Experiment set1IT085 for Pseudomonas putida KT2440

Compare to:

Potassium Acetate Carbon Source (20mM)

200 most important genes:

  gene name fitness t score description  
PP_5289 -5.7 -3.9 Acetylglutamate kinase compare
PP_0691 -5.7 -3.9 Glutamate 5-kinase compare
PP_5659 -5.6 -3.9 protein of unknown function compare
PP_0293 -5.6 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1088 -5.4 -9.0 Argininosuccinate synthase compare
PP_5015 -5.4 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4116 -5.3 -6.4 isocitrate lyase compare
PP_4678 -5.2 -9.4 Ketol-acid reductoisomerase compare
PP_0422 -5.2 -6.2 Indole-3-glycerol phosphate synthase compare
PP_4679 -5.2 -3.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5185 -5.1 -6.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0082 -5.1 -5.0 tryptophan synthase alpha chain compare
PP_0967 -5.1 -9.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4890 -5.1 -4.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_4680 -5.0 -7.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1988 -5.0 -6.8 3-isopropylmalate dehydrogenase compare
PP_0184 -5.0 -8.3 Argininosuccinate lyase compare
PP_4696 -4.9 -6.6 Nitrogen regulation protein NR(I) compare
PP_1995 -4.8 -8.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2168 -4.8 -9.7 Transaldolase compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_0083 -4.8 -4.7 tryptophan synthase beta chain compare
PP_4487 -4.8 -18.2 acetyl-CoA synthetase conserved
PP_5097 -4.7 -10.6 homoserine O-acetyltransferase compare
PP_1079 -4.7 -6.4 Ornithine carbamoyltransferase compare
PP_0966 -4.7 -10.4 Histidinol dehydrogenase compare
PP_4799 -4.7 -3.2 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5098 -4.6 -7.0 methionine biosynthesis protein MetW compare
PP_1695 -4.5 -10.5 putative Sodium-solute symporter/sensory box histidine kinase/response regulator conserved
PP_0417 -4.5 -15.8 Anthranilate synthase component 1 compare
PP_3511 -4.3 -8.2 Branched-chain-amino-acid aminotransferase compare
PP_0289 -4.3 -8.7 Imidazoleglycerol-phosphate dehydratase compare
PP_0290 -4.3 -9.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2001 -4.3 -9.1 O-succinylhomoserine sulfhydrylase compare
PP_4909 -4.2 -8.0 phosphoserine phosphatase compare
PP_0356 -4.1 -8.8 malate synthase G compare
PP_2327 -4.1 -7.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0965 -4.1 -10.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1985 -4.0 -4.8 3-isopropylmalate dehydratase large subunit compare
PP_4723 -4.0 -6.7 Carbamoyl-phosphate synthase large chain compare
PP_0420 -4.0 -11.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5095 -3.9 -2.7 pyrroline-5-carboxylate reductase compare
PP_0292 -3.9 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2371 -3.9 -4.6 Sulphite reductase hemoprotein, beta subunit compare
PP_5014 -3.8 -4.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_1635 -3.7 -2.6 DNA-binding response regulator compare
PP_1025 -3.7 -12.4 2-isopropylmalate synthase compare
PP_5128 -3.7 -8.9 Dihydroxy-acid dehydratase compare
PP_0421 -3.6 -7.2 Anthranilate phosphoribosyltransferase compare
PP_4693 -3.6 -8.9 RNA polymerase-binding transcription factor DksA compare
PP_4058 -3.6 -12.2 1,4-alpha-glucan branching enzyme compare
PP_4724 -3.4 -4.0 Carbamoyl-phosphate synthase small chain compare
PP_4122 -3.4 -4.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5155 -3.4 -5.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1986 -3.3 -3.8 3-isopropylmalate dehydratase small subunit compare
PP_3999 -3.0 -6.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2328 -3.0 -5.5 Phosphoadenosine phosphosulfate reductase compare
PP_4124 -2.8 -6.3 NADH-quinone oxidoreductase subunit G compare
PP_2000 -2.8 -2.6 amidophosphoribosyl transferase compare
PP_0164 -2.7 -8.3 conserved protein of unknown function compare
PP_4129 -2.7 -5.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4364 -2.7 -4.2 putative Anti-sigma F factor antagonist compare
PP_2370 -2.6 -3.1 conserved protein of unknown function compare
PP_4700 -2.5 -4.4 pantothenate synthetase compare
PP_5347 -2.5 -10.6 pyruvate carboxylase subunit A compare
PP_4121 -2.5 -7.0 NADH-quinone oxidoreductase subunit C/D compare
PP_1664 -2.5 -5.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_2847 -2.4 -3.1 Urease accessory protein UreJ compare
PP_4120 -2.4 -6.1 NADH-quinone oxidoreductase subunit B compare
PP_3098 -2.4 -1.9 conserved protein of unknown function compare
PP_4699 -2.1 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1493 -2.1 -4.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4130 -2.1 -5.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5346 -2.1 -6.2 pyruvate carboxylase subunit B compare
PP_3662 -2.1 -8.7 conserved protein of unknown function compare
PP_5035 -2.0 -7.2 Histidine utilization repressor compare
PP_4131 -1.9 -6.9 NADH-quinone oxidoreductase subunit N compare
PP_0291 -1.9 -3.0 conserved protein of unknown function compare
PP_4964 -1.9 -3.8 D-erythrose 4-phosphate dehydrogenase compare
PP_0914 -1.9 -10.0 GGDEF domain protein compare
PP_5028 -1.9 -5.0 proline iminopeptidase compare
PP_1654 -1.9 -3.5 cysteine synthase B compare
PP_0393 -1.9 -3.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5248 -1.9 -2.1 putative hydrolase compare
PP_2433 -1.9 -3.5 conserved protein of unknown function compare
PP_2324 -1.8 -6.7 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5216 -1.8 -2.6 exopolyphosphatase compare
PP_0218 -1.8 -7.3 Sensory box protein compare
PP_1783 -1.7 -4.2 dTDP-glucose pyrophosphorylase compare
PP_2345 -1.7 -2.8 conserved exported protein of unknown function compare
PP_5748 -1.6 -2.1 cytochrome c heme lyase subunit compare
PP_1304 -1.6 -7.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4126 -1.5 -2.6 NADH-quinone oxidoreductase subunit I compare
PP_1609 -1.5 -3.4 conserved protein of unknown function compare
PP_1656 -1.5 -2.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_0154 -1.5 -8.8 Succinyl-CoA:acetate CoA-transferase (EC 2.8.3.18) (from data) conserved
PP_4008 -1.5 -6.5 ATP-dependent serine protease compare
PP_5241 -1.5 -3.1 DNA-binding response regulator, LuxR family compare
PP_4917 -1.5 -4.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0195 -1.5 -1.8 conserved protein of unknown function compare
PP_1364 -1.4 -5.9 conserved exported protein of unknown function compare
PP_2302 -1.4 -5.8 DNA-binding, ATP-dependent protease compare
PP_3637 -1.4 -1.5 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0002 -1.4 -7.1 probable chromosome partition protein compare
PP_2137 -1.4 -2.6 beta-ketoadipyl CoA thiolase, beta component compare
PP_0820 -1.4 -5.2 GCN5-related N-acetyltransferase compare
PP_1237 -1.4 -2.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1629 -1.4 -6.0 Protein RecA compare
PP_5348 -1.4 -5.0 Transcriptional regulator, LysR family compare
PP_1142 -1.3 -1.3 conserved protein of unknown function compare
PP_4546 -1.3 -4.5 ATP-dependent helicase HrpA compare
PP_2402 -1.3 -2.8 putative Sensor histidine kinase compare
PP_1589 -1.3 -7.2 uridylyltransferase compare
PP_5198 -1.3 -3.0 conserved protein of unknown function compare
PP_2631 -1.3 -1.9 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1743 -1.3 -8.0 acetate permease compare
PP_4109 -1.3 -3.2 conserved protein of unknown function compare
PP_4480 -1.2 -6.8 arginine N-succinyltransferase, subunit alpha compare
PP_4254 -1.2 -2.2 conserved protein of unknown function compare
PP_0653 -1.2 -1.6 conserved protein of unknown function compare
PP_3541 -1.2 -2.8 Transporter, MgtC family compare
PP_5227 -1.2 -4.6 diaminopimelate decarboxylase compare
PP_1872 -1.2 -6.3 glutamate-pyruvate aminotransferase compare
PP_5327 -1.2 -3.0 putative phosphate ABC transporter, permease subunit compare
PP_3649 -1.2 -4.0 Transcriptional regulator, GntR family compare
PP_1512 -1.2 -2.8 conserved protein of unknown function compare
PP_1303 -1.2 -4.7 Sulfate adenylyltransferase subunit 2 compare
PP_3603 -1.1 -4.7 Transcriptional regulator, GntR family compare
PP_1764 -1.1 -3.1 Phosphoglycolate phosphatase 2 compare
PP_4847 -1.1 -2.6 chaperone modulatory of CbpA co-chaperone protein compare
PP_1742 -1.1 -2.7 conserved inner membrane protein of unknown function compare
PP_5146 -1.1 -4.7 RNA pyrophosphohydrolase compare
PP_5471 -1.1 -1.9 putative response regulator receiver protein compare
PP_0086 -1.1 -2.7 conserved protein of unknown function compare
PP_1826 -1.1 -2.6 Hydrolase, isochorismatase family compare
PP_2032 -1.0 -4.7 putative ATPase compare
PP_1021 -1.0 -3.6 DNA-binding transcriptional regulator compare
PP_4874 -1.0 -1.8 50S ribosomal protein L9 compare
PP_0945 -1.0 -1.9 conserved protein of unknown function compare
PP_5267 -1.0 -1.6 putative cytochrome c5 compare
PP_3248 -1.0 -2.9 Dyp-type peroxidase family protein compare
PP_2326 -1.0 -4.2 Universal stress protein compare
PP_1692 -1.0 -2.6 conserved protein of unknown function compare
PP_5022 -1.0 -1.6 Glutamine transport ATP-binding protein GlnQ compare
PP_2189 -1.0 -1.5 conserved protein of unknown function compare
PP_5359 -1.0 -2.8 CobW/P47K family protein compare
PP_5445 -1.0 -0.9 conserved protein of unknown function compare
PP_4004 -1.0 -3.4 DNA translocase FtsK compare
PP_4379 -1.0 -3.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2765 -1.0 -1.9 putative Sulfonate monooxygenase MsuD compare
PP_4296 -0.9 -1.4 conserved exported protein of unknown function compare
PP_1790 -0.9 -2.5 putative Acylneuraminate cytidylyltransferase compare
PP_5294 -0.9 -4.0 Ribonuclease PH compare
PP_2136 -0.9 -2.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_3519 -0.9 -1.1 putative Lipoprotein compare
PP_5331 -0.9 -2.1 Long-chain acyl-CoA thioester hydrolase compare
PP_4880 -0.9 -6.1 exoribonuclease R compare
PP_5168 -0.9 -2.9 sulfate/thiosulfate import ATP-binding protein compare
PP_0833 -0.9 -1.6 queuine tRNA-ribosyltransferase compare
PP_4479 -0.9 -2.9 arginine N-succinyltransferase, subunit beta compare
PP_2322 -0.9 -3.2 Major outer membrane lipoprotein compare
PP_5707 -0.9 -2.9 conserved protein of unknown function compare
PP_1733 -0.9 -2.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_0757 -0.9 -3.0 conserved protein of unknown function compare
PP_2793 -0.9 -1.8 Acyl-CoA dehydrogenase family protein compare
PP_4329 -0.9 -2.3 FlhB domain protein compare
PP_1217 -0.9 -3.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2217 -0.9 -2.6 enoyl-CoA hydratase compare
PP_1404 -0.9 -2.3 conserved protein of unknown function compare
PP_1473 -0.9 -2.0 conserved protein of unknown function compare
PP_4824 -0.9 -4.4 Sensor histidine kinase/response regulator compare
PP_4285 -0.9 -3.4 5-hydroxyisourate hydrolase compare
PP_4581 -0.9 -1.9 putative amidotransferase compare
PP_5309 -0.9 -4.0 oxidative and nitrosative stress transcriptional dual regulator compare
PP_5217 -0.8 -4.8 Polyphosphate kinase compare
PP_0209 -0.8 -2.8 ATP-binding taurine transporter subunit compare
PP_4392 -0.8 -3.6 chemotaxis protein methyltransferase compare
PP_3411 -0.8 -1.2 conserved protein of unknown function compare
PP_2530 -0.8 -1.5 conserved protein of unknown function compare
PP_4988 -0.8 -3.6 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4590 -0.8 -3.3 conserved protein of unknown function compare
PP_5157 -0.8 -2.3 conserved exported protein of unknown function compare
PP_0673 -0.8 -1.0 conserved protein of unknown function compare
PP_4645 -0.8 -1.9 Large-conductance mechanosensitive channel compare
PP_1216 -0.8 -1.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5317 -0.8 -1.9 Probable chorismate pyruvate-lyase compare
PP_4720 -0.8 -1.9 putative RNA binding protein compare
PP_1562 -0.8 -1.1 putative Phage terminase, small subunit compare
PP_4642 -0.8 -1.0 Cyclic diguanosine monophosphate-binding protein compare
PP_3307 -0.8 -1.6 conserved protein of unknown function compare
PP_4223 -0.8 -1.4 diaminobutyrate-2-oxoglutarate transaminase compare
PP_1716 -0.8 -1.8 Transcriptional regulator, Cro/CI family compare
PP_5652 -0.8 -1.9 conserved protein of unknown function, phage origin compare
PP_2520 -0.8 -1.6 conserved protein of unknown function compare
PP_5054 -0.8 -1.6 glutaredoxin 3 compare
PP_0406 -0.7 -2.5 Nucleotidyltransferase family protein compare
PP_4891 -0.7 -2.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3035 -0.7 -1.5 conserved protein of unknown function compare
PP_1374 -0.7 -2.2 conserved protein of unknown function compare
PP_2907 -0.7 -2.0 DNA-binding response regulator compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Potassium acetate in Pseudomonas putida KT2440

For carbon source Potassium acetate across organisms