Experiment set1IT088 for Variovorax sp. OAS795

Compare to:

L-Phenylalanine carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS20615 -8.7 -6.0 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS15380 -7.9 -7.7 nitrite/sulfite reductase compare
ABID97_RS16595 -7.9 -5.4 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS09045 -7.5 -7.3 SDR family oxidoreductase compare
ABID97_RS06515 -7.3 -5.0 SDR family oxidoreductase compare
ABID97_RS25355 -7.2 -11.0 Lrp/AsnC family transcriptional regulator conserved
ABID97_RS08780 -7.1 -4.9 4a-hydroxytetrahydrobiopterin dehydratase compare
ABID97_RS25370 -7.0 -13.5 phenylalanine 4-monooxygenase conserved
ABID97_RS03955 -7.0 -9.6 fumarylacetoacetase compare
ABID97_RS25360 -6.5 -18.2 4-hydroxyphenylpyruvate dioxygenase conserved
ABID97_RS07430 -6.3 -8.9 pantoate--beta-alanine ligase compare
ABID97_RS17310 -6.3 -4.3 PLP-dependent aminotransferase family protein compare
ABID97_RS16600 -6.0 -5.9 CysB family HTH-type transcriptional regulator compare
ABID97_RS01565 -6.0 -10.8 DNA starvation/stationary phase protection protein compare
ABID97_RS01905 -6.0 -5.4 PDR/VanB family oxidoreductase compare
ABID97_RS01910 -5.7 -11.6 TetR family transcriptional regulator C-terminal domain-containing protein compare
ABID97_RS07405 -5.4 -12.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS12400 -5.3 -3.0 maleylacetoacetate isomerase compare
ABID97_RS16910 -5.3 -8.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS07435 -5.1 -9.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS19440 -4.9 -3.7 CoA transferase subunit A compare
ABID97_RS10885 -4.7 -3.2 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS05260 -4.6 -1.9 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS05250 -4.4 -4.3 anthranilate synthase component I compare
ABID97_RS22620 -4.3 -9.0 response regulator transcription factor compare
ABID97_RS07410 -4.2 -9.4 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS08425 -4.2 -4.1 tryptophan synthase subunit alpha compare
ABID97_RS07850 -4.2 -6.6 ABC transporter ATP-binding protein compare
ABID97_RS22135 -4.0 -1.6 LysR family transcriptional regulator compare
ABID97_RS01955 -4.0 -8.5 FadR/GntR family transcriptional regulator compare
ABID97_RS07855 -4.0 -4.3 ABC transporter ATP-binding protein compare
ABID97_RS23425 -3.9 -2.7 tRNA-Pro compare
ABID97_RS17590 -3.9 -13.9 endopeptidase La compare
ABID97_RS17895 -3.9 -9.2 transcriptional regulator NrdR compare
ABID97_RS07415 -3.8 -15.7 quinolinate synthase NadA compare
ABID97_RS25015 -3.8 -2.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS06575 -3.8 -8.0 trehalose-phosphatase compare
ABID97_RS22625 -3.8 -10.6 HAMP domain-containing sensor histidine kinase compare
ABID97_RS07000 -3.6 -9.3 threonine ammonia-lyase, biosynthetic compare
ABID97_RS13990 -3.6 -2.5 amino acid aminotransferase compare
ABID97_RS06345 -3.6 -2.4 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS02600 -3.5 -2.4 homoserine O-acetyltransferase compare
ABID97_RS16565 -3.5 -12.0 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS03415 -3.5 -8.3 histidine utilization repressor compare
ABID97_RS16535 -3.5 -8.3 arginine/lysine/ornithine decarboxylase compare
ABID97_RS07845 -3.4 -11.5 ABC transporter ATP-binding protein compare
ABID97_RS09180 -3.4 -4.6 DNA polymerase I compare
ABID97_RS24055 -3.3 -3.6 TetR/AcrR family transcriptional regulator compare
ABID97_RS11115 -3.3 -15.8 isocitrate lyase compare
ABID97_RS10105 -3.2 -4.7 CBS domain-containing protein compare
ABID97_RS19065 -3.2 -7.5 GntR family transcriptional regulator compare
ABID97_RS15375 -3.2 -4.0 DUF934 domain-containing protein compare
ABID97_RS12180 -3.2 -2.2 hypothetical protein compare
ABID97_RS05275 -3.1 -2.1 anthranilate phosphoribosyltransferase compare
ABID97_RS07840 -3.1 -9.1 branched-chain amino acid ABC transporter permease compare
ABID97_RS17600 -3.1 -2.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS07440 -3.0 -13.1 L-aspartate oxidase compare
ABID97_RS03805 -2.9 -1.6 ATP-binding protein compare
ABID97_RS13860 -2.9 -5.6 hypothetical protein compare
ABID97_RS24170 -2.8 -5.8 ATP-binding protein compare
ABID97_RS05750 -2.7 -1.9 glycosyltransferase compare
ABID97_RS25365 -2.7 -5.5 transporter substrate-binding domain-containing protein compare
ABID97_RS12610 -2.7 -3.3 flavoprotein compare
ABID97_RS21150 -2.7 -9.4 FAD-dependent oxidoreductase compare
ABID97_RS06275 -2.7 -1.8 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS10705 -2.5 -6.4 H-NS histone family protein compare
ABID97_RS03960 -2.5 -8.2 homogentisate 1,2-dioxygenase compare
ABID97_RS25525 -2.5 -4.7 LacI family DNA-binding transcriptional regulator compare
ABID97_RS03125 -2.5 -9.5 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS14925 -2.5 -11.6 arginyltransferase compare
ABID97_RS05280 -2.4 -1.7 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS08435 -2.4 -1.7 phosphoribosylanthranilate isomerase compare
ABID97_RS03910 -2.4 -1.6 orotate phosphoribosyltransferase compare
ABID97_RS28990 -2.4 -5.1 aspartate 1-decarboxylase compare
ABID97_RS05755 -2.4 -2.3 glycosyltransferase compare
ABID97_RS27450 -2.4 -1.3 biotin-independent malonate decarboxylase subunit gamma compare
ABID97_RS05765 -2.3 -1.6 UDP-glucose 4-epimerase GalE compare
ABID97_RS06160 -2.3 -8.3 GTP-binding protein compare
ABID97_RS04605 -2.3 -12.5 glutamate--cysteine ligase compare
ABID97_RS15665 -2.3 -8.2 [protein-PII] uridylyltransferase compare
ABID97_RS16690 -2.3 -6.8 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS03800 -2.3 -2.2 O-antigen ligase family protein compare
ABID97_RS10695 -2.3 -6.9 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS10355 -2.2 -7.5 FadR/GntR family transcriptional regulator compare
ABID97_RS06460 -2.2 -1.5 sigma 54-interacting transcriptional regulator compare
ABID97_RS23455 -2.2 -3.6 hypothetical protein compare
ABID97_RS04500 -2.2 -1.5 HPr(Ser) kinase/phosphatase compare
ABID97_RS04855 -2.2 -3.5 CinA family protein compare
ABID97_RS13450 -2.2 -3.0 TetR/AcrR family transcriptional regulator compare
ABID97_RS14625 -2.1 -3.4 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS17850 -2.1 -1.1 tetratricopeptide repeat protein compare
ABID97_RS08710 -2.1 -6.9 polynucleotide adenylyltransferase PcnB compare
ABID97_RS01890 -2.0 -5.3 FAD-binding oxidoreductase compare
ABID97_RS10720 -2.0 -5.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS05820 -2.0 -4.1 FadR/GntR family transcriptional regulator compare
ABID97_RS14095 -2.0 -8.2 PAS domain S-box protein compare
ABID97_RS16920 -2.0 -10.5 NADP-dependent isocitrate dehydrogenase compare
ABID97_RS08765 -1.9 -3.7 CobD/CbiB family protein compare
ABID97_RS02215 -1.9 -14.1 3',5'-cyclic-nucleotide phosphodiesterase compare
ABID97_RS26470 -1.9 -1.5 c-type cytochrome compare
ABID97_RS23450 -1.9 -4.9 MBOAT family protein compare
ABID97_RS11545 -1.9 -1.3 branched-chain amino acid ABC transporter permease compare
ABID97_RS10690 -1.9 -7.8 GlsB/YeaQ/YmgE family stress response membrane protein compare
ABID97_RS27085 -1.9 -1.3 DNA alkylation repair protein compare
ABID97_RS17200 -1.8 -11.7 ribonuclease R compare
ABID97_RS02420 -1.8 -8.3 protealysin inhibitor emfourin compare
ABID97_RS20610 -1.8 -7.4 DNA-binding protein YbiB compare
ABID97_RS00110 -1.8 -1.7 SGNH/GDSL hydrolase family protein compare
ABID97_RS16290 -1.7 -7.3 protein-glutamate O-methyltransferase CheR compare
ABID97_RS08480 -1.7 -1.2 citrate synthase compare
ABID97_RS03970 -1.7 -8.4 FAD-dependent oxidoreductase compare
ABID97_RS23695 -1.7 -8.1 heat-inducible transcriptional repressor HrcA compare
ABID97_RS10590 -1.7 -8.8 nicotinate phosphoribosyltransferase compare
ABID97_RS05515 -1.7 -1.6 AEC family transporter compare
ABID97_RS14850 -1.7 -2.2 P-II family nitrogen regulator compare
ABID97_RS23635 -1.6 -9.7 non-canonical purine NTP pyrophosphatase compare
ABID97_RS03675 -1.6 -6.3 DMT family transporter compare
ABID97_RS23225 -1.6 -10.0 glutamate synthase-related protein compare
ABID97_RS21055 -1.6 -6.5 2OG-Fe dioxygenase family protein compare
ABID97_RS06450 -1.6 -2.1 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS14975 -1.5 -4.2 hypothetical protein compare
ABID97_RS23170 -1.5 -1.8 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
ABID97_RS01650 -1.5 -1.0 orotidine-5'-phosphate decarboxylase compare
ABID97_RS16705 -1.5 -10.3 ribonuclease G compare
ABID97_RS06190 -1.5 -3.9 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS23910 -1.5 -5.0 SCO family protein compare
ABID97_RS24920 -1.5 -1.4 Holliday junction branch migration protein RuvA compare
ABID97_RS05370 -1.5 -4.4 ATP-binding protein compare
ABID97_RS07775 -1.5 -2.1 phosphoribosylglycinamide formyltransferase compare
ABID97_RS01880 -1.4 -2.2 ABC transporter ATP-binding protein compare
ABID97_RS13245 -1.4 -1.1 XRE family transcriptional regulator compare
ABID97_RS05670 -1.4 -1.4 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS08430 -1.4 -1.4 tryptophan synthase subunit beta compare
ABID97_RS08240 -1.4 -2.1 heme biosynthesis HemY N-terminal domain-containing protein compare
ABID97_RS23655 -1.4 -5.2 YicC/YloC family endoribonuclease compare
ABID97_RS11170 -1.4 -3.7 GntR family transcriptional regulator compare
ABID97_RS19375 -1.4 -3.1 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS13155 -1.4 -2.5 MarR family winged helix-turn-helix transcriptional regulator compare
ABID97_RS29170 -1.4 -1.6 alpha/beta hydrolase compare
ABID97_RS07500 -1.4 -1.8 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS09595 -1.3 -1.3 Arc family DNA-binding protein compare
ABID97_RS25305 -1.3 -5.8 NAD(P)H-dependent oxidoreductase compare
ABID97_RS28635 -1.3 -4.6 IclR family transcriptional regulator compare
ABID97_RS13750 -1.3 -1.0 hypothetical protein compare
ABID97_RS17360 -1.3 -1.6 alpha/beta hydrolase compare
ABID97_RS29015 -1.3 -1.1 transcriptional regulator GcvA compare
ABID97_RS10710 -1.3 -5.2 NADPH:quinone oxidoreductase family protein compare
ABID97_RS21170 -1.3 -4.4 DEAD/DEAH box helicase compare
ABID97_RS08220 -1.3 -7.4 phosphoenolpyruvate carboxylase compare
ABID97_RS20265 -1.3 -2.6 site-specific tyrosine recombinase XerD compare
ABID97_RS27795 -1.3 -0.9 TetR/AcrR family transcriptional regulator compare
ABID97_RS19325 -1.2 -1.6 DUF2894 domain-containing protein compare
ABID97_RS14160 -1.2 -5.0 cell division protein ZapE compare
ABID97_RS23330 -1.2 -5.5 c-type cytochrome compare
ABID97_RS10685 -1.2 -6.5 hypothetical protein compare
ABID97_RS13465 -1.2 -1.9 VOC family protein compare
ABID97_RS15490 -1.2 -5.9 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS21910 -1.2 -8.3 hypothetical protein compare
ABID97_RS07245 -1.2 -1.2 HIT family protein compare
ABID97_RS16560 -1.2 -7.0 response regulator compare
ABID97_RS06150 -1.2 -4.6 tyrosine recombinase XerC compare
ABID97_RS08330 -1.2 -9.0 RNA polymerase sigma factor RpoE compare
ABID97_RS20520 -1.2 -1.5 polyribonucleotide nucleotidyltransferase compare
ABID97_RS26150 -1.2 -4.7 TetR/AcrR family transcriptional regulator compare
ABID97_RS14665 -1.2 -2.3 UvrD-helicase domain-containing protein compare
ABID97_RS28945 -1.2 -1.0 tripartite tricarboxylate transporter TctB family protein compare
ABID97_RS20020 -1.2 -2.0 LacI family DNA-binding transcriptional regulator compare
ABID97_RS03110 -1.2 -2.7 helix-turn-helix transcriptional regulator compare
ABID97_RS01645 -1.1 -5.0 helix-turn-helix transcriptional regulator compare
ABID97_RS23950 -1.1 -7.1 cytochrome c oxidase assembly protein compare
ABID97_RS23940 -1.1 -4.2 cytochrome c oxidase subunit 3 compare
ABID97_RS09490 -1.1 -0.7 LapA family protein compare
ABID97_RS00745 -1.1 -4.9 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS11095 -1.1 -7.3 TetR/AcrR family transcriptional regulator compare
ABID97_RS26510 -1.1 -1.3 NUDIX hydrolase compare
ABID97_RS12580 -1.1 -1.9 methenyltetrahydromethanopterin cyclohydrolase compare
ABID97_RS01755 -1.1 -5.7 pyruvate kinase compare
ABID97_RS25830 -1.1 -1.4 Gfo/Idh/MocA family oxidoreductase compare
ABID97_RS25125 -1.1 -5.9 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS22030 -1.1 -3.9 DEAD/DEAH box helicase compare
ABID97_RS28440 -1.1 -1.6 PrpF domain-containing protein compare
ABID97_RS04710 -1.1 -6.7 malate synthase G compare
ABID97_RS03270 -1.1 -4.8 LacI family DNA-binding transcriptional regulator compare
ABID97_RS26295 -1.1 -0.9 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS17250 -1.1 -5.7 3-hydroxybutyrate dehydrogenase compare
ABID97_RS07720 -1.1 -2.5 VOC family protein compare
ABID97_RS02455 -1.1 -3.0 nucleotidyltransferase family protein compare
ABID97_RS05020 -1.1 -1.1 hypothetical protein compare
ABID97_RS28290 -1.1 -0.8 hypothetical protein compare
ABID97_RS07735 -1.1 -1.8 hypothetical protein compare
ABID97_RS15470 -1.1 -2.1 NADPH-dependent FMN reductase compare
ABID97_RS16915 -1.1 -5.1 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS06180 -1.1 -2.6 ATP-dependent protease subunit HslV compare
ABID97_RS01885 -1.1 -3.6 ABC transporter permease compare
ABID97_RS16315 -1.1 -3.4 hypothetical protein compare
ABID97_RS08215 -1.0 -1.3 hypothetical protein compare
ABID97_RS08440 -1.0 -4.1 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS13865 -1.0 -3.1 hypothetical protein compare
ABID97_RS20005 -1.0 -3.4 transglutaminase family protein compare
ABID97_RS22785 -1.0 -1.3 1,2-phenylacetyl-CoA epoxidase subunit PaaA compare


Specific Phenotypes

For 21 genes in this experiment

For carbon source L-Phenylalanine in Variovorax sp. OAS795

For carbon source L-Phenylalanine across organisms