Experiment set1S14 for Rhodanobacter sp. FW510-T8

Compare to:

R2A_PIPES with Cadmium chloride 128 uM

200 most detrimental genes:

  gene name fitness t score description  
OKGIIK_03885 panB +1.3 2.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
OKGIIK_02790 fliO +1.2 1.7 flagellar biosynthetic protein FliO compare
OKGIIK_03380 +1.2 2.7 Arc family DNA binding domain-containing protein compare
OKGIIK_01830 tACO1 +1.1 1.2 YebC/PmpR family DNA-binding transcriptional regulator compare
OKGIIK_09970 iscR +1.1 2.5 SUF system Fe-S cluster assembly regulator compare
OKGIIK_01825 +1.1 2.6 AB hydrolase-1 domain-containing protein compare
OKGIIK_05065 ybcJ +1.0 1.2 RNA-binding protein compare
OKGIIK_08890 +1.0 2.2 DUF1351 domain-containing protein compare
OKGIIK_00955 +1.0 4.8 Transcriptional regulator compare
OKGIIK_01595 +0.9 1.8 Polyisoprenoid-binding protein compare
OKGIIK_08880 +0.9 1.9 hypothetical protein compare
OKGIIK_06725 rpoE +0.9 1.4 RNA polymerase subunit sigma-70 compare
OKGIIK_13980 Ile2_trna +0.9 1.7 tRNA-Ile2 compare
OKGIIK_05680 moxR +0.9 2.5 AAA family ATPase compare
OKGIIK_16075 +0.9 1.5 Peptidase C13 compare
OKGIIK_02920 tar +0.9 1.7 Methyl-accepting chemotaxis protein (MCP) compare
OKGIIK_14990 +0.9 3.1 DUF883 domain-containing protein compare
OKGIIK_12500 +0.9 2.1 2-keto-3-deoxy-galactonokinase compare
OKGIIK_04885 +0.8 1.0 Outer membrane efflux protein compare
OKGIIK_08285 +0.8 2.0 RNA signal recognition particle compare
OKGIIK_09500 dksA +0.8 1.1 RNA polymerase-binding protein DksA compare
OKGIIK_13915 +0.8 1.7 Glutamine cyclotransferase compare
OKGIIK_16815 +0.8 1.3 DUF3426 domain-containing protein compare
OKGIIK_02225 +0.8 2.3 Conserved hypothetical integral membrane protein compare
OKGIIK_11020 +0.8 2.6 hypothetical protein compare
OKGIIK_14390 +0.8 2.2 DUF4142 domain-containing protein compare
OKGIIK_01650 +0.8 2.5 Ketoglutarate semialdehyde dehydrogenase compare
OKGIIK_12025 +0.7 1.2 DUF4381 domain-containing protein compare
OKGIIK_11010 +0.7 1.6 Type II secretion system protein N compare
OKGIIK_08030 lon +0.7 5.3 endopeptidase La compare
OKGIIK_02520 +0.7 1.1 hypothetical protein compare
OKGIIK_13720 +0.7 2.5 hypothetical protein compare
OKGIIK_01520 thrA +0.7 1.6 homoserine dehydrogenase compare
OKGIIK_12495 +0.7 1.5 FadR family transcriptional regulator compare
OKGIIK_14575 yciW +0.7 1.6 carboxymuconolactone decarboxylase compare
OKGIIK_15165 +0.7 0.8 hypothetical protein compare
OKGIIK_16435 +0.7 4.4 Protein-disulfide isomerase compare
OKGIIK_15305 rbsK +0.7 1.3 ribokinase compare
OKGIIK_05905 ibpA +0.7 1.4 heat-shock protein Hsp20 compare
OKGIIK_11235 pssA +0.7 1.2 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
OKGIIK_16755 +0.7 0.9 Thioesterase compare
OKGIIK_15330 +0.7 2.0 DUF484 domain-containing protein compare
OKGIIK_10670 +0.7 2.1 hypothetical protein compare
OKGIIK_05240 +0.7 1.9 IS1595 family transposase compare
OKGIIK_14795 +0.6 1.7 Conjugal transfer protein TraR compare
OKGIIK_00095 ybeD +0.6 1.0 DUF493 domain-containing protein compare
OKGIIK_07870 rnc +0.6 1.0 ribonuclease III compare
OKGIIK_15285 mnmE +0.6 2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
OKGIIK_07490 +0.6 2.1 VOC family protein compare
OKGIIK_00510 +0.6 1.7 hypothetical protein compare
OKGIIK_12195 cydX +0.6 0.8 cytochrome bd-I oxidase subunit CydX compare
OKGIIK_01585 yceI +0.6 2.7 polyisoprenoid-binding protein compare
OKGIIK_00865 +0.6 1.9 Sensor protein QseC compare
OKGIIK_13640 +0.6 1.6 Competence protein ComF compare
OKGIIK_08725 +0.6 2.4 PBSX family phage terminase large subunit compare
OKGIIK_13860 dtd +0.6 1.8 D-aminoacyl-tRNA deacylase compare
OKGIIK_03155 +0.6 2.3 Copper ABC transporter ATP-binding protein compare
OKGIIK_12850 +0.6 1.2 hypothetical protein compare
OKGIIK_13335 ubiK +0.6 1.1 Ubiquinone biosynthesis accessory factor UbiK compare
OKGIIK_04565 +0.6 0.8 hypothetical protein compare
OKGIIK_08400 +0.6 1.8 GYD family protein compare
OKGIIK_00840 +0.6 3.1 hypothetical protein compare
OKGIIK_10655 ansA +0.6 2.1 asparaginase compare
OKGIIK_00795 ycgM +0.6 2.4 2-keto-4-pentenoate hydratase compare
OKGIIK_13500 +0.6 2.9 hypothetical protein compare
OKGIIK_15475 +0.6 2.7 DUF488 domain-containing protein compare
OKGIIK_04280 +0.6 1.2 hypothetical protein compare
OKGIIK_07040 smc +0.6 0.9 chromosome segregation protein SMC compare
OKGIIK_11035 +0.6 0.9 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
OKGIIK_12165 +0.6 2.7 DUF1631 domain-containing protein compare
OKGIIK_03490 +0.6 2.4 hypothetical protein compare
OKGIIK_00525 +0.6 2.0 PEROXIDASE-4 domain-containing protein compare
OKGIIK_08935 +0.6 1.4 hypothetical protein compare
OKGIIK_09930 +0.5 2.0 GNAT family N-acetyltransferase compare
OKGIIK_02810 flhB +0.5 2.2 flagellar biosynthesis protein FlhB compare
OKGIIK_00985 +0.5 3.4 DnrO protein compare
OKGIIK_06825 +0.5 2.0 hypothetical protein compare
OKGIIK_06630 hfq +0.5 2.3 RNA chaperone Hfq compare
OKGIIK_02325 +0.5 2.0 AI-2E family transporter compare
OKGIIK_08545 +0.5 2.3 Acetoacetyl-CoA reductase compare
OKGIIK_05990 hxlR +0.5 1.7 transcriptional regulator compare
OKGIIK_00170 +0.5 2.1 DUF4433 domain-containing protein compare
OKGIIK_10705 cdd +0.5 1.9 cytidine deaminase compare
OKGIIK_00205 +0.5 2.2 AAA family ATPase compare
OKGIIK_16255 gspM +0.5 2.0 type II secretion system protein GspM compare
OKGIIK_02360 pitA +0.5 0.8 inorganic phosphate transporter compare
OKGIIK_04380 +0.5 2.6 Phosphonoacetate hydrolase compare
OKGIIK_14095 +0.5 2.2 Plasmid maintenance system killer protein compare
OKGIIK_03865 +0.5 0.7 ferredoxin compare
OKGIIK_04625 +0.5 1.7 Methyltransferase compare
OKGIIK_12670 +0.5 1.8 hypothetical protein compare
OKGIIK_07855 +0.5 0.7 Histidine kinase compare
OKGIIK_04995 +0.5 1.6 cupin compare
OKGIIK_01290 gatA +0.5 1.8 amidase compare
OKGIIK_00515 +0.5 3.1 Phage tail protein compare
OKGIIK_08960 +0.5 2.2 Restriction endonuclease subunit S compare
OKGIIK_02090 +0.5 2.1 hypothetical protein compare
OKGIIK_12555 +0.5 2.7 hypothetical protein compare
OKGIIK_09055 rsmC +0.5 2.5 16S rRNA G1207 methylase RsmC compare
OKGIIK_12515 +0.5 2.9 3-oxoacyl-ACP reductase compare
OKGIIK_15130 +0.5 2.2 Patatin compare
OKGIIK_03745 recX +0.5 1.3 recombination regulator RecX compare
OKGIIK_07780 +0.5 1.7 Aldehyde oxidase compare
OKGIIK_09455 +0.5 1.7 GNAT family acetyltransferase compare
OKGIIK_15415 +0.5 2.6 ABC transporter substrate-binding protein compare
OKGIIK_16420 +0.5 1.8 hypothetical protein compare
OKGIIK_09525 yciI +0.5 0.8 YCII domain-containing protein compare
OKGIIK_03510 mmsB +0.5 1.5 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase compare
OKGIIK_16475 +0.5 1.9 Lipopolysaccharide heptosyltransferase family protein compare
OKGIIK_02570 +0.5 2.1 Membrane assembly protein AsmA compare
OKGIIK_11900 trmB +0.5 2.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
OKGIIK_16450 msrC +0.5 2.1 diguanylate cyclase compare
OKGIIK_03785 phoR +0.5 1.0 phosphate regulon sensor histidine kinase PhoR compare
OKGIIK_14860 ssuE +0.5 1.8 ACP phosphodiesterase compare
OKGIIK_05695 +0.5 1.1 Large ribosomal RNA subunit accumulation protein YceD compare
OKGIIK_01410 +0.5 1.5 Histidine kinase compare
OKGIIK_02835 cheY +0.5 0.9 chemotaxis response regulator CheY compare
OKGIIK_10685 rpoE +0.5 2.3 RNA polymerase sigma factor compare
OKGIIK_13060 mutM +0.4 2.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase compare
OKGIIK_16045 +0.4 1.9 Beta-ketoacyl-[acyl-carrier-protein] synthase II compare
OKGIIK_07130 +0.4 1.8 DUF4115 domain-containing protein compare
OKGIIK_01580 +0.4 2.1 GTP-binding protein HSR1 compare
OKGIIK_03505 yhiN +0.4 1.7 NAD(P)/FAD-dependent oxidoreductase compare
OKGIIK_06420 arsC +0.4 1.8 arsenate reductase (glutaredoxin) compare
OKGIIK_00675 +0.4 1.6 hypothetical protein compare
OKGIIK_04435 hflC +0.4 1.9 SPFH domain / Band 7 family compare
OKGIIK_12860 +0.4 1.8 Disulfide bond formation protein DsbA compare
OKGIIK_03140 +0.4 0.8 Sec-independent protein translocase protein TatA compare
OKGIIK_01630 +0.4 2.4 D-amino-acid oxidase compare
OKGIIK_00490 yqgC +0.4 1.7 DUF456 domain-containing protein compare
OKGIIK_09995 yajC +0.4 0.8 preprotein translocase subunit YajC compare
OKGIIK_06995 recJ +0.4 2.3 single-stranded-DNA-specific exonuclease RecJ compare
OKGIIK_11805 ccmA +0.4 2.5 heme ABC exporter ATP-binding protein CcmA compare
OKGIIK_09330 +0.4 1.5 Cupin compare
OKGIIK_02370 atl1 +0.4 0.6 cysteine methyltransferase compare
OKGIIK_01960 +0.4 1.8 DUF2007 domain-containing protein compare
OKGIIK_08830 +0.4 1.3 hypothetical protein compare
OKGIIK_09545 pAS +0.4 2.9 PAS domain compare
OKGIIK_08765 +0.4 1.3 hypothetical protein compare
OKGIIK_08665 +0.4 1.4 hypothetical protein compare
OKGIIK_00940 fabA +0.4 1.3 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
OKGIIK_14960 tolC +0.4 1.7 RND transporter compare
OKGIIK_03775 ppx +0.4 2.0 exopolyphosphatase compare
OKGIIK_03610 fadH +0.4 1.1 oxidoreductase compare
OKGIIK_14555 rssA +0.4 2.2 patatin compare
OKGIIK_14450 +0.4 1.0 DUF488 domain-containing protein compare
OKGIIK_06675 +0.4 2.0 Guanosine polyphosphate pyrophosphohydrolase compare
OKGIIK_04870 +0.4 1.4 Rod shape-determining protein RodA compare
OKGIIK_08870 +0.4 1.3 hypothetical protein compare
OKGIIK_15140 yhcF +0.4 1.9 GntR family transcriptional regulator compare
OKGIIK_15005 yhbQ +0.4 1.7 putative endonuclease, GIY-YIG superfamily compare
OKGIIK_10205 rnhB +0.4 1.8 ribonuclease HII compare
OKGIIK_16795 +0.4 1.7 EamA-like transporter family compare
OKGIIK_08520 +0.4 0.5 MarR family transcriptional regulator compare
OKGIIK_02795 fliP +0.4 1.2 flagellar type III secretion system pore protein FliP compare
OKGIIK_04765 greB +0.4 1.5 transcription elongation factor GreB compare
OKGIIK_13590 leuD +0.4 0.7 3-isopropylmalate dehydratase small subunit compare
OKGIIK_16895 nfnB +0.4 1.6 malonic semialdehyde reductase compare
OKGIIK_01610 +0.4 1.6 Sulfurtransferase compare
OKGIIK_01945 +0.4 2.4 TVP38/TMEM64 family membrane protein compare
OKGIIK_14700 +0.4 1.0 Hexosyltransferase compare
OKGIIK_14915 +0.4 2.1 Porin compare
OKGIIK_00975 +0.4 2.1 efflux RND transporter periplasmic adaptor subunit compare
OKGIIK_09700 +0.4 1.6 Oxidoreductase compare
OKGIIK_13140 +0.4 1.0 DUF2249 domain-containing protein compare
OKGIIK_08550 +0.4 2.5 kynurenine 3-monooxygenase compare
OKGIIK_06245 +0.4 1.2 Mercuric transport protein MerT compare
OKGIIK_16500 +0.4 2.0 Restriction endonuclease compare
OKGIIK_09720 ypfJ +0.4 2.7 neutral zinc metallopeptidase compare
OKGIIK_06100 +0.4 0.8 DUF2282 domain-containing protein compare
OKGIIK_15290 +0.4 2.2 hypothetical protein compare
OKGIIK_11995 +0.4 1.6 efflux RND transporter periplasmic adaptor subunit compare
OKGIIK_14725 +0.4 2.2 Demethylmenaquinone methyltransferase compare
OKGIIK_11830 metF +0.4 2.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
OKGIIK_07695 +0.4 2.2 Cardiolipin synthase B compare
OKGIIK_11525 +0.4 1.7 Transporter compare
OKGIIK_06745 +0.4 2.3 VOC family virulence protein compare
OKGIIK_02725 +0.4 0.6 hypothetical protein compare
OKGIIK_04925 +0.4 2.0 Zinc transporter ZitB compare
OKGIIK_01620 +0.4 2.2 AraC family transcriptional regulator compare
OKGIIK_05980 cysG +0.4 1.3 siroheme synthase CysG compare
OKGIIK_00725 +0.4 1.0 DUF6348 domain-containing protein compare
OKGIIK_05985 cysK +0.4 1.7 cysteine synthase A compare
OKGIIK_00625 dusA +0.4 2.1 tRNA dihydrouridine(20/20a) synthase DusA compare
OKGIIK_00900 +0.4 2.1 FGE-sulfatase domain-containing protein compare
OKGIIK_12445 cytC553 +0.4 1.1 cytochrome C compare
OKGIIK_16455 bioD +0.4 0.7 dethiobiotin synthase compare
OKGIIK_08920 +0.4 0.6 hypothetical protein compare
OKGIIK_05125 +0.4 1.3 Mechanosensitive ion channel protein MscS compare
OKGIIK_02765 fliJ +0.4 0.6 flagellar export protein FliJ compare
OKGIIK_10840 +0.4 1.8 Transposase compare
OKGIIK_03680 yfdV +0.4 1.9 transporter compare
OKGIIK_00875 mgtA +0.3 2.1 cation-translocating P-type ATPase compare
OKGIIK_13360 copY +0.3 0.9 methicillin resistance protein compare
OKGIIK_06070 +0.3 1.6 DNA-binding protein compare
OKGIIK_12915 +0.3 1.8 Peptidase M23 compare
OKGIIK_06765 +0.3 1.8 Membrane protein compare
OKGIIK_00690 rocF +0.3 1.5 arginase compare
OKGIIK_03440 rlmKL +0.3 2.1 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL compare
OKGIIK_00770 +0.3 2.5 Dihydroorotate dehydrogenase compare


Specific Phenotypes

For 2 genes in this experiment

For stress Cadmium chloride in Rhodanobacter sp. FW510-T8

For stress Cadmium chloride across organisms