Experiment set1S12 for Rhodanobacter sp. FW510-T8

Compare to:

no stress control

200 most important genes:

  gene name fitness t score description  
OKGIIK_13570 thrC -3.8 -2.6 threonine synthase compare
OKGIIK_07300 -3.6 -2.4 carbamoyl phosphate synthase small subunit compare
OKGIIK_15735 23S_rrna -3.5 -4.1 23S ribosomal RNA compare
OKGIIK_10175 rseP -3.4 -2.3 RIP metalloprotease RseP compare
OKGIIK_11105 baeS -3.0 -4.1 sensor histidine kinase compare
OKGIIK_01155 cpsB -3.0 -4.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
OKGIIK_02315 purM -2.9 -4.5 phosphoribosylformylglycinamidine cyclo-ligase compare
OKGIIK_12965 -2.8 -7.0 glutamate--cysteine ligase compare
OKGIIK_07375 smpB -2.8 -2.7 SsrA-binding protein SmpB compare
OKGIIK_01165 rfbC -2.6 -5.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
OKGIIK_09995 yajC -2.6 -4.1 preprotein translocase subunit YajC compare
OKGIIK_16565 mgtA -2.5 -7.0 magnesium-translocating P-type ATPase compare
OKGIIK_03310 minC -2.5 -2.9 septum site-determining protein MinC compare
OKGIIK_11415 ldcA -2.5 -4.4 muramoyltetrapeptide carboxypeptidase compare
OKGIIK_01845 kup -2.4 -4.0 potassium uptake protein compare
OKGIIK_00745 aceF -2.4 -2.3 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
OKGIIK_06870 hflD -2.3 -6.0 high frequency lysogenization protein HflD compare
OKGIIK_07125 -2.3 -4.3 Ancillary SecYEG translocon subunit compare
OKGIIK_05570 purF -2.2 -4.5 amidophosphoribosyltransferase compare
OKGIIK_11505 purL -2.2 -4.2 phosphoribosylformylglycinamidine synthase compare
OKGIIK_16805 purH -2.2 -1.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
OKGIIK_03000 degQ -2.2 -9.7 peptidase S1 compare
OKGIIK_07900 rpoE -2.1 -8.0 RNA polymerase sigma factor RpoE compare
OKGIIK_05620 rfaF -2.1 -5.8 ADP-heptose--LPS heptosyltransferase compare
OKGIIK_16060 gpmA -2.1 -4.4 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
OKGIIK_02260 raiA -2.1 -11.1 ribosomal subunit interface protein compare
OKGIIK_07295 carB -2.1 -5.7 carbamoyl-phosphate synthase large subunit compare
OKGIIK_11005 suhB -2.1 -4.8 Archaeal fructose-1,6-bisphosphatase or related enzyme, inositol monophosphatase family compare
OKGIIK_07250 lapB -2.0 -8.0 lipopolysaccharide assembly protein LapB compare
OKGIIK_03430 -2.0 -5.8 N-acetylmuramoyl-L-alanine amidase compare
OKGIIK_11110 ompR -2.0 -9.0 DNA-binding response regulator compare
OKGIIK_01060 gap -2.0 -6.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
OKGIIK_11115 fiu -2.0 -4.5 Outer membrane receptor for monomeric catechols compare
OKGIIK_06585 ompA -1.9 -9.3 flagellar motor protein MotB compare
OKGIIK_14345 nagA -1.9 -8.5 N-acetylglucosamine-6-phosphate deacetylase compare
OKGIIK_12705 pta -1.9 -3.8 NADP-dependent malic enzyme compare
OKGIIK_01195 -1.9 -5.7 ABC transporter, ATP-binding protein compare
OKGIIK_01190 -1.9 -3.1 Transport permease protein compare
OKGIIK_11075 gshB -1.9 -5.3 glutathione synthase compare
OKGIIK_11330 lolD -1.8 -2.3 ABC transporter ATP-binding protein compare
OKGIIK_13855 -1.8 -2.4 Lipid A biosynthesis acyltransferase compare
OKGIIK_06755 rnr -1.8 -13.2 ribonuclease R compare
OKGIIK_07005 asnB -1.8 -8.4 asparagine synthase B compare
OKGIIK_05615 -1.8 -4.7 DUF6165 domain-containing protein compare
OKGIIK_16560 -1.8 -6.7 hypothetical protein compare
OKGIIK_01240 -1.8 -6.2 EamA domain-containing protein compare
OKGIIK_04850 trpA -1.8 -4.5 tryptophan synthase subunit alpha compare
OKGIIK_00755 pdhA -1.8 -3.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
OKGIIK_04805 aroC -1.8 -4.6 chorismate synthase compare
OKGIIK_00990 -1.7 -3.8 TonB-dependent copper receptor compare
OKGIIK_09430 argH -1.7 -6.3 argininosuccinate lyase compare
OKGIIK_03600 cspC -1.7 -2.3 cold-shock protein compare
OKGIIK_11965 mscL -1.7 -1.5 large-conductance mechanosensitive channel protein MscL compare
OKGIIK_04800 rimL -1.7 -2.1 N-acetyltransferase compare
OKGIIK_06640 hflK -1.7 -6.4 FtsH protease activity modulator HflK compare
OKGIIK_01790 rluD -1.7 -5.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
OKGIIK_09515 gph -1.7 -4.6 phosphoglycolate phosphatase compare
OKGIIK_00795 ycgM -1.7 -6.2 2-keto-4-pentenoate hydratase compare
OKGIIK_06580 prpD -1.7 -5.5 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
OKGIIK_09230 -1.6 -2.8 RecBCD enzyme subunit RecB compare
OKGIIK_01780 -1.6 -5.4 NAD+ synthase compare
OKGIIK_01095 tkt -1.6 -6.5 transketolase compare
OKGIIK_05630 elaC -1.6 -3.4 Ribonuclease BN, tRNA processing enzyme compare
OKGIIK_06920 aroA -1.6 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
OKGIIK_11445 ettA -1.6 -7.0 energy-dependent translational throttle protein EttA compare
OKGIIK_01110 pgk -1.6 -5.4 phosphoglycerate kinase compare
OKGIIK_08010 -1.6 -8.6 Peptidylprolyl isomerase compare
OKGIIK_16915 rfaB -1.6 -10.6 glycosyl transferase compare
OKGIIK_15695 -1.6 -7.0 MFS transporter compare
OKGIIK_07040 smc -1.5 -2.7 chromosome segregation protein SMC compare
OKGIIK_07245 -1.5 -5.8 Glycosyl transferase family 4 compare
OKGIIK_04845 trpB -1.5 -7.6 tryptophan synthase subunit beta compare
OKGIIK_07140 rlmN -1.5 -2.4 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
OKGIIK_11495 -1.5 -6.1 Glycosyl transferase family 2 compare
OKGIIK_03230 -1.5 -3.1 hypothetical protein compare
OKGIIK_07255 -1.4 -3.6 LapA-dom domain-containing protein compare
OKGIIK_03890 panC -1.4 -2.7 pantoate--beta-alanine ligase compare
OKGIIK_14160 -1.4 -4.6 ABC transporter ATP-binding protein compare
OKGIIK_03555 metP -1.4 -5.9 metal ABC transporter permease compare
OKGIIK_16630 -1.4 -6.3 hypothetical protein compare
OKGIIK_15045 -1.4 -3.9 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
OKGIIK_09975 -1.4 -7.3 Aminoglycoside phosphotransferase compare
OKGIIK_12075 -1.4 -2.6 citrate synthase compare
OKGIIK_04915 -1.4 -3.1 Ferric uptake regulation protein compare
OKGIIK_12595 aceF -1.3 -4.2 dihydrolipoyllysine-residue acetyltransferase compare
OKGIIK_05210 -1.3 -2.4 HigA family addiction module antitoxin compare
OKGIIK_07680 -1.3 -2.0 ATPase P compare
OKGIIK_07430 secG -1.3 -5.1 preprotein translocase subunit SecG compare
OKGIIK_09225 -1.3 -3.0 RecBCD enzyme subunit RecC compare
OKGIIK_02875 -1.3 -3.2 Flg-hook domain-containing protein compare
OKGIIK_13745 -1.3 -10.2 Type III secretion system lipoprotein chaperone (YscW) compare
OKGIIK_01080 fba1 -1.3 -8.0 fructose-bisphosphate aldolase class I compare
OKGIIK_01450 -1.3 -2.3 transcriptional regulator compare
OKGIIK_09780 -1.3 -3.4 Osmotically inducible protein OsmC compare
OKGIIK_14175 -1.3 -9.0 Sensor protein QseC compare
OKGIIK_07870 rnc -1.2 -2.5 ribonuclease III compare
OKGIIK_16440 -1.2 -3.4 Cytochrome C compare
OKGIIK_08880 -1.2 -1.5 hypothetical protein compare
OKGIIK_09020 adhE -1.2 -3.5 aldehyde dehydrogenase family protein compare
OKGIIK_11030 -1.2 -8.0 P63C domain-containing protein compare
OKGIIK_14085 mtnX -1.1 -6.4 phosphatase compare
OKGIIK_15520 pgi -1.1 -4.6 glucose-6-phosphate isomerase compare
OKGIIK_14165 lolE -1.1 -8.2 ABC transporter permease compare
OKGIIK_01310 gcvH -1.1 -2.7 glycine cleavage system protein GcvH compare
OKGIIK_12885 -1.1 -2.3 hypothetical protein compare
OKGIIK_01215 -1.1 -6.3 GDP-mannose 4,6 dehydratase compare
OKGIIK_07895 -1.1 -3.0 Anti-anti-sigma factor compare
OKGIIK_08915 -1.1 -1.2 hypothetical protein compare
OKGIIK_08705 -1.1 -2.1 hypothetical protein compare
OKGIIK_00470 -1.1 -2.6 Alanyl-tRNA synthetase compare
OKGIIK_14180 -1.1 -3.5 DNA-binding response regulator compare
OKGIIK_09325 -1.1 -1.9 Enoyl-CoA hydratase compare
OKGIIK_02255 hprK -1.1 -5.7 HPr(Ser) kinase/phosphatase compare
OKGIIK_14170 -1.1 -7.8 TolC family protein compare
OKGIIK_13565 thrB -1.1 -2.8 homoserine kinase compare
OKGIIK_06645 hflC -1.1 -5.1 protease modulator HflC compare
OKGIIK_16330 folK -1.1 -1.7 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase compare
OKGIIK_02250 rapZ -1.1 -6.2 RNase adapter RapZ compare
OKGIIK_00415 -1.0 -2.2 hypothetical protein compare
OKGIIK_03030 -1.0 -2.2 DUF3301 domain-containing protein compare
OKGIIK_14090 argD -1.0 -7.1 aspartate aminotransferase family protein compare
OKGIIK_06470 typA -1.0 -1.5 translational GTPase TypA compare
OKGIIK_09370 fabG -1.0 -2.6 3-hydroxyacyl-CoA dehydrogenase compare
OKGIIK_12700 aceE -1.0 -7.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
OKGIIK_13255 -1.0 -3.2 tRNA (cytidine(34)-2'-O)-methyltransferase compare
OKGIIK_03795 -1.0 -7.5 Putative beta-barrel assembly-enhancing protease compare
OKGIIK_01830 tACO1 -1.0 -1.5 YebC/PmpR family DNA-binding transcriptional regulator compare
OKGIIK_13560 thrA -1.0 -4.2 homoserine dehydrogenase compare
OKGIIK_01160 rfbD -1.0 -3.5 dTDP-4-dehydrorhamnose reductase compare
OKGIIK_09340 -1.0 -6.4 hydroxymethylglutaryl-CoA lyase compare
OKGIIK_15705 -1.0 -3.6 anhydro-N-acetylmuramic acid kinase compare
OKGIIK_06740 gcvP2 -1.0 -5.6 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain compare
OKGIIK_02935 -1.0 -2.2 hypothetical protein compare
OKGIIK_04970 hisA -1.0 -4.3 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)me thylideneamino]imidazole-4-carboxamide isomerase compare
OKGIIK_01235 -1.0 -7.0 Glycosyl transferases group 1 compare
OKGIIK_08100 -1.0 -4.4 Peptidase M23 compare
OKGIIK_11440 glyA -1.0 -5.7 serine hydroxymethyltransferase compare
OKGIIK_01175 rfbB -0.9 -5.9 dTDP-glucose 4,6-dehydratase compare
OKGIIK_08115 surE -0.9 -3.9 5'/3'-nucleotidase SurE compare
OKGIIK_10960 -0.9 -1.6 ABC transporter compare
OKGIIK_14150 -0.9 -6.7 Alpha/beta hydrolase compare
OKGIIK_04920 -0.9 -3.1 MerC mercury resistance protein compare
OKGIIK_12590 lpdA -0.9 -2.6 dihydrolipoyl dehydrogenase compare
OKGIIK_11870 rimK -0.9 -4.0 30S ribosomal protein S6--L-glutamate ligase compare
OKGIIK_10125 glnD -0.9 -1.6 [protein-PII] uridylyltransferase compare
OKGIIK_13030 rpmG -0.9 -3.5 50S ribosomal protein L33 compare
OKGIIK_14110 fabB -0.9 -4.2 3-oxoacyl-(acyl-carrier-protein) synthase compare
OKGIIK_01170 rfbA -0.9 -4.7 glucose-1-phosphate thymidylyltransferase RfbA compare
OKGIIK_04975 hisF -0.9 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
OKGIIK_14030 mnhE -0.9 -1.1 Na+/H+ antiporter subunit E compare
OKGIIK_13750 purD -0.9 -2.0 phosphoribosylamine--glycine ligase compare
OKGIIK_15305 rbsK -0.8 -1.3 ribokinase compare
OKGIIK_12065 -0.8 -6.9 Penicillin-binding protein 1A compare
OKGIIK_11740 -0.8 -5.5 LppC putative lipoprotein compare
OKGIIK_05880 phaC -0.8 -5.9 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
OKGIIK_08635 -0.8 -1.6 hypothetical protein compare
OKGIIK_07510 rnk -0.8 -2.1 nucleoside diphosphate kinase regulator compare
OKGIIK_16840 -0.8 -3.9 Redoxin compare
OKGIIK_00530 -0.8 -2.5 hypothetical protein compare
OKGIIK_06555 ahpC -0.8 -2.6 alkyl hydroperoxide reductase subunit C compare
OKGIIK_10080 ihfA -0.8 -1.3 integration host factor subunit alpha compare
OKGIIK_09875 glpG -0.8 -6.0 DUF1751 domain-containing protein compare
OKGIIK_16685 natB -0.8 -4.1 ABC transporter permease compare
OKGIIK_08920 -0.8 -1.9 hypothetical protein compare
OKGIIK_14940 -0.8 -2.9 undecaprenyl-diphosphate phosphatase compare
OKGIIK_01135 ydcH -0.8 -2.2 DUF465 domain-containing protein compare
OKGIIK_02295 -0.8 -2.4 BolA family transcriptional regulator compare
OKGIIK_06140 merD -0.7 -2.4 mercuric resistance transcriptional repressor protein MerD compare
OKGIIK_07670 ccoP -0.7 -2.1 cytochrome-c oxidase, cbb3-type subunit III compare
OKGIIK_12280 trpC -0.7 -2.8 indole-3-glycerol phosphate synthase TrpC compare
OKGIIK_16625 -0.7 -5.3 Ferredoxin--NADP(+) reductase compare
OKGIIK_02115 ttdA -0.7 -3.3 fumarate hydratase compare
OKGIIK_01305 gcvT -0.7 -2.1 glycine cleavage system aminomethyltransferase GcvT compare
OKGIIK_16835 aroQ -0.7 -2.7 type II 3-dehydroquinate dehydratase compare
OKGIIK_01125 -0.7 -2.7 DUF4398 domain-containing protein compare
OKGIIK_12130 mlaE -0.7 -2.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
OKGIIK_04410 -0.7 -2.1 hypothetical protein compare
OKGIIK_09445 -0.7 -2.2 acetylornithine deacetylase compare
OKGIIK_03560 abcC -0.7 -2.2 methionine ABC transporter ATP-binding protein compare
OKGIIK_08775 -0.7 -1.5 hypothetical protein compare
OKGIIK_09135 caiA -0.7 -4.4 acyl-CoA dehydrogenase compare
OKGIIK_13810 -0.7 -3.1 glycosyl transferase family 2 compare
OKGIIK_02360 pitA -0.7 -1.8 inorganic phosphate transporter compare
OKGIIK_15125 fbp -0.7 -5.3 class 1 fructose-bisphosphatase compare
OKGIIK_06565 prpB -0.7 -2.5 methylisocitrate lyase compare
OKGIIK_11390 pgpA -0.7 -2.1 Phosphatidylglycerophosphatase A compare
OKGIIK_07395 -0.7 -0.7 NfuA family Fe-S biogenesis protein compare
OKGIIK_10600 -0.7 -4.3 Beta-barrel assembly-enhancing protease compare
OKGIIK_06090 -0.7 -2.6 hypothetical protein compare
OKGIIK_11420 ribB -0.7 -2.8 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II compare
OKGIIK_02765 fliJ -0.7 -1.7 flagellar export protein FliJ compare
OKGIIK_01270 -0.7 -2.1 Transcriptional regulator compare
OKGIIK_07970 ppsA -0.7 -5.1 phosphoenolpyruvate synthase compare
OKGIIK_00465 -0.6 -1.0 Energy transducer TonB compare
OKGIIK_14850 -0.6 -2.2 3-beta hydroxysteroid dehydrogenase compare
OKGIIK_13840 tagB -0.6 -4.1 CDP-glycerol glycerophosphotransferase compare
OKGIIK_16950 tolC -0.6 -4.9 Outer membrane protein TolC compare
OKGIIK_01490 -0.6 -2.7 hypothetical protein compare
OKGIIK_01210 gmd -0.6 -4.6 GDP-mannose 4,6-dehydratase compare
OKGIIK_16680 natA -0.6 -2.1 ABC transporter compare


Specific Phenotypes

None in this experiment

For Rhodanobacter sp. FW510-T8 in no stress control experiments