Experiment set1IT086 for Pseudomonas sp. RS175

Compare to:

Sodium pyruvate carbon 10 mM

200 most important genes:

  gene name fitness t score description  
PFR28_01365 -5.5 -5.4 hypothetical protein compare
PFR28_04933 -5.4 -5.1 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_02824 -5.2 -8.6 3-isopropylmalate dehydratase large subunit compare
PFR28_02823 -5.1 -3.5 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_05016 -5.0 -17.6 Glutamate synthase [NADPH] small chain compare
PFR28_02821 -4.9 -20.8 3-isopropylmalate dehydrogenase compare
PFR28_04930 -4.9 -11.7 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_05015 -4.8 -27.8 Glutamate synthase [NADPH] large chain compare
PFR28_03697 -4.7 -17.4 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_04278 -4.6 -14.5 Dihydroxy-acid dehydratase compare
PFR28_05105 -4.6 -11.9 Phosphoserine phosphatase SerB2 compare
PFR28_04834 -4.5 -20.3 L-threonine dehydratase biosynthetic IlvA compare
PFR28_04202 -4.5 -3.1 5,10-methylenetetrahydrofolate reductase compare
PFR28_00186 -4.4 -8.1 ATP phosphoribosyltransferase compare
PFR28_03363 -4.3 -19.3 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_03217 -4.3 -3.0 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_04308 -4.2 -4.1 Amino-acid acetyltransferase compare
PFR28_00187 -4.0 -16.3 Histidinol dehydrogenase compare
PFR28_03699 -4.0 -8.8 Acetolactate synthase isozyme 3 large subunit compare
PFR28_03718 -4.0 -4.7 Transcriptional regulatory protein ZraR compare
PFR28_04832 -3.9 -15.7 putative phosphatase compare
PFR28_04246 -3.9 -14.6 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_02603 -3.8 -9.5 Siroheme synthase compare
PFR28_05125 -3.8 -9.9 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_04245 -3.7 -15.4 Homoserine O-succinyltransferase compare
PFR28_01366 -3.7 -12.6 Sulfite reductase [ferredoxin] compare
PFR28_01930 -3.7 -5.0 HTH-type transcriptional regulator McbR compare
PFR28_04517 -3.7 -18.1 Oxaloacetate decarboxylase alpha chain compare
PFR28_04518 -3.7 -12.5 2-oxoglutarate carboxylase small subunit compare
PFR28_00305 -3.6 -8.6 2-isopropylmalate synthase compare
PFR28_02811 -3.6 -8.3 Amidophosphoribosyltransferase compare
PFR28_04986 -3.6 -7.9 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_03282 -3.5 -12.3 Arginine N-succinyltransferase subunit alpha compare
PFR28_04519 -3.4 -8.7 HTH-type transcriptional activator CmpR compare
PFR28_04932 -3.3 -7.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_04985 -3.3 -7.6 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_00188 -3.3 -14.4 Histidinol-phosphate aminotransferase compare
PFR28_02810 -3.3 -16.5 O-succinylhomoserine sulfhydrylase compare
PFR28_04103 -3.1 -11.6 Biotin synthase compare
PFR28_03698 -3.1 -11.0 Acetolactate synthase isozyme 3 small subunit compare
PFR28_04929 -2.9 -7.3 Histidine biosynthesis bifunctional protein HisB compare
PFR28_03635 -2.8 -7.4 Malate:quinone oxidoreductase compare
PFR28_04102 -2.6 -11.7 8-amino-7-oxononanoate synthase compare
PFR28_04842 -2.6 -5.1 D-3-phosphoglycerate dehydrogenase compare
PFR28_04100 -2.6 -10.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_00966 -2.5 -16.1 HTH-type transcriptional regulator CysB compare
PFR28_03130 -2.4 -3.5 Streptothricin hydrolase compare
PFR28_00098 -2.4 -10.6 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_04565 -2.4 -14.6 Protein RarD compare
PFR28_04208 -2.3 -8.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_00193 -2.2 -13.0 Sulfate adenylyltransferase subunit 2 compare
PFR28_03721 -2.2 -7.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFR28_00194 -2.1 -11.4 Bifunctional enzyme CysN/CysC compare
PFR28_01619 -2.1 -10.7 hypothetical protein conserved
PFR28_04072 -2.1 -5.5 Bifunctional folate synthesis protein compare
PFR28_01618 -2.1 -9.8 Oxygen regulatory protein NreC conserved
PFR28_04425 -2.0 -9.7 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_03714 -2.0 -13.0 RNA polymerase-binding transcription factor DksA compare
PFR28_05201 -2.0 -4.9 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] compare
PFR28_03388 -1.9 -11.5 Quinolinate synthase A compare
PFR28_03304 -1.9 -2.1 hypothetical protein compare
PFR28_03844 -1.9 -6.7 Thiamine-phosphate synthase compare
PFR28_04252 -1.8 -10.3 Thiazole synthase compare
PFR28_04874 -1.8 -8.8 Phosphoenolpyruvate carboxykinase (ATP) compare
PFR28_03218 -1.8 -5.2 Phosphoribosylglycinamide formyltransferase compare
PFR28_05071 -1.8 -3.3 D-inositol-3-phosphate glycosyltransferase compare
PFR28_03843 -1.8 -8.4 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_01114 -1.7 -7.7 hypothetical protein compare
PFR28_03281 -1.7 -6.4 Arginine N-succinyltransferase subunit beta compare
PFR28_00695 -1.7 -2.3 Sulfur carrier protein TusA compare
PFR28_02484 -1.7 -9.2 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_05205 -1.7 -5.3 Precorrin-8X methylmutase compare
PFR28_03012 -1.7 -7.4 Phosphate acyltransferase compare
PFR28_04564 -1.6 -11.4 Aspartate-semialdehyde dehydrogenase compare
PFR28_01156 -1.6 -6.5 hypothetical protein compare
PFR28_04566 -1.6 -10.5 4-chloro-allylglycine synthase compare
PFR28_03223 -1.6 -10.4 GTP pyrophosphokinase compare
PFR28_02608 -1.6 -2.2 DNA translocase FtsK compare
PFR28_02838 -1.6 -9.2 Aromatic-amino-acid aminotransferase compare
PFR28_01876 -1.5 -1.7 hypothetical protein compare
PFR28_04436 -1.5 -7.7 hypothetical protein compare
PFR28_00876 -1.5 -4.1 hypothetical protein compare
PFR28_05139 -1.4 -2.7 hypothetical protein compare
PFR28_01060 -1.4 -5.7 HTH-type transcriptional repressor NanR compare
PFR28_00325 -1.3 -4.8 Inner membrane protein YpjD compare
PFR28_05204 -1.3 -3.8 Sulfite reductase [ferredoxin] compare
PFR28_01154 -1.3 -2.3 hypothetical protein compare
PFR28_03420 -1.3 -4.2 hypothetical protein compare
PFR28_03837 -1.3 -6.1 Leucine-responsive regulatory protein compare
PFR28_01118 -1.3 -3.4 hypothetical protein compare
PFR28_03612 -1.3 -4.2 Cell division protein ZapE compare
PFR28_04567 -1.3 -8.4 hypothetical protein compare
PFR28_04944 -1.2 -3.9 DNA-binding transcriptional regulator NtrC compare
PFR28_03414 -1.2 -2.3 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_00478 -1.2 -2.6 Transcriptional regulatory protein DegU compare
PFR28_02704 -1.2 -1.4 hypothetical protein compare
PFR28_00535 -1.2 -2.5 hypothetical protein compare
PFR28_04945 -1.2 -4.0 Sensory histidine kinase/phosphatase NtrB compare
PFR28_00356 -1.2 -5.4 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_05091 -1.2 -9.1 Phosphomethylpyrimidine synthase compare
PFR28_04902 -1.2 -6.1 Inner membrane protein YgaZ compare
PFR28_05134 -1.2 -1.9 hypothetical protein compare
PFR28_05005 -1.2 -7.2 NADP-dependent malic enzyme compare
PFR28_03653 -1.1 -3.4 Molybdopterin-synthase adenylyltransferase compare
PFR28_01113 -1.1 -2.9 DNA topoisomerase 1 compare
PFR28_04071 -1.1 -1.7 Multifunctional CCA protein compare
PFR28_03102 -1.1 -8.8 Cation/acetate symporter ActP compare
PFR28_03860 -1.1 -3.1 putative murein peptide carboxypeptidase compare
PFR28_04903 -1.1 -5.4 hypothetical protein compare
PFR28_00837 -1.1 -5.9 hypothetical protein compare
PFR28_05244 -1.1 -8.4 Copper-exporting P-type ATPase compare
PFR28_00873 -1.1 -4.7 hypothetical protein compare
PFR28_04377 -1.1 -5.4 hypothetical protein compare
PFR28_04585 -1.1 -5.7 Chromosome partitioning protein ParA compare
PFR28_04569 -1.1 -5.3 HTH-type transcriptional regulator CdhR compare
PFR28_01378 -1.1 -2.7 Magnesium-chelatase 38 kDa subunit compare
PFR28_02403 -1.1 -1.5 Na(+)/H(+) antiporter subunit C1 compare
PFR28_05206 -1.0 -7.2 Precorrin-2 C(20)-methyltransferase compare
PFR28_02268 -1.0 -2.0 hypothetical protein compare
PFR28_04865 -1.0 -5.2 Glutamate--cysteine ligase compare
PFR28_03875 -1.0 -1.2 hypothetical protein compare
PFR28_03204 -1.0 -6.0 Cobyric acid synthase compare
PFR28_01084 -1.0 -3.7 hypothetical protein compare
PFR28_03200 -1.0 -3.9 Adenosylcobinamide-GDP ribazoletransferase compare
PFR28_00425 -1.0 -7.2 Protein-L-isoaspartate O-methyltransferase compare
PFR28_04030 -1.0 -7.4 hypothetical protein compare
PFR28_03627 -0.9 -2.5 SOS response-associated protein YedK compare
PFR28_00855 -0.9 -6.2 hypothetical protein compare
PFR28_00480 -0.9 -3.8 HTH-type transcriptional activator CmpR compare
PFR28_01265 -0.9 -4.4 (R)-benzylsuccinyl-CoA dehydrogenase compare
PFR28_03883 -0.9 -4.7 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase compare
PFR28_00853 -0.9 -4.5 Chemotaxis protein CheY compare
PFR28_03206 -0.9 -4.7 Cobalamin biosynthesis protein CobD compare
PFR28_01431 -0.9 -2.7 Chemotaxis protein CheW compare
PFR28_01836 -0.9 -3.0 Transcriptional regulator SlyA compare
PFR28_03202 -0.9 -1.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_04621 -0.9 -5.0 High-affinity zinc uptake system protein ZnuA conserved
PFR28_04040 -0.9 -2.5 Protein YhfA compare
PFR28_00851 -0.9 -1.5 Flagellum site-determining protein YlxH compare
PFR28_04782 -0.9 -6.7 hypothetical protein compare
PFR28_01263 -0.9 -3.7 HTH-type transcriptional regulator CueR compare
PFR28_00472 -0.9 -2.7 Protein RecA compare
PFR28_03182 -0.9 -2.6 Recombination-associated protein RdgC compare
PFR28_04344 -0.8 -2.6 Exopolyphosphatase compare
PFR28_03208 -0.8 -5.6 Cobyrinate a,c-diamide synthase compare
PFR28_01425 -0.8 -2.2 hypothetical protein compare
PFR28_01083 -0.8 -3.7 putative copper-importing P-type ATPase A compare
PFR28_01081 -0.8 -4.4 hypothetical protein compare
PFR28_03412 -0.8 -3.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_05207 -0.8 -4.5 Siroheme synthase compare
PFR28_03739 -0.8 -1.6 hypothetical protein compare
PFR28_04633 -0.8 -3.0 Alginate biosynthesis sensor protein KinB compare
PFR28_04343 -0.8 -1.6 Glutamine transport ATP-binding protein GlnQ compare
PFR28_02283 -0.8 -2.0 hypothetical protein compare
PFR28_01572 -0.8 -2.0 hypothetical protein compare
PFR28_00537 -0.8 -2.3 Lipopolysaccharide export system ATP-binding protein LptB compare
PFR28_01334 -0.8 -2.4 hypothetical protein compare
PFR28_01377 -0.8 -5.7 Aerobic cobaltochelatase subunit CobN compare
PFR28_03749 -0.8 -1.4 Outer membrane protein assembly factor BamD compare
PFR28_03664 -0.8 -2.1 Ribosome-binding ATPase YchF compare
PFR28_05199 -0.8 -2.6 Precorrin-6A reductase compare
PFR28_04325 -0.8 -3.9 5-formyltetrahydrofolate cyclo-ligase compare
PFR28_05212 -0.8 -5.2 Sensor histidine kinase RcsC compare
PFR28_01369 -0.8 -5.5 Methionine synthase compare
PFR28_03272 -0.8 -1.4 Translational regulator CsrA2 compare
PFR28_02715 -0.8 -2.9 hypothetical protein compare
PFR28_00044 -0.7 -2.4 hypothetical protein compare
PFR28_05058 -0.7 -5.5 hypothetical protein compare
PFR28_00839 -0.7 -3.0 hypothetical protein compare
PFR28_03666 -0.7 -1.9 hypothetical protein compare
PFR28_03369 -0.7 -3.4 Glycerol-3-phosphate regulon repressor compare
PFR28_00980 -0.7 -1.5 ATP-dependent RNA helicase DeaD compare
PFR28_02812 -0.7 -2.4 hypothetical protein compare
PFR28_00074 -0.7 -4.0 Chaperone protein DnaJ compare
PFR28_00271 -0.7 -2.9 hypothetical protein compare
PFR28_01661 -0.7 -1.0 Delta(1)-pyrroline-2-carboxylate/Delta(1)- piperideine-2-carboxylate reductase compare
PFR28_02975 -0.7 -2.3 hypothetical protein compare
PFR28_00572 -0.7 -4.3 HTH-type transcriptional regulator HexR compare
PFR28_03283 -0.7 -3.3 Succinylornithine transaminase/acetylornithine aminotransferase compare
PFR28_04675 -0.7 -1.5 hypothetical protein compare
PFR28_00764 -0.7 -1.6 hypothetical protein compare
PFR28_04628 -0.7 -1.9 Thiol:disulfide interchange protein DsbA compare
PFR28_02201 -0.7 -1.2 Chaperone SurA compare
PFR28_02759 -0.7 -2.3 hypothetical protein compare
PFR28_03427 -0.7 -3.2 Sensor histidine kinase RcsC compare
PFR28_02517 -0.7 -2.1 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_01672 -0.7 -1.4 hypothetical protein compare
PFR28_02686 -0.7 -1.7 Prophage DNA-packing protein NohA compare
PFR28_02127 -0.6 -1.4 hypothetical protein compare
PFR28_01003 -0.6 -2.8 hypothetical protein compare
PFR28_04369 -0.6 -1.3 hypothetical protein compare
PFR28_03704 -0.6 -4.8 hypothetical protein compare
PFR28_01718 -0.6 -2.2 Response regulator receiver protein CpdR compare
PFR28_04931 -0.6 -1.3 hypothetical protein compare
PFR28_01372 -0.6 -2.1 Precorrin-4 C(11)-methyltransferase compare
PFR28_04234 -0.6 -3.3 hypothetical protein compare
PFR28_00688 -0.6 -0.9 hypothetical protein compare
PFR28_00605 -0.6 -4.8 hypothetical protein compare
PFR28_03413 -0.6 -1.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_00424 -0.6 -3.1 '5'-nucleotidase SurE' transl_table=11 compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Sodium pyruvate in Pseudomonas sp. RS175

For carbon source Sodium pyruvate across organisms