Experiment set1IT086 for Pseudomonas putida KT2440

Compare to:

Potassium Acetate Carbon Source (5mM)

200 most important genes:

  gene name fitness t score description  
PP_1635 -5.0 -4.4 DNA-binding response regulator compare
PP_0691 -4.5 -6.1 Glutamate 5-kinase compare
PP_0082 -4.4 -6.7 tryptophan synthase alpha chain compare
PP_4696 -4.4 -7.8 Nitrogen regulation protein NR(I) compare
PP_1088 -4.0 -12.7 Argininosuccinate synthase compare
PP_0966 -4.0 -10.8 Histidinol dehydrogenase compare
PP_0422 -4.0 -6.5 Indole-3-glycerol phosphate synthase compare
PP_4999 -3.9 -3.8 dihydroorotase-like protein compare
PP_0184 -3.9 -9.3 Argininosuccinate lyase compare
PP_5185 -3.8 -8.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0292 -3.8 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1079 -3.8 -6.8 Ornithine carbamoyltransferase compare
PP_1995 -3.6 -9.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4723 -3.6 -9.0 Carbamoyl-phosphate synthase large chain compare
PP_5014 -3.5 -4.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_0290 -3.5 -8.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4487 -3.5 -19.9 acetyl-CoA synthetase conserved
PP_4890 -3.5 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_4116 -3.4 -11.3 isocitrate lyase compare
PP_1695 -3.4 -10.9 putative Sodium-solute symporter/sensory box histidine kinase/response regulator conserved
PP_4799 -3.4 -5.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1988 -3.4 -8.8 3-isopropylmalate dehydrogenase compare
PP_4693 -3.3 -8.6 RNA polymerase-binding transcription factor DksA compare
PP_3511 -3.3 -9.1 Branched-chain-amino-acid aminotransferase compare
PP_5155 -3.3 -6.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2371 -3.2 -5.7 Sulphite reductase hemoprotein, beta subunit compare
PP_1986 -3.2 -3.7 3-isopropylmalate dehydratase small subunit compare
PP_4724 -3.2 -4.3 Carbamoyl-phosphate synthase small chain compare
PP_0967 -3.2 -11.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4678 -3.2 -13.6 Ketol-acid reductoisomerase compare
PP_1985 -3.2 -5.9 3-isopropylmalate dehydratase large subunit compare
PP_0965 -3.1 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0289 -3.1 -9.2 Imidazoleglycerol-phosphate dehydratase compare
PP_4680 -3.1 -13.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5098 -3.1 -8.3 methionine biosynthesis protein MetW compare
PP_0421 -3.0 -9.5 Anthranilate phosphoribosyltransferase compare
PP_0356 -3.0 -8.6 malate synthase G compare
PP_2168 -3.0 -11.6 Transaldolase compare
PP_0417 -3.0 -15.6 Anthranilate synthase component 1 compare
PP_5289 -2.9 -6.1 Acetylglutamate kinase compare
PP_4058 -2.8 -11.9 1,4-alpha-glucan branching enzyme compare
PP_0083 -2.8 -7.5 tryptophan synthase beta chain compare
PP_5097 -2.7 -12.3 homoserine O-acetyltransferase compare
PP_5659 -2.7 -3.7 protein of unknown function compare
PP_2000 -2.7 -3.1 amidophosphoribosyl transferase compare
PP_1025 -2.6 -11.5 2-isopropylmalate synthase compare
PP_3999 -2.6 -6.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0420 -2.6 -10.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5015 -2.6 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4120 -2.6 -5.6 NADH-quinone oxidoreductase subunit B compare
PP_0164 -2.6 -8.1 conserved protein of unknown function compare
PP_5128 -2.6 -7.9 Dihydroxy-acid dehydratase compare
PP_4909 -2.6 -8.6 phosphoserine phosphatase compare
PP_4679 -2.5 -6.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2370 -2.5 -3.6 conserved protein of unknown function compare
PP_2001 -2.5 -7.9 O-succinylhomoserine sulfhydrylase compare
PP_0291 -2.2 -3.4 conserved protein of unknown function compare
PP_0801 -2.2 -2.4 conserved exported protein of unknown function compare
PP_0914 -2.2 -10.5 GGDEF domain protein compare
PP_1664 -2.1 -5.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_2324 -2.0 -6.7 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_0218 -1.9 -9.7 Sensory box protein compare
PP_0293 -1.9 -3.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4126 -1.9 -2.7 NADH-quinone oxidoreductase subunit I compare
PP_4364 -1.9 -3.3 putative Anti-sigma F factor antagonist compare
PP_4964 -1.8 -3.7 D-erythrose 4-phosphate dehydrogenase compare
PP_2328 -1.7 -5.0 Phosphoadenosine phosphosulfate reductase compare
PP_2433 -1.7 -2.3 conserved protein of unknown function compare
PP_5347 -1.7 -7.8 pyruvate carboxylase subunit A compare
PP_1656 -1.7 -3.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_4121 -1.6 -5.8 NADH-quinone oxidoreductase subunit C/D compare
PP_2327 -1.6 -6.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1742 -1.6 -2.5 conserved inner membrane protein of unknown function compare
PP_1743 -1.5 -8.3 acetate permease compare
PP_4124 -1.5 -5.3 NADH-quinone oxidoreductase subunit G compare
PP_4129 -1.5 -4.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1493 -1.5 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4122 -1.5 -3.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1733 -1.5 -3.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_5346 -1.4 -6.5 pyruvate carboxylase subunit B compare
PP_2302 -1.4 -6.3 DNA-binding, ATP-dependent protease compare
PP_0232 -1.4 -2.0 ATP-binding taurine transporter subunit compare
PP_4700 -1.4 -3.7 pantothenate synthetase compare
PP_3241 -1.3 -1.5 conserved exported protein of unknown function compare
PP_3662 -1.3 -6.4 conserved protein of unknown function compare
PP_2084 -1.3 -6.1 Putative regulator of ribonuclease activity conserved
PP_5248 -1.3 -1.8 putative hydrolase compare
PP_1237 -1.3 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4109 -1.3 -2.6 conserved protein of unknown function compare
PP_0086 -1.3 -2.9 conserved protein of unknown function compare
PP_5039 -1.2 -1.8 conserved protein of unknown function compare
PP_1304 -1.2 -5.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0353 -1.2 -5.3 Exonuclease compare
PP_2326 -1.2 -6.1 Universal stress protein compare
PP_5621 -1.2 -2.5 protein of unknown function compare
PP_4004 -1.2 -4.0 DNA translocase FtsK compare
PP_3649 -1.2 -3.9 Transcriptional regulator, GntR family compare
PP_1269 -1.1 -1.6 Universal stress protein family compare
PP_4131 -1.1 -4.9 NADH-quinone oxidoreductase subunit N compare
PP_5582 -1.1 -1.7 conserved protein of unknown function compare
PP_3002 -1.1 -2.9 shikimate dehydrogenase-related enzyme compare
PP_2137 -1.1 -2.6 beta-ketoadipyl CoA thiolase, beta component compare
PP_2340 -1.1 -3.4 conserved protein of unknown function compare
PP_3833 -1.1 -3.6 Response regulator compare
PP_1328 -1.1 -2.3 Protein MraZ compare
PP_3551 -1.1 -1.8 DNA-binding response regulator, LuxR family compare
PP_4988 -1.0 -4.5 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_3248 -1.0 -3.1 Dyp-type peroxidase family protein compare
PP_4943 -1.0 -2.6 putative Glycosyl transferase compare
PP_2794 -1.0 -1.9 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_0653 -1.0 -1.6 conserved protein of unknown function compare
PP_5348 -1.0 -5.2 Transcriptional regulator, LysR family compare
PP_5146 -1.0 -4.5 RNA pyrophosphohydrolase compare
PP_5216 -1.0 -1.5 exopolyphosphatase compare
PP_2136 -1.0 -3.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4130 -1.0 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1217 -1.0 -3.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0393 -0.9 -2.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5717 -0.9 -1.8 conserved protein of unknown function compare
PP_1994 -0.9 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_2581 -0.9 -1.4 conserved protein of unknown function compare
PP_1783 -0.9 -2.7 dTDP-glucose pyrophosphorylase compare
PP_2345 -0.9 -1.1 conserved exported protein of unknown function compare
PP_4392 -0.9 -4.8 chemotaxis protein methyltransferase compare
PP_5329 -0.9 -2.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2847 -0.9 -1.8 Urease accessory protein UreJ compare
PP_3821 -0.9 -5.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0794 -0.9 -2.9 1-phosphofructokinase monomer compare
PP_1629 -0.9 -4.7 Protein RecA compare
PP_3043 -0.9 -2.0 conserved protein of unknown function compare
PP_2307 -0.9 -1.2 conserved protein of unknown function compare
PP_4379 -0.9 -2.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5227 -0.9 -4.0 diaminopimelate decarboxylase compare
PP_5701 -0.9 -1.2 conserved protein of unknown function compare
PP_4787 -0.9 -2.2 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1979 -0.9 -1.5 putative Hydrolase compare
PP_1589 -0.9 -5.3 uridylyltransferase compare
PP_2653 -0.9 -2.5 Transcriptional regulator, Cro/CI family compare
PP_2322 -0.8 -3.3 Major outer membrane lipoprotein compare
PP_2720 -0.8 -1.2 conserved protein of unknown function compare
PP_4940 -0.8 -3.8 Putative glycosyltransferase compare
PP_3295 -0.8 -2.4 YeeE/YedE family protein compare
PP_5035 -0.8 -3.3 Histidine utilization repressor compare
PP_4227 -0.8 -1.5 conserved protein of unknown function compare
PP_0833 -0.8 -1.7 queuine tRNA-ribosyltransferase compare
PP_5654 -0.8 -1.6 putative phosphotriesterase compare
PP_5028 -0.8 -2.8 proline iminopeptidase compare
PP_5557 -0.8 -1.1 protein of unknown function compare
PP_5603 -0.8 -3.0 putative FAD dependent oxidoreductase compare
PP_3614 -0.8 -1.7 conserved membrane protein of unknown function compare
PP_2320 -0.8 -4.1 conserved exported protein of unknown function compare
PP_0607 -0.7 -1.9 putative Type IV pili biogenesis protein FimT compare
PP_4008 -0.7 -3.6 ATP-dependent serine protease compare
PP_4066 -0.7 -1.4 methylglutaconyl-CoA hydratase compare
PP_5217 -0.7 -4.7 Polyphosphate kinase compare
PP_5294 -0.7 -3.8 Ribonuclease PH compare
PP_1128 -0.7 -2.6 OmpA family protein compare
PP_5295 -0.7 -1.4 conserved protein of unknown function compare
PP_3914 -0.7 -2.9 conserved protein of unknown function compare
PP_1387 -0.7 -2.8 Probable HTH-type transcriptional regulator TtgR compare
PP_2976 -0.7 -0.9 putative transposase compare
PP_2756 -0.7 -2.1 conserved protein of unknown function compare
PP_5640 -0.7 -1.6 conserved protein of unknown function compare
PP_5327 -0.7 -2.7 putative phosphate ABC transporter, permease subunit compare
PP_1824 -0.7 -1.4 Smr domain protein compare
PP_5230 -0.7 -2.4 Tyrosine recombinase XerC compare
PP_5328 -0.7 -1.4 putative phosphate transport system permease protein compare
PP_2462 -0.7 -1.7 conserved protein of unknown function compare
PP_2509 -0.7 -2.0 conserved protein of unknown function compare
PP_1508 -0.7 -1.9 conserved protein of unknown function compare
PP_0122 -0.7 -1.4 conserved exported protein of unknown function compare
PP_2309 -0.7 -1.0 conserved protein of unknown function compare
PP_4917 -0.7 -2.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4480 -0.7 -4.1 arginine N-succinyltransferase, subunit alpha compare
PP_4406 -0.7 -1.6 conserved protein of unknown function compare
PP_0123 -0.7 -4.4 DNA polymerase I, 5 compare
PP_2018 -0.7 -2.7 adhesin-associated BNR repeat protein (from data) compare
PP_1008 -0.7 -1.7 RNA polymerase subunit sigma-24 compare
PP_1872 -0.7 -4.2 glutamate-pyruvate aminotransferase compare
PP_3930 -0.7 -1.8 conserved exported protein of unknown function compare
PP_3541 -0.7 -1.4 Transporter, MgtC family compare
PP_5422 -0.7 -2.1 hypothetical protein compare
PP_3603 -0.6 -2.7 Transcriptional regulator, GntR family compare
PP_2804 -0.6 -2.1 Hydrolase, alpha/beta fold family compare
PP_3926 -0.6 -1.1 short-chain dehydrogenase compare
PP_3738 -0.6 -2.2 putative Transcriptional regulator VanR compare
PP_4196 -0.6 -1.6 conserved exported protein of unknown function compare
PP_4695 -0.6 -3.3 Sensory box histidine kinase compare
PP_0002 -0.6 -3.8 probable chromosome partition protein compare
PP_4546 -0.6 -2.6 ATP-dependent helicase HrpA compare
PP_2497 -0.6 -1.4 conserved protein of unknown function compare
PP_2318 -0.6 -2.2 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_1523 -0.6 -2.1 conserved protein of unknown function compare
PP_2414 -0.6 -1.1 conserved exported protein of unknown function compare
PP_1826 -0.6 -1.6 Hydrolase, isochorismatase family compare
PP_5267 -0.6 -0.8 putative cytochrome c5 compare
PP_2323 -0.6 -3.1 conserved protein of unknown function compare
PP_5093 -0.6 -0.8 twitching motility protein compare
PP_3365 -0.6 -1.0 Acetolactate synthase compare
PP_4824 -0.6 -3.5 Sensor histidine kinase/response regulator compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Potassium acetate in Pseudomonas putida KT2440

For carbon source Potassium acetate across organisms