Experiment set1IT095 for Escherichia coli BW25113

Compare to:

Putrescine Dihydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
b2476 purC -7.1 -4.9 phosphoribosylaminoimidazole-succinocarboxamidesynthase (NCBI) compare
b0912 ihfB -6.5 -4.5 integration host factor subunit beta (NCBI) compare
b1260 trpA -5.8 -6.9 tryptophan synthase subunit alpha (NCBI) compare
b1301 puuB -5.5 -7.5 gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding (NCBI) conserved
b1300 puuC -5.3 -6.3 gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent (NCBI) conserved
b2320 pdxB -5.2 -9.4 erythronate-4-phosphate dehydrogenase (NCBI) compare
b2023 hisH -5.2 -7.2 imidazole glycerol phosphate synthase subunit HisH (NCBI) compare
b2022 hisB -5.2 -8.7 imidazoleglycerolphosphate dehydratase and histidinol-phosphate phosphatase (VIMSS) compare
b0523 purE -5.2 -5.0 phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) compare
b0243 proA -5.2 -11.0 gamma-glutamyl phosphate reductase (NCBI) compare
b1299 puuR -5.2 -6.1 DNA-binding transcriptional repressor (NCBI) compare
b2024 hisA -5.1 -3.1 N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'- phosphoribosyl)-4-imidazolecarboxamide isomerase (VIMSS) compare
b2021 hisC -5.1 -6.9 histidinol-phosphate aminotransferase (NCBI) compare
b0049 apaH -5.1 -6.0 diadenosinetetraphosphatase (NCBI) compare
b3772 ilvA -5.0 -12.8 threonine dehydratase (NCBI) compare
b3389 aroB -5.0 -13.6 3-dehydroquinate synthase (NCBI) compare
b0522 purK -5.0 -8.9 phosphoribosylaminoimidazole carboxylase (NCBI) compare
b2025 hisF -4.9 -6.7 imidazole glycerol phosphate synthase subunit HisF (NCBI) compare
b3941 metF -4.9 -12.6 5,10-methylenetetrahydrofolate reductase (NCBI) compare
b0386 proC -4.8 -7.4 pyrroline-5-carboxylate reductase (NCBI) compare
b3236 mdh -4.8 -8.6 malate dehydrogenase (NCBI) compare
b3958 argC -4.8 -15.0 N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) compare
b2020 hisD -4.8 -10.6 histidinol dehydrogenase (NCBI) compare
b3771 ilvD -4.8 -13.7 dihydroxy-acid dehydratase (NCBI) compare
b0674 asnB -4.8 -12.7 asparagine synthetase B (NCBI) compare
b3008 metC -4.8 -11.9 cystathionine beta-lyase (NCBI) compare
b2026 hisI -4.8 -10.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein (NCBI) compare
b3828 metR -4.7 -11.8 DNA-binding transcriptional activator, homocysteine-binding (NCBI) compare
b2750 cysC -4.7 -7.9 adenylylsulfate kinase (NCBI) compare
b3774 ilvC -4.7 -16.1 ketol-acid reductoisomerase (NCBI) compare
b3868 glnG -4.7 -5.6 fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) compare
b0071 leuD -4.7 -9.0 isopropylmalate isomerase small subunit (NCBI) compare
b3642 pyrE -4.7 -4.5 orotate phosphoribosyltransferase (NCBI) compare
b3212 gltB -4.7 -20.9 glutamate synthase, large subunit (NCBI) compare
b0073 leuB -4.7 -11.3 3-isopropylmalate dehydrogenase (VIMSS) compare
b4245 pyrB -4.7 -12.7 aspartate carbamoyltransferase catalytic subunit (NCBI) compare
b1693 aroD -4.7 -9.4 3-dehydroquinate dehydratase (NCBI) compare
b2312 purF -4.7 -8.9 amidophosphoribosyltransferase (NCBI) compare
b2600 tyrA -4.6 -8.8 fused chorismate mutase T/prephenate dehydrogenase (NCBI) compare
b1290 sapF -4.6 -3.2 predicted antimicrobial peptide transporter subunit (NCBI) compare
b1062 pyrC -4.6 -9.8 dihydroorotase (NCBI) compare
b1297 b1297 -4.6 -10.7 putative glutamine synthetase (EC 6.3.1.2) (VIMSS) conserved
b2501 ppk -4.6 -12.5 polyphosphate kinase (NCBI) compare
b0002 thrA -4.6 -16.4 bifunctional aspartokinase I/homeserine dehydrogenase I (NCBI) compare
b0145 dksA -4.6 -3.1 DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) compare
b1084 rne -4.6 -5.4 fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) compare
b3939 metB -4.6 -12.5 cystathionine gamma-synthase (NCBI) compare
b4006 purH -4.5 -13.9 bifunctionalphosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (NCBI) compare
b3957 argE -4.5 -16.0 acetylornithine deacetylase (NCBI) compare
b2019 hisG -4.5 -7.5 ATP phosphoribosyltransferase (NCBI) compare
b0003 thrB -4.5 -11.6 homoserine kinase (NCBI) compare
b0032 carA -4.5 -9.1 carbamoyl-phosphate synthase small subunit (NCBI) compare
b2557 purL -4.5 -11.2 phosphoribosylformylglycinamidine synthase (NCBI) compare
b0033 carB -4.5 -16.3 carbamoyl-phosphate synthase large subunit (NCBI) compare
b0945 pyrD -4.5 -13.5 dihydroorotate dehydrogenase (NCBI) compare
b2499 purM -4.5 -6.1 phosphoribosylaminoimidazole synthetase (NCBI) compare
b4005 purD -4.4 -9.9 phosphoribosylamine--glycine ligase (NCBI) compare
b2784 relA -4.4 -12.5 (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) compare
b4242 mgtA -4.4 -20.9 magnesium transporter (NCBI) compare
b0242 proB -4.4 -7.9 gamma-glutamyl kinase (NCBI) compare
b3172 argG -4.4 -12.4 argininosuccinate synthase (NCBI) compare
b0004 thrC -4.4 -10.2 threonine synthase (NCBI) compare
b3281 aroE -4.4 -18.4 dehydroshikimate reductase, NAD(P)-binding (NCBI) compare
b1261 trpB -4.3 -3.9 tryptophan synthase subunit beta (NCBI) compare
b0437 clpP -4.3 -10.7 ATP-dependent Clp protease proteolytic subunit (NCBI) compare
b0720 gltA -4.3 -7.2 citrate synthase (NCBI) compare
b0072 leuC -4.3 -14.0 isopropylmalate isomerase large subunit (NCBI) compare
b0052 pdxA -4.3 -11.1 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI) compare
b2762 cysH -4.3 -9.1 phosphoadenosine phosphosulfate reductase (NCBI) compare
b4702 mgtL -4.3 -4.2 regulatory leader peptide for mgtA (NCBI) compare
b3960 argH -4.3 -13.6 argininosuccinate lyase (NCBI) compare
b2764 cysJ -4.2 -11.3 sulfite reductase, alpha subunit, flavoprotein (NCBI) compare
b2414 cysK -4.2 -13.7 cysteine synthase A, O-acetylserine sulfhydrolase A subunit (NCBI) compare
b3082 ygjM -4.2 -4.1 predicted DNA-binding transcriptional regulator (NCBI) compare
b3764 yifE -4.2 -7.5 hypothetical protein (NCBI) compare
b3829 metE -4.2 -17.2 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (NCBI) compare
b2329 aroC -4.2 -6.9 chorismate synthase (NCBI) compare
b4480 hdfR -4.2 -7.9 transcriptional regulator HdfR (NCBI) compare
b0908 aroA -4.2 -11.9 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) compare
b4214 cysQ -4.1 -14.9 PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) compare
b2340 sixA -4.1 -6.8 phosphohistidine phosphatase (NCBI) compare
b1263 trpD -4.1 -4.8 bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) compare
b0889 lrp -4.1 -4.6 DNA-binding transcriptional dual regulator, leucine-binding (NCBI) compare
b1296 ycjJ -4.1 -6.2 putative amino acid/amine transport protein (VIMSS) conserved
b2913 serA -4.0 -10.6 D-3-phosphoglycerate dehydrogenase (NCBI) compare
b1192 ldcA -4.0 -6.6 L,D-carboxypeptidase A (NCBI) compare
b3341 rpsG -4.0 -2.7 30S ribosomal protein S7 (NCBI) compare
b3959 argB -4.0 -13.1 acetylglutamate kinase (RefSeq) compare
b4171 miaA -3.9 -7.1 tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) compare
b4388 serB -3.9 -8.0 3-phosphoserine phosphatase (NCBI) compare
b1130 phoP -3.9 -8.3 DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) compare
b0907 serC -3.9 -9.4 phosphoserine aminotransferase (NCBI) compare
b3368 cysG -3.9 -18.3 fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase (NCBI) compare
b1281 pyrF -3.9 -5.3 orotidine 5'-phosphate decarboxylase (NCBI) compare
b3706 trmE -3.9 -7.4 tRNA modification GTPase (NCBI) compare
b2818 argA -3.9 -11.1 N-acetylglutamate synthase (NCBI) compare
b3844 fre -3.9 -6.9 NAD(P)H-flavin reductase (NCBI) compare
b2500 purN -3.8 -7.3 phosphoribosylglycinamide formyltransferase (NCBI) compare
b3962 udhA -3.8 -10.2 putative oxidoreductase (VIMSS) compare
b2838 lysA -3.8 -12.0 diaminopimelate decarboxylase, PLP-binding (NCBI) compare
b1298 ycjL -3.8 -3.8 probable amidotransferase subunit (VIMSS) conserved
b1712 ihfA -3.8 -5.2 integration host factor subunit alpha (NCBI) compare
b2839 lysR -3.8 -6.2 DNA-binding transcriptional dual regulator (NCBI) compare
b3770 ilvE -3.8 -14.5 branched-chain amino acid aminotransferase (NCBI) compare
b2752 cysD -3.7 -6.0 sulfate adenylyltransferase subunit 2 (NCBI) compare
b1291 sapD -3.7 -3.5 predicted antimicrobial peptide transporter subunit (NCBI) compare
b0438 clpX -3.6 -9.8 ATP-dependent protease ATP-binding subunit (NCBI) compare
b2763 cysI -3.6 -10.5 sulfite reductase, beta subunit, NAD(P)-binding, heme-binding (NCBI) compare
b3181 greA -3.6 -7.5 transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) compare
b0074 leuA -3.5 -12.6 2-isopropylmalate synthase (NCBI) compare
b1129 phoQ -3.5 -9.8 sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) compare
b3204 ptsN -3.5 -7.4 sugar-specific enzyme IIA component of PTS (NCBI) compare
b0658 ybeX -3.5 -11.6 predicteed ion transport (NCBI) compare
b3849 trkH -3.5 -13.6 potassium transporter (NCBI) compare
b3728 pstS -3.5 -4.1 phosphate transporter subunit (NCBI) compare
b2599 pheA -3.5 -8.2 fused chorismate mutase P/prephenate dehydratase (NCBI) compare
b3741 gidA -3.5 -6.6 glucose-inhibited division protein A (NCBI) compare
b0439 lon -3.4 -6.5 DNA-binding ATP-dependent protease La (NCBI) compare
b3213 gltD -3.3 -12.6 glutamate synthase, 4Fe-4S protein, small subunit (NCBI) compare
b3869 glnL -3.3 -9.3 sensory histidine kinase in two-component regulatory system with GlnG (NCBI) compare
b4179 vacB -3.3 -11.1 putative enzyme (VIMSS) compare
b0051 ksgA -3.3 -7.2 dimethyladenosine transferase (NCBI) compare
b0014 dnaK -3.2 -3.1 molecular chaperone DnaK (NCBI) compare
b0423 thiI -3.2 -8.3 thiamine biosynthesis protein ThiI (NCBI) compare
b3671 ilvB -3.2 -16.3 acetolactate synthase large subunit (NCBI) compare
b0430 cyoC -3.2 -6.3 cytochrome o ubiquinol oxidase subunit III (NCBI) compare
b3619 rfaD -3.2 -3.7 ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) compare
b3916 pfkA -3.2 -3.7 6-phosphofructokinase (NCBI) compare
b3210 arcB -3.2 -10.5 hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) compare
b3261 fis -3.1 -3.7 DNA-binding protein Fis (NCBI) compare
b0739 tolA -3.1 -5.1 cell envelope integrity inner membrane protein TolA (NCBI) compare
b2564 pdxJ -3.1 -5.8 pyridoxal phosphate biosynthetic protein (NCBI) compare
b3398 yrfF -3.1 -5.0 predicted inner membrane protein (NCBI) compare
b3429 glgA -3.0 -13.9 glycogen synthase (NCBI) compare
b1235 rssB -3.0 -10.4 response regulator of RpoS (NCBI) compare
b3423 glpR -3.0 -12.4 DNA-binding transcriptional repressor (NCBI) compare
b2751 cysN -3.0 -7.4 sulfate adenylyltransferase subunit 1 (NCBI) compare
b2479 gcvR -3.0 -6.5 transcriptional regulation of gcv operon (VIMSS) compare
b0683 fur -3.0 -2.0 ferric uptake regulator (NCBI) compare
b3781 trxA -2.9 -5.2 thioredoxin 1 (VIMSS) compare
b0928 aspC -2.9 -7.9 aspartate aminotransferase, PLP-dependent (NCBI) compare
b2518 ndk -2.9 -3.9 nucleoside diphosphate kinase (NCBI) compare
b3726 pstA -2.9 -8.0 phosphate transporter subunit (NCBI) compare
b0118 acnB -2.9 -2.8 aconitate hydratase (NCBI) compare
b0088 murD -2.8 -3.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) compare
b3166 truB -2.8 -9.7 tRNA pseudouridine synthase B (NCBI) compare
b3405 ompR -2.8 -6.4 osmolarity response regulator (NCBI) compare
b1865 nudB -2.8 -3.2 dATP pyrophosphohydrolase (NCBI) compare
b2567 rnc -2.8 -1.9 ribonuclease III (NCBI) compare
b3870 glnA -2.8 -1.9 glutamine synthetase (NCBI) compare
b0630 lipB -2.7 -2.6 protein of lipoate biosynthesis (VIMSS) compare
b0848 ybjM -2.7 -8.1 predicted inner membrane protein (NCBI) compare
b3839 tatC -2.7 -10.7 TatABCE protein translocation system subunit (NCBI) compare
b3390 aroK -2.7 -3.6 shikimate kinase I (NCBI) compare
b2188 yejM -2.7 -10.8 predicted hydrolase, inner membrane (NCBI) compare
b1860 ruvB -2.7 -2.5 Holliday junction DNA helicase B (NCBI) compare
b0142 folK -2.7 -1.9 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) compare
b3469 zntA -2.7 -14.5 zinc, cobalt and lead efflux system (NCBI) compare
b2906 visC -2.7 -8.5 hypothetical protein (NCBI) compare
b3725 pstB -2.7 -1.8 phosphate transporter subunit (NCBI) compare
b4146 yjeK -2.6 -4.0 predicted lysine aminomutase (NCBI) compare
b4013 metA -2.6 -6.3 homoserine O-succinyltransferase (NCBI) compare
b3035 tolC -2.6 -11.4 outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) compare
b3792 wzxE -2.6 -11.4 O-antigen translocase (NCBI) compare
b3780 rhlB -2.6 -14.2 ATP-dependent RNA helicase (NCBI) compare
b4375 prfC -2.6 -9.6 peptide chain release factor 3 (NCBI) compare
b4390 nadR -2.6 -12.2 probable nadAB transcriptional regulator (VIMSS) compare
b0738 tolR -2.6 -4.5 membrane spanning protein in TolA-TolQ-TolR complex (NCBI) compare
b3290 trkA -2.6 -3.0 potassium transporter peripheral membrane component (NCBI) compare
b3621 rfaC -2.5 -6.6 ADP-heptose:LPS heptosyl transferase I (NCBI) compare
b0114 aceE -2.5 -3.4 pyruvate dehydrogenase subunit E1 (NCBI) compare
b0431 cyoB -2.5 -12.9 cytochrome o ubiquinol oxidase subunit I (NCBI) compare
b4481 rffT -2.5 -9.6 4-alpha-L-fucosyltransferase (NCBI) compare
b2830 nudH -2.5 -2.9 dinucleoside polyphosphate hydrolase (NCBI) compare
b0750 nadA -2.5 -7.4 quinolinate synthetase (NCBI) compare
b3773 ilvY -2.5 -10.3 DNA-binding transcriptional dual regulator (NCBI) compare
b2894 xerD -2.5 -2.3 site-specific tyrosine recombinase XerD (NCBI) compare
b0890 ftsK -2.4 -8.8 DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) compare
b0113 pdhR -2.4 -5.4 transcriptional regulator of pyruvate dehydrogenase complex (NCBI) compare
b3670 ilvN -2.4 -7.2 acetolactate synthase small subunit (NCBI) compare
b2297 pta -2.4 -3.2 phosphate acetyltransferase (NCBI) compare
b0428 cyoE -2.4 -8.4 protoheme IX farnesyltransferase (NCBI) compare
b4239 treC -2.4 -5.0 trehalose-6-P hydrolase (NCBI) compare
b2517 yfgB -2.4 -9.0 predicted enzyme (NCBI) compare
b4172 hfq -2.4 -2.2 RNA-binding protein Hfq (NCBI) compare
b2017 yefM -2.3 -3.1 orf, hypothetical protein (VIMSS) compare
b0222 lpcA -2.3 -4.3 phosphoheptose isomerase (NCBI) compare
b1109 ndh -2.3 -5.7 respiratory NADH dehydrogenase 2/cupric reductase (NCBI) compare
b0432 cyoA -2.3 -11.6 cytochrome o ubiquinol oxidase subunit II (NCBI) compare
b1273 yciN -2.3 -3.3 hypothetical protein (NCBI) compare
b0200 gmhB -2.3 -2.6 hypothetical protein (NCBI) compare
b2935 tktA -2.2 -3.9 transketolase 1, thiamin-binding (NCBI) compare
b0740 tolB -2.2 -6.5 translocation protein TolB precursor (NCBI) compare
b1262 trpC -2.2 -3.6 N-(5-phosphoribosyl)anthranilate isomerase and indole-3-glycerolphosphate synthetase (VIMSS) compare
b0588 fepC -2.2 -9.7 iron-enterobactin transporter subunit (NCBI) compare
b3386 rpe -2.2 -2.1 ribulose-phosphate 3-epimerase (NCBI) compare
b3911 cpxA -2.2 -12.2 two-component sensor protein (NCBI) compare
b4246 pyrL -2.2 -1.8 pyrBI operon leader peptide (NCBI) compare
b3838 tatB -2.2 -9.5 sec-independent translocase (NCBI) compare
b1292 sapC -2.2 -3.5 predicted antimicrobial peptide transporter subunit (NCBI) compare


Specific Phenotypes

For 42 genes in this experiment

For nitrogen source Putrescine Dihydrochloride in Escherichia coli BW25113

For nitrogen source Putrescine Dihydrochloride across organisms