Experiment set1S112 for Escherichia coli ECOR27

Compare to:

Bas69

Group: phage
Media: LB_plus_SM_buffer + MOI 10
Culturing: Ecoli_ECOR27_ML1, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: Lucas on 11/14/2024
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride, 100 mM Sodium Chloride, 4 mM Magnesium sulfate, 0.005 vol% Gelatin, 25 mM Tris hydrochloride

Specific Phenotypes

For 8 genes in this experiment

For phage MOI 10 in Escherichia coli ECOR27

For phage MOI 10 across organisms

SEED Subsystems

Subsystem #Specific
Lipid A-Ara4N pathway ( Polymyxin resistance ) 1
Oxidative stress 1
Ribosomal protein S12p Asp methylthiotransferase 1
Teichuronic acid biosynthesis 1
Transport of Zinc 1
tRNA processing 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
UDP-α-D-glucuronate biosynthesis (from UDP-glucose) 1 1 1
UDP-N-acetyl-α-D-mannosaminouronate biosynthesis 1 1 1
UDP-α-D-xylose biosynthesis 2 1 1
superpathway of enterobacterial common antigen biosynthesis 10 9 4
enterobacterial common antigen biosynthesis 5 4 2
dTDP-N-acetylthomosamine biosynthesis 4 4 1
superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis 6 4 1
UDP-sugars interconversion 9 2 1
teichuronic acid biosynthesis (B. subtilis 168) 9 2 1
colanic acid building blocks biosynthesis 11 11 1
superpathway of dTDP-glucose-derived O-antigen building blocks biosynthesis 19 5 1
superpathway of UDP-N-acetylglucosamine-derived O-antigen building blocks biosynthesis 24 7 1