Experiment set1IT088 for Serratia liquefaciens MT49

Compare to:

Manganese (II) chloride tetrahydrate 50 uM, anaerobic

200 most detrimental genes:

  gene name fitness t score description  
IAI46_24465 +1.4 6.0 HTH-type transcriptional repressor FabR compare
IAI46_01120 +1.4 7.8 NAD(P)H-flavin reductase compare
IAI46_03600 +1.2 10.9 GTP diphosphokinase compare
IAI46_13440 +1.1 3.3 hypothetical protein compare
IAI46_20215 +1.0 2.2 molecular chaperone Skp compare
IAI46_00620 +1.0 4.3 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI46_05905 +1.0 2.6 lipoyl(octanoyl) transferase LipB compare
IAI46_09555 +1.0 4.6 hypothetical protein compare
IAI46_12645 +0.9 1.3 DUF2946 domain-containing protein compare
IAI46_19580 +0.9 1.6 anti-sigma-E factor RseA compare
IAI46_13320 +0.9 2.7 serine protease compare
IAI46_15150 +0.9 1.3 hypothetical protein compare
IAI46_10870 +0.9 2.6 GNAT family N-acetyltransferase compare
IAI46_01080 +0.8 2.8 Sec-independent protein translocase subunit TatA compare
IAI46_17670 +0.8 1.6 NADH-quinone oxidoreductase subunit J compare
IAI46_10255 +0.8 1.6 stress-induced protein YchH compare
IAI46_09995 +0.8 1.8 DNA polymerase III subunit theta compare
IAI46_03190 +0.8 5.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI46_14560 +0.8 1.3 multidrug/spermidine efflux SMR transporter subunit MdtI compare
IAI46_13205 +0.8 1.8 carbohydrate ABC transporter permease compare
IAI46_23265 +0.7 2.0 peptide deformylase compare
IAI46_01780 +0.7 4.5 gamma-glutamylcyclotransferase compare
IAI46_04980 +0.7 5.4 cytochrome o ubiquinol oxidase subunit I compare
IAI46_12080 +0.7 1.2 amino acid ABC transporter ATP-binding protein compare
IAI46_02605 +0.7 1.8 biopolymer transporter ExbD compare
IAI46_07015 +0.7 2.8 LysE family translocator compare
IAI46_23835 +0.7 2.5 Fe-S biogenesis protein NfuA compare
IAI46_14385 +0.7 1.8 GNAT family N-acetyltransferase compare
IAI46_14600 +0.7 3.7 murein DD-endopeptidase MepM compare
IAI46_16435 +0.7 1.7 RidA family protein compare
IAI46_11865 +0.7 3.7 peptidase domain-containing ABC transporter compare
IAI46_03195 +0.7 5.9 carbamoyl-phosphate synthase large subunit compare
IAI46_08015 +0.7 2.3 protein tyrosine phosphatase compare
IAI46_13795 +0.7 2.5 stationary-phase-induced ribosome-associated protein compare
IAI46_02275 +0.7 3.1 aspartate carbamoyltransferase compare
IAI46_13620 +0.7 2.2 hypothetical protein compare
IAI46_10655 +0.7 1.5 hydrolase compare
IAI46_05760 +0.7 2.1 RidA family protein compare
IAI46_11820 +0.7 1.9 alpha/beta hydrolase compare
IAI46_12615 +0.7 1.6 hypothetical protein compare
IAI46_11320 +0.7 2.2 superoxide dismutase family protein compare
IAI46_09185 +0.6 1.7 hypothetical protein compare
IAI46_09405 +0.6 1.9 hypothetical protein compare
IAI46_15100 +0.6 2.5 hypothetical protein compare
IAI46_14680 +0.6 1.9 hypothetical protein compare
IAI46_09340 +0.6 3.0 hypothetical protein compare
IAI46_14245 +0.6 2.3 UTP--glucose-1-phosphate uridylyltransferase GalU compare
IAI46_11295 +0.6 2.1 NAD(P)-dependent oxidoreductase compare
IAI46_15190 +0.6 1.5 hypothetical protein compare
IAI46_10150 +0.6 1.7 Rho-binding antiterminator compare
IAI46_12915 +0.6 1.0 DUF1428 family protein compare
IAI46_09355 +0.6 0.8 hypothetical protein compare
IAI46_12525 +0.6 1.9 respiratory chain complex I subunit 1 family protein compare
IAI46_07875 +0.6 1.1 hypothetical protein compare
IAI46_13170 +0.6 2.5 pyridoxal kinase compare
IAI46_11005 +0.6 1.4 glutathione peroxidase compare
IAI46_11465 +0.6 1.5 electron transport complex subunit RsxG compare
IAI46_15955 +0.6 2.0 flagellar basal body rod protein FlgC compare
IAI46_09985 +0.6 2.2 RNA polymerase-binding protein DksA compare
IAI46_11755 +0.6 1.5 carbohydrate kinase family protein compare
IAI46_10385 +0.6 1.5 cupin domain-containing protein compare
IAI46_19745 +0.6 1.7 hypothetical protein compare
IAI46_00700 +0.6 3.9 class I adenylate cyclase compare
IAI46_02410 +0.6 1.2 hypothetical protein compare
IAI46_17680 +0.5 1.1 NADH-quinone oxidoreductase subunit NuoH compare
IAI46_24845 +0.5 3.6 orotate phosphoribosyltransferase compare
IAI46_18590 +0.5 2.2 hypothetical protein compare
IAI46_12700 +0.5 1.9 DUF1493 family protein compare
IAI46_19180 +0.5 1.3 helix-turn-helix transcriptional regulator compare
IAI46_12725 +0.5 1.1 TetR/AcrR family transcriptional regulator compare
IAI46_13970 +0.5 1.2 type I DNA topoisomerase compare
IAI46_06080 +0.5 2.6 ROK family transcriptional regulator compare
IAI46_12665 +0.5 1.2 aldehyde dehydrogenase family protein compare
IAI46_13335 +0.5 1.4 FMN-dependent NADH-azoreductase compare
IAI46_16095 +0.5 1.3 MaoC family dehydratase compare
IAI46_09425 +0.5 1.5 hypothetical protein compare
IAI46_21155 +0.5 2.2 Hok/Gef family protein compare
IAI46_17345 +0.5 2.1 16S rRNA pseudouridine(516) synthase RsuA compare
IAI46_08870 +0.5 1.4 macrodomain Ter protein MatP compare
IAI46_24895 +0.5 1.8 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
IAI46_16885 +0.5 1.9 ABC transporter permease compare
IAI46_15215 +0.5 2.6 hypothetical protein compare
IAI46_10355 +0.5 1.9 NAD-dependent protein deacylase compare
IAI46_08540 +0.5 2.1 glutathione transferase GstA compare
IAI46_15645 +0.5 1.5 ABC transporter permease compare
IAI46_05320 +0.5 1.4 NfeD family protein compare
IAI46_09375 +0.5 0.7 TraR/DksA family transcriptional regulator compare
IAI46_06695 +0.5 2.1 fimbrial protein compare
IAI46_15685 +0.5 1.2 siderophore-interacting protein compare
IAI46_10940 +0.5 1.3 CAP-Gly protein compare
IAI46_13800 +0.5 1.5 hypothetical protein compare
IAI46_12925 +0.5 2.5 alpha-glucosidase compare
IAI46_01540 +0.5 2.6 fumarate reductase subunit FrdC compare
IAI46_15965 +0.5 1.2 flagellar basal body P-ring formation protein FlgA compare
IAI46_08530 +0.5 1.4 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI46_18505 +0.5 1.9 sulfate/thiosulfate ABC transporter permease CysT compare
IAI46_19915 +0.5 0.8 DUF1289 domain-containing protein compare
IAI46_22260 +0.5 1.1 phage holin family protein compare
IAI46_08040 +0.5 1.3 acyltransferase compare
IAI46_08135 +0.5 1.4 DUF4422 domain-containing protein compare
IAI46_06670 +0.5 2.3 type 1 fimbrial protein compare
IAI46_13025 +0.5 1.0 ABC transporter ATP-binding protein compare
IAI46_00560 +0.5 2.4 peptidylprolyl isomerase compare
IAI46_07650 +0.5 1.8 common pilus major fimbrillin subunit EcpA compare
IAI46_06075 +0.5 2.5 HAD-IIA family hydrolase compare
IAI46_10865 +0.5 1.9 fructosamine kinase family protein compare
IAI46_12880 +0.5 1.9 MFS transporter compare
IAI46_10845 +0.5 1.3 metal-dependent hydrolase compare
IAI46_10455 +0.5 1.4 23S rRNA pseudouridine(2457) synthase RluE compare
IAI46_05460 +0.5 1.5 hypothetical protein compare
IAI46_13710 +0.5 1.7 hypothetical protein compare
IAI46_10090 +0.5 1.7 sugar ABC transporter substrate-binding protein compare
IAI46_19705 +0.5 1.6 hypothetical protein compare
IAI46_05565 +0.5 2.3 hypothetical protein compare
IAI46_07410 +0.5 2.2 helix-turn-helix transcriptional regulator compare
IAI46_13475 +0.5 2.0 TIGR01620 family protein compare
IAI46_04975 +0.5 2.9 cytochrome o ubiquinol oxidase subunit III compare
IAI46_02050 +0.5 2.2 YhbP family protein compare
IAI46_12040 +0.5 2.4 ABC transporter ATP-binding protein compare
IAI46_15940 +0.5 1.5 flagellar basal body rod protein FlgF compare
IAI46_19360 +0.5 1.7 Fe-S cluster assembly transcriptional regulator IscR compare
IAI46_11430 +0.5 1.4 cupin domain-containing protein compare
IAI46_12670 +0.5 1.5 MarR family transcriptional regulator compare
IAI46_15610 +0.5 1.5 two-component system response regulator NarL compare
IAI46_19240 +0.5 2.5 hypothetical protein compare
IAI46_01070 +0.5 0.6 SCP2 domain-containing protein compare
IAI46_06150 +0.4 0.9 helix-turn-helix transcriptional regulator compare
IAI46_00625 +0.4 2.9 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI46_14930 +0.4 1.3 peptidoglycan-binding protein LysM compare
IAI46_19675 +0.4 2.3 DUF2290 domain-containing protein compare
IAI46_09615 +0.4 1.8 YceK/YidQ family lipoprotein compare
IAI46_12560 +0.4 1.1 hydrogenase formation protein HypD compare
IAI46_04965 +0.4 2.4 protoheme IX farnesyltransferase compare
IAI46_15220 +0.4 1.5 hypothetical protein compare
IAI46_06260 +0.4 2.2 succinate dehydrogenase membrane anchor subunit compare
IAI46_17595 +0.4 1.4 DUF1097 domain-containing protein compare
IAI46_09755 +0.4 1.7 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
IAI46_16165 +0.4 0.8 3-oxoadipyl-CoA thiolase compare
IAI46_14915 +0.4 1.5 DUF1304 domain-containing protein compare
IAI46_15060 +0.4 1.9 phage head morphogenesis protein compare
IAI46_06315 +0.4 0.9 tol-pal system-associated acyl-CoA thioesterase compare
IAI46_14960 +0.4 1.9 DUF2612 domain-containing protein compare
IAI46_02200 +0.4 1.2 S-type pyocin domain-containing protein compare
IAI46_16005 +0.4 1.2 protein phosphatase CheZ compare
IAI46_16025 +0.4 1.6 Tar ligand binding domain-containing protein compare
IAI46_17855 +0.4 1.5 helix-turn-helix transcriptional regulator compare
IAI46_11225 +0.4 2.1 cyclopropane fatty acyl phospholipid synthase compare
IAI46_12625 +0.4 1.7 NADH:flavin oxidoreductase/NADH oxidase family protein compare
IAI46_12735 +0.4 1.2 agmatine deiminase family protein compare
IAI46_13610 +0.4 2.2 hypothetical protein compare
IAI46_01200 +0.4 0.9 tRNA-Thr compare
IAI46_15635 +0.4 1.2 ABC transporter ATP-binding protein compare
IAI46_08350 +0.4 1.0 glutaredoxin, GrxA family compare
IAI46_12795 +0.4 1.8 6-phospho-beta-glucosidase compare
IAI46_15095 +0.4 1.7 lysozyme compare
IAI46_04655 +0.4 1.4 shikimate kinase AroL compare
IAI46_12280 +0.4 1.1 ABC transporter permease subunit compare
IAI46_06440 +0.4 0.8 cysteine hydrolase compare
IAI46_06750 +0.4 2.5 LysR family transcriptional regulator compare
IAI46_04985 +0.4 2.1 cytochrome o ubiquinol oxidase subunit II compare
IAI46_18330 +0.4 1.6 Fe2+-enterobactin ABC transporter substrate-binding protein compare
IAI46_11835 +0.4 1.6 winged helix-turn-helix transcriptional regulator compare
IAI46_12450 +0.4 0.9 SDR family oxidoreductase compare
IAI46_18495 +0.4 1.6 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
IAI46_11750 +0.4 1.3 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
IAI46_16210 +0.4 1.4 hypothetical protein compare
IAI46_18720 +0.4 1.4 GNAT family N-acetyltransferase compare
IAI46_23915 +0.4 1.6 glycerol-3-phosphate dehydrogenase compare
IAI46_12865 +0.4 1.1 myo-inosose-2 dehydratase compare
IAI46_14980 +0.4 1.7 oxidoreductase compare
IAI46_02385 +0.4 1.2 hypothetical protein compare
IAI46_13115 +0.4 1.1 Zn-dependent hydrolase compare
IAI46_19010 +0.4 2.3 YegP family protein compare
IAI46_17710 +0.4 0.8 NADH-quinone oxidoreductase subunit A compare
IAI46_11420 +0.4 0.9 RidA family protein compare
IAI46_15315 +0.4 0.8 succinylglutamate desuccinylase compare
IAI46_06130 +0.4 1.5 LexA regulated protein compare
IAI46_11415 +0.4 1.8 hypothetical protein compare
IAI46_14170 +0.4 1.0 DUF1937 family protein compare
IAI46_00600 +0.4 2.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
IAI46_21925 +0.4 1.8 esterase YqiA compare
IAI46_10165 +0.4 1.4 universal stress protein compare
IAI46_01980 +0.4 2.1 sulfurtransferase-like selenium metabolism protein YedF compare
IAI46_02445 +0.4 1.1 hypothetical protein compare
IAI46_10505 +0.4 1.6 DUF1835 domain-containing protein compare
IAI46_02995 +0.4 1.8 inosine/xanthosine triphosphatase compare
IAI46_07565 +0.4 1.8 outer membrane protein OmpX compare
IAI46_08450 +0.4 2.3 DUF2867 domain-containing protein compare
IAI46_09980 +0.4 1.5 exodeoxyribonuclease X compare
IAI46_11455 +0.4 1.2 endonuclease III compare
IAI46_00235 +0.4 1.0 glutathione S-transferase compare
IAI46_12620 +0.4 1.4 MerR family transcriptional regulator compare
IAI46_09400 +0.4 0.7 hypothetical protein compare
IAI46_08810 +0.4 1.0 cell division protein ZapC compare
IAI46_20660 +0.4 0.8 chaperone modulator CbpM compare
IAI46_17635 +0.4 2.1 Tn3 family transposase compare
IAI46_03890 +0.4 1.5 DedA family protein compare
IAI46_02100 +0.4 1.8 phosphonate C-P lyase system protein PhnH compare
IAI46_06295 +0.4 2.1 cytochrome ubiquinol oxidase subunit I compare
IAI46_12720 +0.4 1.5 MFS transporter compare


Specific Phenotypes

None in this experiment

For Serratia liquefaciens MT49 in stress experiments

For stress Manganese (II) chloride tetrahydrate across organisms