Experiment set1IT087 for Variovorax sp. OAS795

Compare to:

L-Leucine carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS25100 -8.2 -5.7 hydroxymethylglutaryl-CoA lyase compare
ABID97_RS25115 -7.5 -7.3 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha compare
ABID97_RS01565 -6.7 -9.6 DNA starvation/stationary phase protection protein compare
ABID97_RS25190 -6.6 -16.0 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABID97_RS28635 -6.5 -3.9 IclR family transcriptional regulator compare
ABID97_RS07850 -6.4 -7.6 ABC transporter ATP-binding protein compare
ABID97_RS25125 -6.3 -9.7 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS25140 -6.3 -14.8 isovaleryl-CoA dehydrogenase conserved
ABID97_RS01860 -6.0 -26.0 indolepyruvate ferredoxin oxidoreductase family protein conserved
ABID97_RS20615 -6.0 -6.9 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS11115 -5.9 -13.4 isocitrate lyase compare
ABID97_RS16910 -5.7 -8.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS25130 -5.6 -10.0 carboxyl transferase domain-containing protein compare
ABID97_RS07840 -5.6 -10.1 branched-chain amino acid ABC transporter permease compare
ABID97_RS15380 -5.5 -10.1 nitrite/sulfite reductase compare
ABID97_RS16600 -5.4 -9.1 CysB family HTH-type transcriptional regulator compare
ABID97_RS07845 -5.2 -12.5 ABC transporter ATP-binding protein compare
ABID97_RS06575 -5.1 -8.6 trehalose-phosphatase compare
ABID97_RS22625 -5.1 -13.5 HAMP domain-containing sensor histidine kinase compare
ABID97_RS25145 -5.1 -6.1 AraC family transcriptional regulator compare
ABID97_RS16565 -5.1 -14.3 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS05260 -4.9 -2.0 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS04710 -4.9 -12.2 malate synthase G compare
ABID97_RS22620 -4.8 -8.5 response regulator transcription factor compare
ABID97_RS05250 -4.7 -6.4 anthranilate synthase component I compare
ABID97_RS08425 -4.6 -4.4 tryptophan synthase subunit alpha compare
ABID97_RS25085 -4.5 -3.1 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS25015 -4.3 -2.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS16595 -4.2 -7.5 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS07405 -4.2 -13.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS07855 -4.1 -2.9 ABC transporter ATP-binding protein compare
ABID97_RS09180 -4.1 -4.9 DNA polymerase I compare
ABID97_RS07430 -4.0 -12.3 pantoate--beta-alanine ligase compare
ABID97_RS07435 -3.9 -9.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS02455 -3.7 -4.5 nucleotidyltransferase family protein compare
ABID97_RS12180 -3.6 -2.5 hypothetical protein compare
ABID97_RS16535 -3.6 -9.6 arginine/lysine/ornithine decarboxylase compare
ABID97_RS13860 -3.6 -7.9 hypothetical protein compare
ABID97_RS05275 -3.6 -2.4 anthranilate phosphoribosyltransferase compare
ABID97_RS23455 -3.6 -2.5 hypothetical protein compare
ABID97_RS17600 -3.6 -2.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS13990 -3.5 -4.1 amino acid aminotransferase compare
ABID97_RS06600 -3.5 -7.0 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS02600 -3.5 -5.3 homoserine O-acetyltransferase compare
ABID97_RS15375 -3.5 -6.8 DUF934 domain-containing protein compare
ABID97_RS23425 -3.5 -3.2 tRNA-Pro compare
ABID97_RS14265 -3.4 -10.1 protease modulator HflC compare
ABID97_RS03805 -3.2 -1.8 ATP-binding protein compare
ABID97_RS06345 -3.2 -4.8 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS05755 -3.1 -2.1 glycosyltransferase compare
ABID97_RS28990 -3.1 -5.6 aspartate 1-decarboxylase compare
ABID97_RS03800 -3.1 -2.1 O-antigen ligase family protein compare
ABID97_RS17590 -3.0 -15.4 endopeptidase La compare
ABID97_RS15370 -3.0 -12.4 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS14260 -3.0 -8.6 FtsH protease activity modulator HflK compare
ABID97_RS14160 -2.9 -8.5 cell division protein ZapE compare
ABID97_RS07775 -2.9 -5.2 phosphoribosylglycinamide formyltransferase compare
ABID97_RS05280 -2.9 -2.0 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS03910 -2.9 -2.0 orotate phosphoribosyltransferase compare
ABID97_RS25525 -2.9 -4.9 LacI family DNA-binding transcriptional regulator compare
ABID97_RS08435 -2.8 -1.9 phosphoribosylanthranilate isomerase compare
ABID97_RS05750 -2.8 -3.2 glycosyltransferase compare
ABID97_RS06450 -2.7 -1.9 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS16705 -2.7 -14.5 ribonuclease G compare
ABID97_RS04765 -2.7 -1.8 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS07500 -2.7 -3.1 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS06460 -2.7 -1.8 sigma 54-interacting transcriptional regulator compare
ABID97_RS04500 -2.7 -1.8 HPr(Ser) kinase/phosphatase compare
ABID97_RS05765 -2.7 -2.6 UDP-glucose 4-epimerase GalE compare
ABID97_RS15665 -2.6 -7.9 [protein-PII] uridylyltransferase compare
ABID97_RS05370 -2.6 -6.0 ATP-binding protein compare
ABID97_RS23450 -2.5 -5.8 MBOAT family protein compare
ABID97_RS14850 -2.5 -4.9 P-II family nitrogen regulator compare
ABID97_RS17850 -2.4 -1.2 tetratricopeptide repeat protein compare
ABID97_RS21150 -2.4 -9.1 FAD-dependent oxidoreductase compare
ABID97_RS14920 -2.3 -14.6 IclR family transcriptional regulator compare
ABID97_RS15360 -2.3 -8.2 GTP-binding protein compare
ABID97_RS27635 -2.3 -1.2 NAD(P)H-dependent oxidoreductase compare
ABID97_RS19550 -2.3 -1.8 phosphatase PAP2 family protein compare
ABID97_RS03110 -2.2 -4.5 helix-turn-helix transcriptional regulator compare
ABID97_RS08775 -2.2 -2.5 ribosome small subunit-dependent GTPase A compare
ABID97_RS25900 -2.2 -2.3 ABC transporter permease compare
ABID97_RS08240 -2.2 -2.9 heme biosynthesis HemY N-terminal domain-containing protein compare
ABID97_RS08445 -2.2 -10.5 FimV/HubP family polar landmark protein compare
ABID97_RS08765 -2.1 -5.3 CobD/CbiB family protein compare
ABID97_RS16915 -2.1 -6.5 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS05670 -2.1 -1.5 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS19410 -2.1 -4.1 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS08480 -2.1 -1.4 citrate synthase compare
ABID97_RS17265 -2.1 -3.0 two-component system response regulator OmpR compare
ABID97_RS05925 -2.1 -9.7 LysR substrate-binding domain-containing protein compare
ABID97_RS23225 -2.1 -14.2 glutamate synthase-related protein compare
ABID97_RS14095 -2.0 -10.4 PAS domain S-box protein compare
ABID97_RS03680 -2.0 -7.8 lysophospholipid transporter LplT compare
ABID97_RS10105 -2.0 -4.8 CBS domain-containing protein compare
ABID97_RS07260 -2.0 -6.8 TIM44-like domain-containing protein compare
ABID97_RS03790 -2.0 -7.2 branched-chain amino acid transaminase conserved
ABID97_RS14625 -2.0 -3.8 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS00255 -2.0 -10.9 type IV pilus twitching motility protein PilT compare
ABID97_RS23915 -1.9 -4.4 heme o synthase compare
ABID97_RS15365 -1.9 -5.4 sulfate adenylyltransferase subunit CysD compare
ABID97_RS01650 -1.9 -1.3 orotidine-5'-phosphate decarboxylase compare
ABID97_RS06160 -1.9 -7.9 GTP-binding protein compare
ABID97_RS07000 -1.9 -8.4 threonine ammonia-lyase, biosynthetic compare
ABID97_RS02110 -1.9 -12.8 type IV pilus modification protein PilV compare
ABID97_RS17270 -1.9 -6.7 ATP-binding protein compare
ABID97_RS12140 -1.9 -6.6 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS02460 -1.9 -13.9 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS04630 -1.9 -5.2 glutathione synthase compare
ABID97_RS03415 -1.9 -5.4 histidine utilization repressor compare
ABID97_RS01595 -1.9 -6.2 tRNA guanosine(34) transglycosylase Tgt compare
ABID97_RS24920 -1.9 -1.8 Holliday junction branch migration protein RuvA compare
ABID97_RS02120 -1.8 -10.1 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS11640 -1.8 -7.3 TetR family transcriptional regulator compare
ABID97_RS17895 -1.8 -7.8 transcriptional regulator NrdR compare
ABID97_RS02125 -1.8 -14.7 PilC/PilY family type IV pilus protein compare
ABID97_RS23440 -1.7 -9.2 A24 family peptidase compare
ABID97_RS15465 -1.7 -9.6 sulfate ABC transporter substrate-binding protein compare
ABID97_RS19955 -1.7 -1.6 glycerol-3-phosphate dehydrogenase compare
ABID97_RS24805 -1.7 -10.2 enoyl-CoA hydratase compare
ABID97_RS05365 -1.7 -3.7 DUF4390 domain-containing protein compare
ABID97_RS24170 -1.7 -4.8 ATP-binding protein compare
ABID97_RS07415 -1.7 -10.4 quinolinate synthase NadA compare
ABID97_RS24705 -1.6 -6.2 response regulator compare
ABID97_RS23430 -1.6 -8.7 type IV-A pilus assembly ATPase PilB compare
ABID97_RS20020 -1.6 -2.6 LacI family DNA-binding transcriptional regulator compare
ABID97_RS10355 -1.6 -5.5 FadR/GntR family transcriptional regulator compare
ABID97_RS02135 -1.6 -4.5 GspH/FimT family pseudopilin compare
ABID97_RS03915 -1.6 -5.0 DUF4124 domain-containing protein compare
ABID97_RS19655 -1.6 -9.3 aminomethyl-transferring glycine dehydrogenase conserved
ABID97_RS02115 -1.6 -8.0 PilW family protein compare
ABID97_RS23435 -1.6 -10.4 type II secretion system F family protein compare
ABID97_RS10885 -1.5 -3.8 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS14925 -1.5 -7.6 arginyltransferase compare
ABID97_RS02420 -1.5 -4.9 protealysin inhibitor emfourin compare
ABID97_RS13245 -1.5 -1.3 XRE family transcriptional regulator compare
ABID97_RS19440 -1.5 -3.1 CoA transferase subunit A compare
ABID97_RS06190 -1.5 -4.2 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS16290 -1.5 -8.4 protein-glutamate O-methyltransferase CheR compare
ABID97_RS02215 -1.5 -11.9 3',5'-cyclic-nucleotide phosphodiesterase compare
ABID97_RS07410 -1.5 -7.5 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS07390 -1.5 -3.6 rhodanese-like domain-containing protein compare
ABID97_RS02130 -1.5 -7.7 type IV pilin protein compare
ABID97_RS06520 -1.5 -1.7 SAM-dependent methyltransferase compare
ABID97_RS23940 -1.5 -4.4 cytochrome c oxidase subunit 3 compare
ABID97_RS08220 -1.4 -8.5 phosphoenolpyruvate carboxylase compare
ABID97_RS18030 -1.4 -2.0 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
ABID97_RS20610 -1.4 -6.3 DNA-binding protein YbiB compare
ABID97_RS13025 -1.4 -1.1 helix-turn-helix domain-containing protein compare
ABID97_RS23950 -1.4 -7.8 cytochrome c oxidase assembly protein compare
ABID97_RS19375 -1.4 -3.8 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS05170 -1.4 -2.3 type VI secretion system tube protein Hcp compare
ABID97_RS01865 -1.4 -6.6 Lrp/AsnC family transcriptional regulator compare
ABID97_RS24040 -1.4 -2.2 MarR family transcriptional regulator compare
ABID97_RS23325 -1.4 -5.8 cytochrome c biogenesis protein ResB compare
ABID97_RS14975 -1.4 -3.7 hypothetical protein compare
ABID97_RS09490 -1.4 -1.3 LapA family protein compare
ABID97_RS19065 -1.3 -3.6 GntR family transcriptional regulator compare
ABID97_RS06095 -1.3 -9.8 MBL fold metallo-hydrolase compare
ABID97_RS22135 -1.3 -1.1 LysR family transcriptional regulator compare
ABID97_RS17665 -1.3 -1.8 DUF1993 domain-containing protein compare
ABID97_RS02140 -1.3 -7.0 sugar transferase compare
ABID97_RS10295 -1.3 -1.6 winged helix-turn-helix transcriptional regulator compare
ABID97_RS05020 -1.3 -1.4 hypothetical protein compare
ABID97_RS23330 -1.3 -6.1 c-type cytochrome compare
ABID97_RS16985 -1.3 -2.4 transcriptional repressor LexA compare
ABID97_RS10815 -1.3 -9.1 phosphoenolpyruvate synthase compare
ABID97_RS02145 -1.3 -7.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS01840 -1.3 -8.4 DUF1631 family protein compare
ABID97_RS24055 -1.3 -2.4 TetR/AcrR family transcriptional regulator compare
ABID97_RS09595 -1.2 -1.0 Arc family DNA-binding protein compare
ABID97_RS23185 -1.2 -1.3 ABC transporter ATP-binding protein compare
ABID97_RS23650 -1.2 -10.1 serine/threonine-protein kinase compare
ABID97_RS13195 -1.2 -2.1 maleylacetate reductase compare
ABID97_RS08440 -1.2 -4.7 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS14665 -1.2 -2.7 UvrD-helicase domain-containing protein compare
ABID97_RS04440 -1.2 -2.7 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta compare
ABID97_RS23935 -1.2 -1.4 twin transmembrane helix small protein compare
ABID97_RS27720 -1.2 -1.2 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS22860 -1.2 -2.3 MurR/RpiR family transcriptional regulator compare
ABID97_RS15995 -1.2 -3.4 PilZ domain-containing protein compare
ABID97_RS16920 -1.2 -7.3 NADP-dependent isocitrate dehydrogenase compare
ABID97_RS06275 -1.2 -1.1 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS08430 -1.2 -1.8 tryptophan synthase subunit beta compare
ABID97_RS04760 -1.2 -1.2 SPOR domain-containing protein compare
ABID97_RS13865 -1.2 -3.0 hypothetical protein compare
ABID97_RS08865 -1.2 -2.3 cyclase family protein compare
ABID97_RS06175 -1.2 -9.1 STAS domain-containing protein compare
ABID97_RS03640 -1.2 -4.3 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS17595 -1.2 -5.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS14540 -1.1 -1.7 transcriptional regulator compare
ABID97_RS16690 -1.1 -3.0 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS06315 -1.1 -8.4 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS17200 -1.1 -8.8 ribonuclease R compare
ABID97_RS16470 -1.1 -1.4 translational GTPase TypA compare
ABID97_RS14115 -1.1 -4.0 dihydrolipoyl dehydrogenase compare
ABID97_RS23920 -1.1 -6.5 COX15/CtaA family protein compare
ABID97_RS23780 -1.1 -6.3 ABC transporter permease compare
ABID97_RS00335 -1.1 -5.5 c-type cytochrome compare
ABID97_RS01825 -1.1 -7.5 LysM peptidoglycan-binding domain-containing protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Leucine in Variovorax sp. OAS795

For carbon source L-Leucine across organisms