Experiment set1IT087 for Pseudomonas putida KT2440

Compare to:

Potassium Acetate Carbon Source (5mM)

200 most important genes:

  gene name fitness t score description  
PP_0293 -5.7 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5659 -4.7 -4.6 protein of unknown function compare
PP_0184 -4.7 -9.0 Argininosuccinate lyase compare
PP_4364 -4.7 -5.5 putative Anti-sigma F factor antagonist compare
PP_4696 -4.5 -8.0 Nitrogen regulation protein NR(I) compare
PP_0691 -4.3 -6.2 Glutamate 5-kinase compare
PP_1986 -4.3 -2.9 3-isopropylmalate dehydratase small subunit compare
PP_5185 -4.3 -8.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0082 -4.2 -7.1 tryptophan synthase alpha chain compare
PP_0967 -4.2 -11.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0164 -4.2 -7.5 conserved protein of unknown function compare
PP_0289 -4.2 -9.3 Imidazoleglycerol-phosphate dehydratase compare
PP_1695 -4.0 -10.9 putative Sodium-solute symporter/sensory box histidine kinase/response regulator conserved
PP_5015 -4.0 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0966 -3.8 -11.0 Histidinol dehydrogenase compare
PP_4999 -3.7 -3.8 dihydroorotase-like protein compare
PP_5014 -3.7 -4.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_4487 -3.6 -20.3 acetyl-CoA synthetase conserved
PP_4723 -3.6 -9.6 Carbamoyl-phosphate synthase large chain compare
PP_1088 -3.6 -13.6 Argininosuccinate synthase compare
PP_4724 -3.5 -4.1 Carbamoyl-phosphate synthase small chain compare
PP_2371 -3.5 -6.2 Sulphite reductase hemoprotein, beta subunit compare
PP_4799 -3.5 -5.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0914 -3.5 -12.1 GGDEF domain protein compare
PP_0356 -3.5 -9.1 malate synthase G compare
PP_4693 -3.5 -8.8 RNA polymerase-binding transcription factor DksA compare
PP_4909 -3.4 -9.4 phosphoserine phosphatase compare
PP_4679 -3.3 -7.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4680 -3.3 -13.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4890 -3.3 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
PP_0083 -3.3 -7.6 tryptophan synthase beta chain compare
PP_1995 -3.3 -9.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0422 -3.3 -7.2 Indole-3-glycerol phosphate synthase compare
PP_4126 -3.2 -3.1 NADH-quinone oxidoreductase subunit I compare
PP_1079 -3.2 -6.9 Ornithine carbamoyltransferase compare
PP_5128 -3.1 -8.2 Dihydroxy-acid dehydratase compare
PP_1635 -3.1 -4.6 DNA-binding response regulator compare
PP_0421 -3.1 -7.6 Anthranilate phosphoribosyltransferase compare
PP_4678 -3.1 -12.5 Ketol-acid reductoisomerase compare
PP_0417 -3.1 -15.2 Anthranilate synthase component 1 compare
PP_5289 -3.1 -5.3 Acetylglutamate kinase compare
PP_0420 -3.0 -9.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5155 -3.0 -5.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0290 -3.0 -8.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4116 -2.9 -11.5 isocitrate lyase compare
PP_2327 -2.9 -8.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0965 -2.9 -8.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4058 -2.8 -12.5 1,4-alpha-glucan branching enzyme compare
PP_1988 -2.7 -9.1 3-isopropylmalate dehydrogenase compare
PP_2000 -2.7 -3.1 amidophosphoribosyl transferase compare
PP_3999 -2.7 -7.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3511 -2.7 -8.7 Branched-chain-amino-acid aminotransferase compare
PP_0292 -2.7 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5097 -2.6 -11.2 homoserine O-acetyltransferase compare
PP_5098 -2.6 -7.0 methionine biosynthesis protein MetW compare
PP_1493 -2.6 -4.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1025 -2.6 -13.0 2-isopropylmalate synthase compare
PP_0291 -2.6 -5.0 conserved protein of unknown function compare
PP_2168 -2.5 -9.6 Transaldolase compare
PP_1985 -2.5 -5.4 3-isopropylmalate dehydratase large subunit compare
PP_4121 -2.4 -7.2 NADH-quinone oxidoreductase subunit C/D compare
PP_2001 -2.4 -8.5 O-succinylhomoserine sulfhydrylase compare
PP_3821 -2.4 -9.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2324 -2.3 -7.4 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2302 -2.2 -8.0 DNA-binding, ATP-dependent protease compare
PP_1742 -2.2 -4.0 conserved inner membrane protein of unknown function compare
PP_2414 -2.2 -1.7 conserved exported protein of unknown function compare
PP_4943 -2.1 -3.9 putative Glycosyl transferase compare
PP_2370 -2.1 -3.5 conserved protein of unknown function compare
PP_4940 -2.1 -9.3 Putative glycosyltransferase compare
PP_1743 -2.1 -10.6 acetate permease compare
PP_5346 -2.1 -7.9 pyruvate carboxylase subunit B compare
PP_2328 -2.0 -5.4 Phosphoadenosine phosphosulfate reductase compare
PP_0218 -2.0 -7.5 Sensory box protein compare
PP_1216 -1.9 -3.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4122 -1.9 -3.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1664 -1.9 -5.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_4120 -1.9 -5.3 NADH-quinone oxidoreductase subunit B compare
PP_1733 -1.8 -4.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_4700 -1.8 -4.5 pantothenate synthetase compare
PP_1656 -1.8 -3.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_1269 -1.7 -1.8 Universal stress protein family compare
PP_4004 -1.7 -4.7 DNA translocase FtsK compare
PP_4131 -1.7 -6.5 NADH-quinone oxidoreductase subunit N compare
PP_5347 -1.7 -7.6 pyruvate carboxylase subunit A compare
PP_2340 -1.6 -4.5 conserved protein of unknown function compare
PP_0353 -1.6 -5.8 Exonuclease compare
PP_5028 -1.6 -4.8 proline iminopeptidase compare
PP_4227 -1.6 -2.6 conserved protein of unknown function compare
PP_2631 -1.5 -1.8 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1764 -1.5 -3.9 Phosphoglycolate phosphatase 2 compare
PP_2773 -1.5 -2.3 conserved protein of unknown function compare
PP_4964 -1.5 -3.7 D-erythrose 4-phosphate dehydrogenase compare
PP_4124 -1.5 -5.3 NADH-quinone oxidoreductase subunit G compare
PP_5216 -1.5 -2.4 exopolyphosphatase compare
PP_2433 -1.4 -3.0 conserved protein of unknown function compare
PP_2322 -1.4 -4.6 Major outer membrane lipoprotein compare
PP_5035 -1.4 -5.6 Histidine utilization repressor compare
PP_2756 -1.4 -2.9 conserved protein of unknown function compare
PP_3539 -1.4 -2.6 putative Transcriptional regulator compare
PP_5146 -1.3 -6.2 RNA pyrophosphohydrolase compare
PP_5329 -1.3 -2.8 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3738 -1.3 -3.4 putative Transcriptional regulator VanR compare
PP_4988 -1.3 -4.9 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_5095 -1.3 -1.5 pyrroline-5-carboxylate reductase compare
PP_4989 -1.3 -3.3 Protein PilJ compare
PP_3519 -1.3 -1.4 putative Lipoprotein compare
PP_3484 -1.2 -4.2 Response regulator receiver protein compare
PP_4130 -1.2 -4.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4045 -1.2 -3.1 conserved protein of unknown function compare
PP_2084 -1.2 -5.2 Putative regulator of ribonuclease activity conserved
PP_2326 -1.2 -5.5 Universal stress protein compare
PP_5198 -1.2 -3.2 conserved protein of unknown function compare
PP_4354 -1.2 -2.9 flagellar export apparatus subunit compare
PP_1217 -1.2 -4.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4129 -1.2 -3.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5227 -1.2 -4.7 diaminopimelate decarboxylase compare
PP_2345 -1.2 -1.7 conserved exported protein of unknown function compare
PP_3903 -1.2 -1.9 conserved protein of unknown function compare
PP_1512 -1.2 -3.4 conserved protein of unknown function compare
PP_0888 -1.1 -2.9 Photosynthetic apparatus regulatory protein RegA compare
PP_0673 -1.1 -1.9 conserved protein of unknown function compare
PP_2320 -1.1 -6.3 conserved exported protein of unknown function compare
PP_5022 -1.1 -2.0 Glutamine transport ATP-binding protein GlnQ compare
PP_0003 -1.1 -2.4 16S RNA methyltransferase compare
PP_3810 -1.1 -1.6 conserved protein of unknown function compare
PP_0512 -1.1 -2.3 hypothetical protein compare
PP_2307 -1.1 -1.9 conserved protein of unknown function compare
PP_5348 -1.0 -4.6 Transcriptional regulator, LysR family compare
PP_4392 -1.0 -5.2 chemotaxis protein methyltransferase compare
PP_1716 -1.0 -2.2 Transcriptional regulator, Cro/CI family compare
PP_5652 -1.0 -1.6 conserved protein of unknown function, phage origin compare
PP_1800 -1.0 -5.7 Oxidoreductase Rmd compare
PP_5313 -1.0 -1.6 DNA-binding protein HU-alpha compare
PP_1825 -1.0 -3.2 conserved exported protein of unknown function compare
PP_1994 -1.0 -2.5 tRNA pseudouridine (38-40)synthase compare
PP_5327 -1.0 -3.0 putative phosphate ABC transporter, permease subunit compare
PP_4793 -0.9 -1.4 conserved protein of unknown function compare
PP_0153 -0.9 -1.7 hypothetical protein compare
PP_2152 -0.9 -2.5 glycerophosphoryl diester phosphodiesterase compare
PP_2592 -0.9 -2.9 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_1654 -0.9 -2.1 cysteine synthase B compare
PP_3312 -0.9 -1.4 putative Heat shock protein compare
PP_5001 -0.9 -2.5 protease HslVU, ATPase component compare
PP_0276 -0.9 -1.0 Transcriptional regulator, Cro/CI family compare
PP_1629 -0.9 -4.2 Protein RecA compare
PP_1609 -0.9 -2.4 conserved protein of unknown function compare
PP_3833 -0.9 -3.1 Response regulator compare
PP_1097 -0.9 -1.2 Methionine--tRNA ligase compare
PP_4480 -0.9 -4.4 arginine N-succinyltransferase, subunit alpha compare
PP_5328 -0.9 -1.7 putative phosphate transport system permease protein compare
PP_2054 -0.9 -2.5 putative DNA-binding transcriptional regulator compare
PP_3392 -0.9 -1.6 conserved protein of unknown function compare
PP_0833 -0.9 -1.6 queuine tRNA-ribosyltransferase compare
PP_2745 -0.9 -2.8 Universal stress protein family compare
PP_2976 -0.9 -1.5 putative transposase compare
PP_4345 -0.9 -4.2 Transcriptional regulator, GntR family compare
PP_0152 -0.8 -1.0 conserved exported protein of unknown function compare
PP_0007 -0.8 -2.6 conserved hypothetical protein compare
PP_4094 -0.8 -2.1 conserved protein of unknown function compare
PP_0656 -0.8 -3.4 putative Amino acid ABC transporter, permease protein compare
PP_1774 -0.8 -1.8 conserved exported protein of unknown function compare
PP_4368 -0.8 -3.1 flagellar motor switch protein compare
PP_4505 -0.8 -3.4 Sensor histidine kinase compare
PP_4156 -0.8 -1.9 Transcriptional regulator, LysR family compare
PP_0040 -0.8 -2.4 hypothetical protein compare
PP_5621 -0.8 -1.3 protein of unknown function compare
PP_1589 -0.8 -4.8 uridylyltransferase compare
PP_5038 -0.8 -2.2 conserved lipoprotein of unknown function compare
PP_2137 -0.8 -2.0 beta-ketoadipyl CoA thiolase, beta component compare
PP_3248 -0.8 -2.8 Dyp-type peroxidase family protein compare
PP_4938 -0.8 -4.8 putative Glycosyl transferase compare
PP_0319 -0.8 -1.7 conserved protein of unknown function compare
PP_3407 -0.8 -2.4 conserved protein of unknown function compare
PP_5225 -0.8 -1.1 frataxin compare
PP_4358 -0.8 -3.0 flagellar synthesis, switching and energizing component compare
PP_3647 -0.8 -2.6 putative Oxidoreductase compare
PP_2462 -0.8 -1.9 conserved protein of unknown function compare
PP_3052 -0.8 -0.9 conserved protein of unknown function compare
PP_5575 -0.8 -1.4 conserved protein of unknown function compare
PP_5217 -0.8 -4.8 Polyphosphate kinase compare
PP_1826 -0.8 -2.0 Hydrolase, isochorismatase family compare
PP_5224 -0.8 -1.4 conserved protein of unknown function compare
PP_1783 -0.8 -2.4 dTDP-glucose pyrophosphorylase compare
PP_1021 -0.7 -3.1 DNA-binding transcriptional regulator compare
PP_5609 -0.7 -2.5 conserved protein of unknown function compare
PP_2908 -0.7 -2.0 DNA-binding transcriptional repressor compare
PP_1802 -0.7 -5.6 glycosyl transferase compare
PP_5687 -0.7 -2.6 putative permease of the major facilitator superfamily compare
PP_3883 -0.7 -1.3 putative Phage holin compare
PP_5331 -0.7 -2.0 Long-chain acyl-CoA thioester hydrolase compare
PP_0086 -0.7 -1.6 conserved protein of unknown function compare
PP_5359 -0.7 -1.6 CobW/P47K family protein compare
PP_4942 -0.7 -1.2 conserved protein of unknown function compare
PP_4285 -0.7 -2.9 5-hydroxyisourate hydrolase compare
PP_0820 -0.7 -2.7 GCN5-related N-acetyltransferase compare
PP_2504 -0.7 -1.2 putative tautomerase K2 compare
PP_3198 -0.7 -0.8 Ferredoxin, 2Fe-2S compare
PP_3662 -0.7 -3.6 conserved protein of unknown function compare
PP_3580 -0.7 -1.1 conserved protein of unknown function compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Potassium acetate in Pseudomonas putida KT2440

For carbon source Potassium acetate across organisms