Experiment set1IT095 for Escherichia coli BW25113

Compare to:

Putrescine Dihydrochloride nitrogen source

Genes with specific phenotypes:

  gene name fitness t score description  
b1301 puuB -5.5 -7.5 gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding (NCBI) conserved
b1300 puuC -5.3 -6.3 gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent (NCBI) conserved
b1299 puuR -5.2 -6.1 DNA-binding transcriptional repressor (NCBI) compare
b0674 asnB -4.8 -12.7 asparagine synthetase B (NCBI) compare
b1297 b1297 -4.6 -10.7 putative glutamine synthetase (EC 6.3.1.2) (VIMSS) conserved
b1296 ycjJ -4.1 -6.2 putative amino acid/amine transport protein (VIMSS) conserved
b3869 glnL -3.3 -9.3 sensory histidine kinase in two-component regulatory system with GlnG (NCBI) compare
b3423 glpR -3.0 -12.4 DNA-binding transcriptional repressor (NCBI) compare
b3166 truB -2.8 -9.7 tRNA pseudouridine synthase B (NCBI) compare
b0848 ybjM -2.7 -8.1 predicted inner membrane protein (NCBI) compare
b3780 rhlB -2.6 -14.2 ATP-dependent RNA helicase (NCBI) compare
b4390 nadR -2.6 -12.2 probable nadAB transcriptional regulator (VIMSS) compare
b3670 ilvN -2.4 -7.2 acetolactate synthase small subunit (NCBI) compare
b2517 yfgB -2.4 -9.0 predicted enzyme (NCBI) compare
b3292 zntR -2.1 -6.4 zinc-responsive transcriptional regulator (NCBI) compare
b3432 glgB -2.0 -13.6 glycogen branching enzyme (NCBI) compare
b0451 amtB -2.0 -7.1 ammonium transporter (NCBI) conserved
b3252 yhdA -2.0 -12.2 conserved inner membrane protein (NCBI) compare
b0213 yafS -1.6 -5.4 orf, hypothetical protein (VIMSS) compare
b2326 yfcM -1.6 -5.5 hypothetical protein (NCBI) compare
b1983 yeeN -1.6 -9.7 hypothetical protein (NCBI) compare
b3527 yhjJ -1.5 -11.7 predicted zinc-dependent peptidase (NCBI) compare
b3073 ygjG -1.4 -7.6 putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent (RefSeq) conserved
b1864 yebC -1.4 -6.7 hypothetical protein (NCBI) compare
b2916 argP -1.3 -6.1 chromosome replication initiation inhibitor protein (NCBI) compare
b1162 ycgE -1.2 -5.4 predicted DNA-binding transcriptional regulator (NCBI) compare
b4054 tyrB -1.2 -7.5 tyrosine aminotransferase, tyrosine-repressible, PLP-dependent (NCBI) compare
b2812 ygdL -1.1 -5.4 hypothetical protein (NCBI) compare
b0563 tfaX -1.1 -6.4 DLP12 prophage; predicted protein (RefSeq) compare
b3712 yieE -1.0 -6.6 predicted phosphopantetheinyl transferase (RefSeq) compare
b4235 pmbA +1.0 8.3 predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) compare
b3507 dctR +1.0 9.5 protein involved in metabolism of C4-dicarboxylates (Katherine Huang) compare
b4022 yjbC +1.0 7.6 23S rRNA pseudouridine synthase (NCBI) compare
b4024 lysC +1.3 10.0 aspartate kinase III (NCBI) compare
b4391 yjjK +1.3 10.3 fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) compare
b3075 ebgR +1.4 9.4 DNA-binding transcriptional repressor (NCBI) compare
b1896 otsA +1.5 12.8 trehalose-6-phosphate synthase (NCBI) compare
b3494 yhiO +1.8 12.3 universal stress protein UspB (NCBI) compare
b0382 yaiB +2.8 23.1 hypothetical protein (NCBI) compare
b3397 nudE +2.9 25.3 ADP-ribose diphosphatase (NCBI) compare
b4218 ytfL +4.1 36.1 predicted inner membrane protein (NCBI) compare
b2181 yejG +4.6 33.6 hypothetical protein (NCBI) compare


Specific phenotypes for nitrogen source Putrescine Dihydrochloride across organisms