

For 2 genes in this experiment

For stress Cadmium chloride in Rhodanobacter sp. FW510-T8

For stress Cadmium chloride across organisms