Experiment set1IT090 for Rhizobium sp. OAE497

Compare to:

Thymidine carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS15855 -6.6 -2.2 cell division protein ZapA compare
ABIE40_RS08330 -6.5 -2.2 hypothetical protein compare
ABIE40_RS19050 -6.5 -4.5 3-isopropylmalate dehydrogenase compare
ABIE40_RS00245 -6.5 -4.5 prephenate dehydratase compare
ABIE40_RS18590 -6.4 -4.4 homoserine O-succinyltransferase compare
ABIE40_RS02340 -6.4 -4.4 O-succinylhomoserine sulfhydrylase compare
ABIE40_RS19355 -6.4 -2.8 thioredoxin compare
ABIE40_RS27665 -6.4 -2.1 hypothetical protein compare
ABIE40_RS30690 -6.3 -2.5 hypothetical protein compare
ABIE40_RS18380 -6.3 -4.4 3-isopropylmalate dehydratase large subunit compare
ABIE40_RS09155 -6.3 -3.2 DUF934 domain-containing protein compare
ABIE40_RS11950 -6.1 -4.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS30865 -6.0 -2.0 CheR family methyltransferase compare
ABIE40_RS27485 -5.8 -2.5 response regulator compare
ABIE40_RS19040 -5.7 -3.9 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS17525 -5.7 -1.9 lipoprotein compare
ABIE40_RS27295 -5.5 -1.8 hypothetical protein compare
ABIE40_RS08640 -5.5 -1.8 hypothetical protein compare
ABIE40_RS13330 -5.3 -10.2 2-isopropylmalate synthase compare
ABIE40_RS18775 -5.3 -11.4 pyruvate carboxylase compare
ABIE40_RS26805 -5.3 -1.8 chaperone modulator CbpM compare
ABIE40_RS09095 -5.2 -2.9 PAS domain-containing sensor histidine kinase compare
ABIE40_RS28920 -5.2 -1.8 response regulator compare
ABIE40_RS30230 -5.2 -1.7 CsbD family protein compare
ABIE40_RS06555 -5.2 -1.7 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS24490 -5.1 -1.0 flavin reductase compare
ABIE40_RS06775 -5.1 -2.4 DUF177 domain-containing protein compare
ABIE40_RS07740 -5.1 -2.0 elongation factor Tu compare
ABIE40_RS27395 -5.0 -1.0 hypothetical protein compare
ABIE40_RS06730 -5.0 -3.0 riboflavin synthase compare
ABIE40_RS09545 -5.0 -1.9 anthranilate phosphoribosyltransferase compare
ABIE40_RS19265 -5.0 -2.1 protein-export chaperone SecB compare
ABIE40_RS17530 -4.9 -3.4 diaminopimelate decarboxylase compare
ABIE40_RS27215 -4.9 -1.0 3'-5' exonuclease compare
ABIE40_RS09150 -4.9 -15.1 nitrite/sulfite reductase compare
ABIE40_RS15455 -4.9 -1.6 histidine phosphatase family protein compare
ABIE40_RS29780 -4.9 -1.6 hypothetical protein compare
ABIE40_RS16320 -4.8 -3.3 histidinol-phosphatase compare
ABIE40_RS11150 -4.8 -3.3 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE40_RS11065 -4.8 -2.3 zinc-binding dehydrogenase compare
ABIE40_RS25500 -4.8 -0.9 type II toxin-antitoxin system ParD family antitoxin compare
ABIE40_RS03665 -4.7 -3.0 ATP phosphoribosyltransferase compare
ABIE40_RS02725 -4.7 -3.3 histidinol dehydrogenase compare
ABIE40_RS11875 -4.7 -1.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABIE40_RS01970 -4.7 -2.2 acetylglutamate kinase compare
ABIE40_RS10725 -4.7 -2.7 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS28600 -4.7 -0.9 FAD-dependent oxidoreductase compare
ABIE40_RS02325 -4.6 -3.0 ornithine carbamoyltransferase compare
ABIE40_RS03660 -4.6 -3.2 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS19435 -4.6 -1.5 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS18925 -4.5 -3.1 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS09090 -4.5 -3.1 nitrogen regulation protein NR(I) compare
ABIE40_RS26010 -4.5 -2.0 aldolase/citrate lyase family protein compare
ABIE40_RS00595 -4.5 -8.0 glucokinase compare
ABIE40_RS08635 -4.5 -10.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS10720 -4.4 -1.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS16490 -4.4 -11.0 glycogen synthase GlgA compare
ABIE40_RS19460 -4.4 -3.0 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS09575 -4.4 -1.4 hypothetical protein compare
ABIE40_RS02410 -4.4 -0.8 hypothetical protein compare
ABIE40_RS18970 -4.3 -2.2 murein hydrolase activator EnvC compare
ABIE40_RS27250 -4.3 -1.4 hypothetical protein compare
ABIE40_RS01730 -4.3 -1.4 NifU family protein compare
ABIE40_RS06270 -4.3 -3.0 amidophosphoribosyltransferase compare
ABIE40_RS06930 -4.3 -3.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS11175 -4.3 -3.0 cobyric acid synthase compare
ABIE40_RS08645 -4.3 -2.9 LL-diaminopimelate aminotransferase compare
ABIE40_RS09725 -4.2 -2.7 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS19440 -4.2 -2.9 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS10180 -4.2 -2.9 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS19330 -4.2 -2.7 phosphoribosylanthranilate isomerase compare
ABIE40_RS06560 -4.2 -2.9 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS13410 -4.2 -2.9 anthranilate synthase compare
ABIE40_RS29390 -4.2 -0.8 hypothetical protein compare
ABIE40_RS17650 -4.2 -2.9 cobaltochelatase subunit CobS compare
ABIE40_RS20440 -4.1 -1.8 cobalt-precorrin-6A reductase compare
ABIE40_RS16570 -4.1 -2.3 tetratricopeptide repeat protein compare
ABIE40_RS11165 -4.1 -1.6 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS16070 -4.1 -2.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS15345 -4.1 -9.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS20435 -4.0 -2.1 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS09360 -4.0 -2.8 excinuclease ABC subunit UvrA compare
ABIE40_RS11495 -4.0 -2.8 acetolactate synthase 3 large subunit compare
ABIE40_RS12925 -4.0 -11.8 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS02320 -4.0 -2.7 aspartate aminotransferase family protein compare
ABIE40_RS18920 -4.0 -4.2 glutamate 5-kinase compare
ABIE40_RS05660 -3.9 -2.2 response regulator transcription factor compare
ABIE40_RS01930 -3.9 -1.3 succinyl-diaminopimelate desuccinylase compare
ABIE40_RS26855 -3.9 -1.1 hypothetical protein compare
ABIE40_RS17595 -3.9 -2.7 histidinol-phosphate transaminase compare
ABIE40_RS11155 -3.9 -2.7 cobaltochelatase subunit CobN compare
ABIE40_RS11095 -3.9 -2.7 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS19450 -3.9 -2.7 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS11995 -3.8 -1.0 TIGR01244 family sulfur transferase compare
ABIE40_RS09685 -3.8 -1.5 nitroreductase compare
ABIE40_RS26850 -3.8 -1.0 hypothetical protein compare
ABIE40_RS08425 -3.7 -1.9 iron-sulfur cluster insertion protein ErpA compare
ABIE40_RS20455 -3.7 -1.2 precorrin-8X methylmutase compare
ABIE40_RS30400 -3.7 -1.7 sulfocyanin-like copper-binding protein compare
ABIE40_RS03190 -3.7 -2.6 phosphogluconate dehydratase compare
ABIE40_RS27585 -3.7 -1.0 hypothetical protein compare
ABIE40_RS27285 -3.7 -2.4 cold-shock protein compare
ABIE40_RS20430 -3.7 -2.0 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS19130 -3.7 -2.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS19615 -3.7 -1.0 DUF1109 domain-containing protein compare
ABIE40_RS18805 -3.6 -1.0 DUF1328 domain-containing protein compare
ABIE40_RS20465 -3.5 -2.4 precorrin-6A synthase (deacetylating) compare
ABIE40_RS01135 -3.5 -0.7 50S ribosomal protein L20 compare
ABIE40_RS14985 -3.5 -1.3 glycosyltransferase compare
ABIE40_RS08005 -3.5 -1.8 dihydroxy-acid dehydratase compare
ABIE40_RS30010 -3.4 -3.0 ABC transporter ATP-binding protein compare
ABIE40_RS03405 -3.4 -1.6 anti-sigma factor compare
ABIE40_RS12135 -3.4 -2.4 methionine synthase compare
ABIE40_RS00340 -3.4 -2.0 30S ribosome-binding factor RbfA compare
ABIE40_RS30510 -3.4 -0.9 CBS domain-containing protein compare
ABIE40_RS19445 -3.4 -2.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS15920 -3.4 -0.6 50S ribosomal protein L31 compare
ABIE40_RS05155 -3.3 -4.7 DUF5330 domain-containing protein compare
ABIE40_RS10390 -3.3 -1.4 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS30535 -3.3 -0.9 hypothetical protein compare
ABIE40_RS06720 -3.3 -1.4 transcriptional regulator NrdR compare
ABIE40_RS19480 -3.2 -2.1 DUF1402 family protein compare
ABIE40_RS30775 -3.2 -0.8 ferritin-like domain-containing protein compare
ABIE40_RS19260 -3.2 -1.8 DNA polymerase III subunit epsilon compare
ABIE40_RS20445 -3.1 -0.9 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS00580 -3.1 -1.6 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS05430 -3.1 -2.1 phosphoribosylamine--glycine ligase compare
ABIE40_RS09660 -3.1 -8.4 AI-2E family transporter compare
ABIE40_RS14990 -3.1 -8.0 glycosyltransferase family 2 protein compare
ABIE40_RS18720 -3.1 -1.3 polyprenyl synthetase family protein compare
ABIE40_RS11105 -3.1 -6.4 cobyrinate a,c-diamide synthase compare
ABIE40_RS17645 -3.0 -3.6 cobaltochelatase subunit CobT compare
ABIE40_RS17590 -3.0 -1.8 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS28080 -3.0 -3.4 PepSY domain-containing protein compare
ABIE40_RS16060 -3.0 -2.8 DUF465 domain-containing protein compare
ABIE40_RS30925 -3.0 -1.7 hypothetical protein compare
ABIE40_RS29355 -3.0 -3.6 LysR family transcriptional regulator compare
ABIE40_RS22755 -3.0 -0.8 exopolysaccharide biosynthesis protein compare
ABIE40_RS14980 -3.0 -4.1 glycoside hydrolase family 16 protein compare
ABIE40_RS00230 -3.0 -2.1 AEC family transporter compare
ABIE40_RS00930 -2.9 -6.6 ABC transporter permease compare
ABIE40_RS06725 -2.9 -5.3 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS10155 -2.9 -1.1 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS28310 -2.9 -1.9 DoxX family protein compare
ABIE40_RS30315 -2.8 -1.0 hypothetical protein compare
ABIE40_RS30305 -2.8 -1.6 hypothetical protein compare
ABIE40_RS16655 -2.8 -4.9 creatininase family protein compare
ABIE40_RS00935 -2.8 -5.7 ABC transporter substrate-binding protein compare
ABIE40_RS04475 -2.8 -7.5 phosphoadenylyl-sulfate reductase compare
ABIE40_RS30225 -2.8 -2.5 hypothetical protein compare
ABIE40_RS29160 -2.7 -1.6 hypothetical protein compare
ABIE40_RS29515 -2.7 -2.1 hypothetical protein compare
ABIE40_RS11085 -2.7 -2.4 acyl carrier protein compare
ABIE40_RS22150 -2.7 -2.6 hypothetical protein compare
ABIE40_RS09920 -2.7 -3.0 fluoride efflux transporter CrcB compare
ABIE40_RS22660 -2.6 -3.6 class 1b ribonucleoside-diphosphate reductase subunit alpha compare
ABIE40_RS13005 -2.6 -4.5 pyrroline-5-carboxylate reductase compare
ABIE40_RS00960 -2.6 -2.8 formyltetrahydrofolate deformylase compare
ABIE40_RS09980 -2.6 -1.2 Fe-S cluster assembly scaffold SufA compare
ABIE40_RS30705 -2.6 -1.3 hypothetical protein compare
ABIE40_RS09140 -2.6 -6.3 siroheme synthase CysG compare
ABIE40_RS01005 -2.6 -1.8 DUF2282 domain-containing protein compare
ABIE40_RS12115 -2.5 -1.6 GntR family transcriptional regulator compare
ABIE40_RS04470 -2.5 -7.8 sulfate adenylyltransferase subunit CysD compare
ABIE40_RS14450 -2.5 -2.3 RNA polymerase sigma factor compare
ABIE40_RS09450 -2.5 -2.2 helix-turn-helix domain-containing protein compare
ABIE40_RS12395 -2.4 -2.3 AlpA family phage regulatory protein compare
ABIE40_RS29785 -2.4 -1.7 hypothetical protein compare
ABIE40_RS03160 -2.4 -10.1 ABC transporter substrate-binding protein compare
ABIE40_RS09800 -2.4 -3.5 MerR family DNA-binding transcriptional regulator compare
ABIE40_RS30895 -2.4 -1.2 cytochrome o ubiquinol oxidase subunit IV compare
ABIE40_RS20090 -2.3 -2.8 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS08140 -2.3 -7.7 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS15760 -2.3 -4.0 Holliday junction branch migration DNA helicase RuvB compare
ABIE40_RS06050 -2.3 -4.3 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS09170 -2.3 -3.6 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS19360 -2.3 -3.9 double-strand break repair helicase AddA compare
ABIE40_RS30520 -2.3 -0.6 hypothetical protein compare
ABIE40_RS09720 -2.3 -3.2 GTP cyclohydrolase I FolE compare
ABIE40_RS08970 -2.2 -6.0 citrate synthase compare
ABIE40_RS09425 -2.2 -3.6 peptidylprolyl isomerase compare
ABIE40_RS03685 -2.2 -1.0 hypothetical protein compare
ABIE40_RS05670 -2.2 -2.9 membrane protein compare
ABIE40_RS18055 -2.2 -3.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS18500 -2.1 -2.8 LysR family transcriptional regulator compare
ABIE40_RS27770 -2.1 -1.9 hypothetical protein compare
ABIE40_RS05735 -2.1 -2.2 hypothetical protein compare
ABIE40_RS27580 -2.1 -2.3 ProQ/FINO family protein compare
ABIE40_RS12705 -2.1 -2.1 hypothetical protein compare
ABIE40_RS09085 -2.1 -3.4 nitrogen regulation protein NR(II) compare
ABIE40_RS15010 -2.1 -5.9 metallophosphoesterase compare
ABIE40_RS03180 -2.1 -6.9 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
ABIE40_RS01055 -2.1 -4.2 translation elongation factor 4 compare
ABIE40_RS07040 -2.1 -1.6 cupin domain-containing protein compare
ABIE40_RS05595 -2.1 -1.9 DUF3168 domain-containing protein compare
ABIE40_RS17290 -2.0 -4.9 peptide chain release factor N(5)-glutamine methyltransferase compare
ABIE40_RS03515 -2.0 -1.4 glutamate--cysteine ligase compare
ABIE40_RS08850 -2.0 -1.5 DUF3597 domain-containing protein compare
ABIE40_RS20450 -2.0 -1.7 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS08935 -2.0 -1.6 RIP metalloprotease RseP compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Thymidine in Rhizobium sp. OAE497

For carbon source Thymidine across organisms